Gene annotation
Transcriptome id Sobic.005G098800.1,Sobic.005G098800.2
Synonym CIP111, Sb05g008540
Functional annotation CIP111, putative, expressed
UniProt C5Y1P3 , A0A1Z5RHQ2
Pfam PF05496 PF00004 PF00004 PF05496
Panther DB PTHR23077:SF27 PTHR23077 PTHR23077 PTHR23077:SF27
NCBI CDD -
KEGG Orthology K14575; AFG2, DRG1, AAA family ATPase
Gene Ontology GO:0009378; four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair GO:0005524ATP binding GO:0005524ATP binding GO:0006281DNA repair GO:0006310DNA recombination GO:0009378four-way junction helicase activity


Orthologs (automatic annotation)
TAIR AT3G56690 : Cam interacting protein 111
RAP-DB (Rice) LOC_Os11g11340.1 : CIP111, putative, expressed
MaizeGDB (Corn) Zm00025a029684
Brachypodium KQJ88921 , KQJ88922 , PNT63896 , PNT63897 , PNT63895 , PNT63898 , PNT63899 , PNT63900
Barley HORVU1Hr1G015310.9 , HORVU1Hr1G015310.8 , HORVU1Hr1G015310.1 , HORVU1Hr1G015310.3 , HORVU1Hr1G015310.2 , HORVU1Hr1G015310.5 , HORVU1Hr1G015310.7 , HORVU1Hr1G015310.25 , HORVU1Hr1G015310.29 , HORVU4Hr1G016200.19 , HORVU4Hr1G016200.18 , HORVU4Hr1G016200.13 , HORVU4Hr1G016200.12 , HORVU4Hr1G016200.11 , HORVU4Hr1G016200.10 , HORVU4Hr1G016200.17 , HORVU4Hr1G016200.16 , HORVU4Hr1G016200.15 , HORVU4Hr1G016200.14 , HORVU1Hr1G015310.39 , HORVU1Hr1G015310.38 , HORVU1Hr1G015310.32 , HORVU1Hr1G015310.31 , HORVU1Hr1G015310.30 , HORVU1Hr1G015310.37 , HORVU1Hr1G015310.36 , HORVU1Hr1G015310.34 , HORVU1Hr1G015310.4 , HORVU1Hr1G015310.6 , HORVU1Hr1G015310.28 , HORVU1Hr1G015310.20 , HORVU1Hr1G015310.21 , HORVU1Hr1G015310.22 , HORVU1Hr1G015310.23 , HORVU1Hr1G015310.24 , HORVU1Hr1G015310.26 , HORVU1Hr1G015310.27 , HORVU1Hr1G015310.33 , HORVU1Hr1G015310.19 , HORVU1Hr1G015310.18 , HORVU1Hr1G015310.15 , HORVU1Hr1G015310.14 , HORVU1Hr1G015310.17 , HORVU1Hr1G015310.16 , HORVU1Hr1G015310.11 , HORVU1Hr1G015310.10 , HORVU1Hr1G015310.13 , HORVU1Hr1G015310.12 , HORVU1Hr1G015310.35 , HORVU4Hr1G016200.22 , HORVU4Hr1G016200.23 , HORVU4Hr1G016200.20 , HORVU4Hr1G016200.21 , HORVU4Hr1G016200.24 , HORVU4Hr1G016200.25 , HORVU4Hr1G016200.9 , HORVU4Hr1G016200.8 , HORVU4Hr1G016200.3 , HORVU4Hr1G016200.2 , HORVU4Hr1G016200.1 , HORVU4Hr1G016200.7 , HORVU4Hr1G016200.6 , HORVU4Hr1G016200.5 , HORVU4Hr1G016200.4
Wheat TraesCS1D02G073600 , TraesCS4D02G105500 , TraesCS4D02G105500 , TraesCS4B02G108300 , TraesCS1B02G089700 , TraesCS4A02G204700 , TraesCS1A02G071300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
2 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
3 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
4 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
5 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
6 Sobic.002G423400 PPR repeat containing protein, expressed -
7 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
8 Sobic.010G224700 - K17680: twinkle protein
9 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
10 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
11 Sobic.001G024000 expressed protein K14844: pumilio homology domain family member 6
12 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5
13 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
14 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
15 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
16 Sobic.007G201700 mTERF domain containing protein, expressed -
17 Sobic.006G237000 3-oxoacyl-synthase III, chloroplast precursor, putative, expressed K00648: 3-oxoacyl-[acyl-carrier-protein] synthase III
18 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
19 Sobic.010G003900 arginine N-methyltransferase 7, putative, expressed K11438: type III protein arginine methyltransferase
20 Sobic.005G010900 expressed protein K14311: nuclear pore complex protein Nup188


