Gene annotation
Transcriptome id Sobic.002G112600.2,Sobic.002G112600.1
Synonym Sb02g009630
Functional annotation zinc finger family protein, putative, expressed
UniProt C5X4A0 , A0A1W0W3D2
Pfam PF00641
Panther DB PTHR23111 PTHR23111:SF29
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G55040 : zinc finger (Ran-binding) family protein
RAP-DB (Rice) LOC_Os07g22024.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a013309
Brachypodium PNT76744
Barley -
Wheat TraesCS6A02G359500 , TraesCS6B02G392400 , TraesCS6D02G342400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
2 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
3 Sobic.010G224700 - K17680: twinkle protein
4 Sobic.007G014800 RNA recognition motif containing protein, putative, expressed -
5 Sobic.005G000300 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
6 Sobic.004G027400 - -
7 Sobic.009G163600 exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41
8 Sobic.001G453500 expressed protein -
9 Sobic.004G027300 expressed protein -
10 Sobic.007G201700 mTERF domain containing protein, expressed -
11 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
12 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
13 Sobic.004G097900 expressed protein -
14 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
15 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
16 Sobic.002G003300 - K10884: XRCC6, KU70, ATP-dependent DNA helicase 2 subunit 1
17 Sobic.009G235200 ribosomal RNA large subunit methyltransferase J, putative, expressed K14857: SPB1, AdoMet-dependent rRNA methyltransferase SPB1
18 Sobic.008G111600 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
19 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
20 Sobic.006G029100 actin, putative, expressed K11673: ACTR8, ARP8, actin-related protein 8


Gene co-expression network
sample Sobic002G112600 Sobic002G112600 Sobic004G151000 Sobic004G151000 Sobic002G112600--Sobic004G151000 Sobic004G215900 Sobic004G215900 Sobic002G112600--Sobic004G215900 Sobic010G224700 Sobic010G224700 Sobic002G112600--Sobic010G224700 Sobic007G014800 Sobic007G014800 Sobic002G112600--Sobic007G014800 Sobic005G000300 Sobic005G000300 Sobic002G112600--Sobic005G000300 Sobic004G027400 Sobic004G027400 Sobic002G112600--Sobic004G027400 Sobic009G163600 Sobic009G163600 Sobic002G112600--Sobic009G163600 Sobic001G453500 Sobic001G453500 Sobic002G112600--Sobic001G453500 Sobic004G027300 Sobic004G027300 Sobic002G112600--Sobic004G027300 Sobic001G049800 Sobic001G049800 Sobic004G151000--Sobic001G049800 Sobic004G151000--Sobic004G027300 Sobic006G111200 Sobic006G111200 Sobic004G151000--Sobic006G111200 Sobic002G378100 Sobic002G378100 Sobic004G151000--Sobic002G378100 Sobic007G060600 Sobic007G060600 Sobic004G151000--Sobic007G060600 Sobic004G151000--Sobic002G112600 Sobic004G151000--Sobic001G453500 Sobic006G059500 Sobic006G059500 Sobic004G151000--Sobic006G059500 Sobic007G059700 Sobic007G059700 Sobic004G151000--Sobic007G059700 Sobic008G068100 Sobic008G068100 Sobic004G215900--Sobic008G068100 Sobic006G236000 Sobic006G236000 Sobic004G215900--Sobic006G236000 Sobic009G191500 Sobic009G191500 Sobic004G215900--Sobic009G191500 Sobic002G003300 Sobic002G003300 