Gene annotation
Transcriptome id Sobic.006G236000.2,Sobic.006G236000.1
Synonym NRPD2A, NRPE2, NRPD2, Sb06g030300, DRD2, DMS2
Functional annotation DNA-directed RNA polymerase subunit, putative, expressed
UniProt C5Y8Y9
Pfam PF04561 PF04567 PF04565 PF04566 PF04560 PF04563 PF00562
Panther DB PTHR20856 PTHR20856:SF21
NCBI CDD -
KEGG Orthology K16252; NRPD2, DNA-directed RNA polymerase IV and V subunit 2
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G23780 : nuclear RNA polymerase D2A
RAP-DB (Rice) LOC_Os04g54840.1 : DNA-directed RNA polymerase subunit, putative, expressed
MaizeGDB (Corn) Zm00025a057164 , Zm00025a009588
Brachypodium KQJ84891 , KQJ84890 , KQJ84892 , PNT61975 , PNT61974 , PNT61973 , PNT61972 , KQJ88132 , KQJ88133 , KQJ88131 , KQJ88134 , KQJ88135 , KQK03136 , KQJ84889
Barley HORVU7Hr1G076860.1 , HORVU2Hr1G115600.9 , HORVU2Hr1G115600.8 , HORVU2Hr1G115600.3 , HORVU2Hr1G115600.2 , HORVU2Hr1G115600.1 , HORVU2Hr1G115600.7 , HORVU2Hr1G115600.6 , HORVU2Hr1G115600.5 , HORVU2Hr1G115600.4 , HORVU2Hr1G115600.11 , HORVU2Hr1G115600.10
Wheat TraesCS7A02G321100 , TraesCS2B02G552400 , TraesCS7D02G318200 , TraesCS2A02G522400 , TraesCS2D02G524500 , TraesCS7B02G222200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
2 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
3 Sobic.003G123100 expressed protein K03352: anaphase-promoting complex subunit 5
4 Sobic.002G043000 HEN1, putative, expressed -
5 Sobic.006G112700 ATPOT1, putative, expressed -
6 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
7 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
8 Sobic.002G003300 - K10884: XRCC6, KU70, ATP-dependent DNA helicase 2 subunit 1
9 Sobic.008G111600 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
10 Sobic.005G079201 - -
11 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
12 Sobic.001G143600 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
13 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
14 Sobic.001G239800 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
15 Sobic.002G112600 zinc finger family protein, putative, expressed -
16 Sobic.001G024000 expressed protein K14844: pumilio homology domain family member 6
17 Sobic.007G014800 RNA recognition motif containing protein, putative, expressed -
18 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
19 Sobic.009G142000 plus-3 domain containing protein, putative, expressed -
20 Sobic.005G098800 CIP111, putative, expressed K14575: AFG2, DRG1, AAA family ATPase


Gene co-expression network
sample Sobic006G236000 Sobic006G236000 Sobic004G215900 Sobic004G215900 Sobic006G236000--Sobic004G215900 Sobic008G068100 Sobic008G068100 Sobic006G236000--Sobic008G068100 Sobic003G123100 Sobic003G123100 Sobic006G236000--Sobic003G123100 Sobic002G043000 Sobic002G043000 Sobic006G236000--Sobic002G043000 Sobic006G112700 Sobic006G112700 Sobic006G236000--Sobic006G112700 Sobic006G181800 Sobic006G181800 Sobic006G236000--Sobic006G181800 Sobic009G191500 Sobic009G191500 Sobic006G236000--Sobic009G191500 Sobic002G003300 Sobic002G003300 Sobic006G236000--Sobic002G003300 Sobic008G111600 Sobic008G111600 Sobic006G236000--Sobic008G111600 Sobic004G215900--Sobic008G068100 Sobic004G215900--Sobic006G236000 Sobic004G215900--Sobic009G191500 Sobic004G215900--Sobic002G003300 Sobic001G024000 Sobic001G024000 Sobic004G215900--Sobic001G024000 Sobic004G215900--Sobic008G111600 Sobic004G038100 Sobic004G038100 