Gene co-expression network
sample Sobic005G098800 Sobic005G098800 Sobic003G123200 Sobic003G123200 Sobic005G098800--Sobic003G123200 Sobic008G049100 Sobic008G049100 Sobic005G098800--Sobic008G049100 Sobic010G205900 Sobic010G205900 Sobic005G098800--Sobic010G205900 Sobic009G246500 Sobic009G246500 Sobic005G098800--Sobic009G246500 Sobic008G163500 Sobic008G163500 Sobic005G098800--Sobic008G163500 Sobic002G423400 Sobic002G423400 Sobic005G098800--Sobic002G423400 Sobic005G028100 Sobic005G028100 Sobic005G098800--Sobic005G028100 Sobic010G224700 Sobic010G224700 Sobic005G098800--Sobic010G224700 Sobic004G215900 Sobic004G215900 Sobic005G098800--Sobic004G215900 Sobic003G123200--Sobic005G098800 Sobic003G123200--Sobic008G163500 Sobic003G123200--Sobic010G205900 Sobic003G123200--Sobic009G246500 Sobic003G123200--Sobic008G049100 Sobic003G123200--Sobic005G028100 Sobic003G123200--Sobic002G423400 Sobic006G198600 Sobic006G198600 Sobic003G123200--Sobic006G198600 Sobic003G123200--Sobic010G224700 Sobic008G049100--Sobic010G205900 Sobic002G071400 Sobic002G071400 Sobic008G049100--Sobic002G071400 Sobic008G049100--Sobic009G246500 Sobic003G199300 Sobic003G199300 Sobic008G049100--Sobic003G199300 Sobic008G049100--Sobic003G123200 Sobic008G049100--Sobic005G098800 Sobic002G234300 Sobic002G234300 Sobic008G049100--Sobic002G234300 Sobic008G049100--Sobic008G163500 Sobic006G193300 Sobic006G193300 Sobic008G049100--Sobic006G193300 Sobic010G205900--Sobic008G049100 Sobic010G205900--Sobic003G123200 Sobic010G205900--Sobic009G246500 Sobic010G205900--Sobic005G028100 Sobic010G205900--Sobic002G071400 Sobic010G205900--Sobic005G098800 Sobic010G205900--Sobic008G163500 Sobic010G205900--Sobic003G199300 Sobic001G024000 Sobic001G024000 Sobic010G205900--Sobic001G024000 Sobic009G246500--Sobic008G049100 Sobic009G246500--Sobic010G205900 Sobic009G246500--Sobic003G123200 Sobic009G246500--Sobic008G163500 Sobic009G246500--Sobic005G098800 Sobic009G246500--Sobic002G071400 Sobic009G246500--Sobic002G423400 Sobic004G224600 Sobic004G224600 Sobic009G246500--Sobic004G224600 Sobic009G101200 Sobic009G101200 Sobic009G246500--Sobic009G101200 Sobic008G163500--Sobic005G028100 Sobic008G163500--Sobic003G123200 Sobic008G163500--Sobic009G246500 Sobic008G163500--Sobic010G205900 Sobic008G163500--Sobic008G049100 Sobic008G163500--Sobic005G098800 Sobic001G422500 Sobic001G422500 Sobic008G163500--Sobic001G422500 Sobic008G163500--Sobic010G224700 Sobic004G036700 Sobic004G036700 Sobic008G163500--Sobic004G036700 Sobic002G423400--Sobic003G123200 Sobic002G423400--Sobic009G246500 Sobic002G423400--Sobic005G098800 Sobic002G423400--Sobic010G224700 Sobic002G423400--Sobic010G205900 Sobic002G423400--Sobic008G049100 Sobic007G201700 Sobic007G201700 Sobic002G423400--Sobic007G201700 Sobic006G208400 Sobic006G208400 Sobic002G423400--Sobic006G208400 Sobic001G119600 Sobic001G119600 Sobic002G423400--Sobic001G119600 Sobic005G028100--Sobic004G036700 Sobic005G028100--Sobic008G163500 Sobic006G225400 Sobic006G225400 Sobic005G028100--Sobic006G225400 Sobic005G028100--Sobic010G205900 Sobic005G028100--Sobic003G123200 Sobic003G432300 Sobic003G432300 Sobic005G028100--Sobic003G432300 Sobic002G126800 Sobic002G126800 Sobic005G028100--Sobic002G126800 Sobic001G373000 Sobic001G373000 Sobic005G028100--Sobic001G373000 Sobic002G132600 Sobic002G132600 Sobic005G028100--Sobic002G132600 Sobic002G378100 Sobic002G378100 Sobic010G224700--Sobic002G378100 Sobic008G017100 Sobic008G017100 Sobic010G224700--Sobic008G017100 Sobic004G027300 Sobic004G027300 Sobic010G224700--Sobic004G027300 Sobic010G224700--Sobic001G119600 Sobic010G224700--Sobic003G123200 Sobic010G224700--Sobic008G163500 Sobic001G049800 Sobic001G049800 Sobic010G224700--Sobic001G049800 Sobic003G425100 Sobic003G425100 Sobic010G224700--Sobic003G425100 Sobic010G224700--Sobic003G199300 Sobic008G068100 Sobic008G068100 Sobic004G215900--Sobic008G068100 Sobic006G236000 Sobic006G236000 Sobic004G215900--Sobic006G236000 Sobic009G191500 Sobic009G191500 Sobic004G215900--Sobic009G191500 Sobic002G003300 Sobic002G003300 Sobic004G215900--Sobic002G003300 Sobic004G215900--Sobic001G024000 Sobic008G111600 Sobic008G111600 Sobic004G215900--Sobic008G111600 Sobic004G038100 Sobic004G038100 Sobic004G215900--Sobic004G038100 Sobic002G112600 Sobic002G112600 Sobic004G215900--Sobic002G112600 Sobic002G043000 Sobic002G043000 Sobic004G215900--Sobic002G043000
Octagon: transcription factors


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