Sobic004G215900--Sobic002G003300 Sobic001G024000 Sobic001G024000 Sobic004G215900--Sobic001G024000 Sobic008G111600 Sobic008G111600 Sobic004G215900--Sobic008G111600 Sobic004G038100 Sobic004G038100 Sobic004G215900--Sobic004G038100 Sobic004G215900--Sobic002G112600 Sobic002G043000 Sobic002G043000 Sobic004G215900--Sobic002G043000 Sobic010G224700--Sobic002G378100 Sobic008G017100 Sobic008G017100 Sobic010G224700--Sobic008G017100 Sobic010G224700--Sobic004G027300 Sobic001G119600 Sobic001G119600 Sobic010G224700--Sobic001G119600 Sobic003G123200 Sobic003G123200 Sobic010G224700--Sobic003G123200 Sobic008G163500 Sobic008G163500 Sobic010G224700--Sobic008G163500 Sobic010G224700--Sobic001G049800 Sobic003G425100 Sobic003G425100 Sobic010G224700--Sobic003G425100 Sobic003G199300 Sobic003G199300 Sobic010G224700--Sobic003G199300 Sobic003G123100 Sobic003G123100 Sobic007G014800--Sobic003G123100 Sobic009G142000 Sobic009G142000 Sobic007G014800--Sobic009G142000 Sobic004G086200 Sobic004G086200 Sobic007G014800--Sobic004G086200 Sobic007G014800--Sobic002G112600 Sobic001G346900 Sobic001G346900 Sobic007G014800--Sobic001G346900 Sobic004G285000 Sobic004G285000 Sobic007G014800--Sobic004G285000 Sobic007G014800--Sobic004G215900 Sobic006G226300 Sobic006G226300 Sobic007G014800--Sobic006G226300 Sobic007G014800--Sobic008G163500 Sobic005G000300--Sobic002G112600 Sobic004G031300 Sobic004G031300 Sobic005G000300--Sobic004G031300 Sobic010G091500 Sobic010G091500 Sobic005G000300--Sobic010G091500 Sobic005G000300--Sobic003G123200 Sobic005G000300--Sobic010G224700 Sobic001G334100 Sobic001G334100 Sobic005G000300--Sobic001G334100 Sobic009G246500 Sobic009G246500 Sobic005G000300--Sobic009G246500 Sobic005G000300--Sobic002G378100 Sobic005G000300--Sobic008G163500 Sobic004G027400--Sobic004G215900 Sobic004G027400--Sobic001G453500 Sobic004G027400--Sobic002G112600 Sobic004G027400--Sobic004G027300 Sobic004G027400--Sobic008G068100 Sobic004G027400--Sobic010G224700 Sobic006G140400 Sobic006G140400 Sobic004G027400--Sobic006G140400 Sobic005G028100 Sobic005G028100 Sobic004G027400--Sobic005G028100 Sobic004G027400--Sobic007G014800 Sobic009G163600--Sobic003G425100 Sobic003G436600 Sobic003G436600 Sobic009G163600--Sobic003G436600 Sobic009G163600--Sobic002G112600 Sobic009G163600--Sobic010G224700 Sobic001G322600 Sobic001G322600 Sobic009G163600--Sobic001G322600 Sobic009G163600--Sobic008G163500 Sobic009G163600--Sobic004G038100 Sobic009G163600--Sobic007G059700 Sobic009G163600--Sobic006G140400 Sobic001G453500--Sobic006G111200 Sobic001G368300 Sobic001G368300 Sobic001G453500--Sobic001G368300 Sobic001G453500--Sobic004G151000 Sobic001G453500--Sobic006G140400 Sobic001G453500--Sobic004G027400 Sobic001G453500--Sobic004G027300 Sobic001G453500--Sobic001G049800 Sobic001G453500--Sobic002G112600 Sobic009G105400 Sobic009G105400 Sobic001G453500--Sobic009G105400 Sobic004G027300--Sobic004G151000 Sobic004G027300--Sobic001G049800 Sobic004G027300--Sobic010G224700 Sobic004G027300--Sobic007G060600 Sobic004G027300--Sobic002G378100 Sobic004G027300--Sobic003G425100 Sobic004G027300--Sobic001G453500 Sobic004G027300--Sobic007G059700 Sobic004G027300--Sobic002G112600
Octagon: transcription factors


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