Sobic004G215900--Sobic004G038100 Sobic002G112600 Sobic002G112600 Sobic004G215900--Sobic002G112600 Sobic004G215900--Sobic002G043000 Sobic008G068100--Sobic009G191500 Sobic008G068100--Sobic004G215900 Sobic005G079201 Sobic005G079201 Sobic008G068100--Sobic005G079201 Sobic008G068100--Sobic006G236000 Sobic008G068100--Sobic002G003300 Sobic001G483800 Sobic001G483800 Sobic008G068100--Sobic001G483800 Sobic005G088900 Sobic005G088900 Sobic008G068100--Sobic005G088900 Sobic003G336500 Sobic003G336500 Sobic008G068100--Sobic003G336500 Sobic008G068100--Sobic001G024000 Sobic007G014800 Sobic007G014800 Sobic003G123100--Sobic007G014800 Sobic003G123100--Sobic006G236000 Sobic009G142000 Sobic009G142000 Sobic003G123100--Sobic009G142000 Sobic010G262100 Sobic010G262100 Sobic003G123100--Sobic010G262100 Sobic001G239800 Sobic001G239800 Sobic003G123100--Sobic001G239800 Sobic001G451300 Sobic001G451300 Sobic003G123100--Sobic001G451300 Sobic002G252100 Sobic002G252100 Sobic003G123100--Sobic002G252100 Sobic005G010900 Sobic005G010900 Sobic003G123100--Sobic005G010900 Sobic003G123100--Sobic006G112700 Sobic002G043000--Sobic008G111600 Sobic002G043000--Sobic004G215900 Sobic002G426100 Sobic002G426100 Sobic002G043000--Sobic002G426100 Sobic002G043000--Sobic006G236000 Sobic002G043000--Sobic008G068100 Sobic002G043000--Sobic006G181800 Sobic002G043000--Sobic004G038100 Sobic006G280100 Sobic006G280100 Sobic002G043000--Sobic006G280100 Sobic004G129500 Sobic004G129500 Sobic002G043000--Sobic004G129500 Sobic008G080500 Sobic008G080500 Sobic006G112700--Sobic008G080500 Sobic003G209400 Sobic003G209400 Sobic006G112700--Sobic003G209400 Sobic006G112700--Sobic001G239800 Sobic006G112700--Sobic006G236000 Sobic006G112700--Sobic009G142000 Sobic006G112700--Sobic010G262100 Sobic006G112700--Sobic003G123100 Sobic008G092800 Sobic008G092800 Sobic006G112700--Sobic008G092800 Sobic006G112700--Sobic001G451300 Sobic006G181800--Sobic008G111600 Sobic006G181800--Sobic004G038100 Sobic006G181800--Sobic002G426100 Sobic006G033101 Sobic006G033101 Sobic006G181800--Sobic006G033101 Sobic002G371600 Sobic002G371600 Sobic006G181800--Sobic002G371600 Sobic006G181800--Sobic002G043000 Sobic006G181800--Sobic008G092800 Sobic006G181800--Sobic006G236000 Sobic010G188000 Sobic010G188000 Sobic006G181800--Sobic010G188000 Sobic009G191500--Sobic008G068100 Sobic009G191500--Sobic004G215900 Sobic009G191500--Sobic001G483800 Sobic009G191500--Sobic005G079201 Sobic009G191500--Sobic005G088900 Sobic009G191500--Sobic002G003300 Sobic010G153300 Sobic010G153300 Sobic009G191500--Sobic010G153300 Sobic007G060600 Sobic007G060600 Sobic009G191500--Sobic007G060600 Sobic009G191500--Sobic003G336500 Sobic002G003300--Sobic004G215900 Sobic002G003300--Sobic009G191500 Sobic002G003300--Sobic008G068100 Sobic002G003300--Sobic008G111600 Sobic002G003300--Sobic005G088900 Sobic002G003300--Sobic006G236000 Sobic002G003300--Sobic002G043000 Sobic002G003300--Sobic001G024000 Sobic002G003300--Sobic006G181800 Sobic008G111600--Sobic002G426100 Sobic008G111600--Sobic006G181800 Sobic002G362200 Sobic002G362200 Sobic008G111600--Sobic002G362200 Sobic008G111600--Sobic004G215900 Sobic008G111600--Sobic002G043000 Sobic008G111600--Sobic001G024000 Sobic002G078100 Sobic002G078100 Sobic008G111600--Sobic002G078100 Sobic008G111600--Sobic002G003300 Sobic003G144000 Sobic003G144000 Sobic008G111600--Sobic003G144000
Octagon: transcription factors


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