Gene annotation
Transcriptome id Sobic.002G423400.2,Sobic.002G423400.3,Sobic.002G423400.5,Sobic.002G423400.6,Sobic.002G423400.7,Sobic.002G423400.4
Synonym Sb02g043430
Functional annotation PPR repeat containing protein, expressed
UniProt A0A1W0W7Z0 , A0A1W0W7Z1 , A0A1W0W7X8
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF463
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G13040 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os07g48850.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a049212
Brachypodium KQK14551 , KQK14550
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
2 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
3 Sobic.005G098800 CIP111, putative, expressed K14575: AFG2, DRG1, AAA family ATPase
4 Sobic.010G224700 - K17680: twinkle protein
5 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
6 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
7 Sobic.007G201700 mTERF domain containing protein, expressed -
8 Sobic.006G208400 expressed protein K14318: nuclear pore complex protein Nup88
9 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
10 Sobic.005G000300 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
11 Sobic.006G128400 PPR repeat containing protein, expressed -
12 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
13 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
14 Sobic.009G211200 tRNAHis guanylyltransferase family protein, expressed K10761: tRNA(His) guanylyltransferase
15 Sobic.001G322600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
17 Sobic.003G014700 pentatricopeptide, putative, expressed -
18 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
19 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
20 Sobic.004G224600 expressed protein -


Gene co-expression network
sample Sobic002G423400 Sobic002G423400 Sobic003G123200 Sobic003G123200 Sobic002G423400--Sobic003G123200 Sobic009G246500 Sobic009G246500 Sobic002G423400--Sobic009G246500 Sobic005G098800 Sobic005G098800 Sobic002G423400--Sobic005G098800 Sobic010G224700 Sobic010G224700 Sobic002G423400--Sobic010G224700 Sobic010G205900 Sobic010G205900 Sobic002G423400--Sobic010G205900 Sobic008G049100 Sobic008G049100 Sobic002G423400--Sobic008G049100 Sobic007G201700 Sobic007G201700 Sobic002G423400--Sobic007G201700 Sobic006G208400 Sobic006G208400 Sobic002G423400--Sobic006G208400 Sobic001G119600 Sobic001G119600 Sobic002G423400--Sobic001G119600 Sobic003G123200--Sobic005G098800 Sobic008G163500 Sobic008G163500 Sobic003G123200--Sobic008G163500 Sobic003G123200--Sobic010G205900 Sobic003G123200--Sobic009G246500 Sobic003G123200--Sobic008G049100 Sobic005G028100 Sobic005G028100 Sobic003G123200--Sobic005G028100 Sobic003G123200--Sobic002G423400 Sobic006G198600 Sobic006G198600 Sobic003G123200--Sobic006G198600 Sobic003G123200--Sobic010G224700 Sobic009G246500--Sobic008G049100 Sobic009G246500--Sobic010G205900 Sobic009G246500--Sobic003G123200 Sobic009G246500--Sobic008G163500 Sobic009G246500--Sobic005G098800 Sobic002G071400 Sobic002G071400 Sobic009G246500--Sobic002G071400 Sobic009G246500--Sobic002G423400 Sobic004G224600 Sobic004G224600 Sobic009G246500--Sobic004G224600 Sobic009G101200 Sobic009G101200 Sobic009G246500--Sobic009G101200 Sobic005G098800--Sobic003G123200 Sobic005G098800--Sobic008G049100 Sobic005G098800--Sobic010G205900 Sobic005G098800--Sobic009G246500 Sobic005G098800--Sobic008G163500 Sobic005G098800--Sobic002G423400 Sobic005G098800--Sobic005G028100 Sobic005G098800--Sobic010G224700 Sobic004G215900 Sobic004G215900 Sobic005G098800--Sobic004G215900 Sobic002G378100 Sobic002G378100 Sobic010G224700--Sobic002G378100 Sobic008G017100 Sobic008G017100 Sobic010G224700--Sobic008G017100 Sobic004G027300 Sobic004G027300 Sobic010G224700--Sobic004G027300 Sobic010G224700--Sobic001G119600 Sobic010G224700--Sobic003G123200 Sobic010G224700--Sobic008G163500 Sobic001G049800 Sobic001G049800 Sobic010G224700--Sobic001G049800 Sobic003G425100 Sobic003G425100 Sobic010G224700--Sobic003G425100 Sobic003G199300 Sobic003G199300 Sobic010G224700--Sobic003G199300 Sobic010G205900--Sobic008G049100 Sobic010G205900--Sobic003G123200 Sobic010G205900--Sobic009G246500 Sobic010G205900--Sobic005G028100 Sobic010G205900--Sobic002G071400 Sobic010G205900--Sobic005G098800 Sobic010G205900--Sobic008G163500 Sobic010G205900--Sobic003G199300 Sobic001G024000 Sobic001G024000 Sobic010G205900--Sobic001G024000 Sobic008G049100--Sobic010G205900 Sobic008G049100--Sobic002G071400 Sobic008G049100--Sobic009G246500 Sobic008G049100--Sobic003G199300 Sobic008G049100--Sobic003G123200 Sobic008G049100--Sobic005G098800 Sobic002G234300 Sobic002G234300 Sobic008G049100--Sobic002G234300 Sobic008G049100--Sobic008G163500 Sobic006G193300 Sobic006G193300 Sobic008G049100--Sobic006G193300 Sobic002G112600 Sobic002G112600 Sobic007G201700--Sobic002G112600 Sobic007G201700--Sobic002G423400 Sobic007G201700--Sobic001G119600 Sobic007G201700--Sobic009G246500 Sobic007G201700--Sobic010G224700 Sobic007G201700--Sobic008G049100 Sobic006G128400 Sobic006G128400 Sobic007G201700--Sobic006G128400 Sobic007G201700--Sobic008G163500 Sobic007G201700--Sobic005G098800 Sobic004G354000 Sobic004G354000 Sobic006G208400--Sobic004G354000 Sobic010G236600 Sobic010G236600 Sobic006G208400--Sobic010G236600 Sobic006G208400--Sobic008G017100 Sobic006G208400--Sobic010G224700 Sobic001G408300 Sobic001G408300 Sobic006G208400--Sobic001G408300 Sobic001G460500 Sobic001G460500 Sobic006G208400--Sobic001G460500 Sobic006G208400--Sobic002G423400 Sobic002G427300 Sobic002G427300 Sobic006G208400--Sobic002G427300 Sobic003G314700 Sobic003G314700 Sobic006G208400--Sobic003G314700 Sobic002G262100 Sobic002G262100 Sobic001G119600--Sobic002G262100 Sobic001G119600--Sobic010G224700 Sobic001G119600--Sobic003G123200 Sobic001G119600--Sobic003G425100 Sobic001G119600--Sobic002G378100 Sobic001G119600--Sobic008G163500 Sobic001G119600--Sobic008G049100 Sobic001G119600--Sobic006G198600 Sobic006G231800 Sobic006G231800 Sobic001G119600--Sobic006G231800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.