Gene annotation
Transcriptome id Sobic.006G208400.2,Sobic.006G208400.1
Synonym MOS7, Sb06g027930
Functional annotation expressed protein
UniProt C5YFK4 , A0A1B6PMX0
Pfam PF10168
Panther DB PTHR13257 PTHR13257:SF0
NCBI CDD KOG4460; Nuclear pore complex, Nup88/rNup84 component
KEGG Orthology K14318; nuclear pore complex protein Nup88
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G05680 : nuclear pore complex protein-related
RAP-DB (Rice) LOC_Os04g51900.1 : expressed protein
MaizeGDB (Corn) Zm00025a056981
Brachypodium PNT61808
Barley HORVU2Hr1G100330.4 , HORVU2Hr1G100330.3 , HORVU2Hr1G100330.11 , HORVU2Hr1G100330.10 , HORVU2Hr1G100330.13 , HORVU2Hr1G100330.12 , HORVU2Hr1G100330.15 , HORVU2Hr1G100330.14 , HORVU2Hr1G100330.16 , HORVU2Hr1G100330.9 , HORVU2Hr1G100330.8 , HORVU2Hr1G100330.5 , HORVU2Hr1G100330.7 , HORVU2Hr1G100330.6 , HORVU2Hr1G100330.1 , HORVU2Hr1G100330.2
Wheat TraesCS2B02G450900 , TraesCS2D02G427900 , TraesCS2A02G430300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G354000 OsSigP1 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed -
2 Sobic.010G236600 oligopeptidase, putative, expressed K01410: mitochondrial intermediate peptidase
3 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
4 Sobic.010G224700 - K17680: twinkle protein
5 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
7 Sobic.002G423400 PPR repeat containing protein, expressed -
8 Sobic.002G427300 protein phosphotase protein, putative, expressed -
9 Sobic.003G314700 expressed protein -
10 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
11 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
12 Sobic.006G140600 HEAT repeat family protein, putative, expressed K16578: CLIP-associating protein 1/2
13 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
14 Sobic.001G027100 FEN1A - Putative flap endonuclease protein, expressed K04799: FEN1, flap endonuclease-1
15 Sobic.004G342300 expressed protein -
16 Sobic.001G385400 guanine nucleotide exchange factor, putative, expressed -
17 Sobic.010G138900 cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed K11991: tRNA(adenine34) deaminase
18 Sobic.002G141900 -(PubMedID : 26976818)@Citrate transporter protein, putative, expressed -
19 Sobic.008G088842 - -
20 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93


Gene co-expression network
sample Sobic006G208400 Sobic006G208400 Sobic004G354000 Sobic004G354000 Sobic006G208400--Sobic004G354000 Sobic010G236600 Sobic010G236600 Sobic006G208400--Sobic010G236600 Sobic008G017100 Sobic008G017100 Sobic006G208400--Sobic008G017100 Sobic010G224700 Sobic010G224700 Sobic006G208400--Sobic010G224700 Sobic001G408300 Sobic001G408300 Sobic006G208400--Sobic001G408300 Sobic001G460500 Sobic001G460500 Sobic006G208400--Sobic001G460500 Sobic002G423400 Sobic002G423400 Sobic006G208400--Sobic002G423400 Sobic002G427300 Sobic002G427300 Sobic006G208400--Sobic002G427300 Sobic003G314700 Sobic003G314700 Sobic006G208400--Sobic003G314700 Sobic004G354000--Sobic006G208400 Sobic004G342300 Sobic004G342300 Sobic004G354000--Sobic004G342300 Sobic004G354000--Sobic008G017100 Sobic002G356600 Sobic002G356600 Sobic004G354000--Sobic002G356600 Sobic001G322600 Sobic001G322600 Sobic004G354000--Sobic001G322600 Sobic002G079100 Sobic002G079100 Sobic004G354000--Sobic002G079100 Sobic004G356200 Sobic004G356200 Sobic004G354000--Sobic004G356200 Sobic001G027100 Sobic001G027100 Sobic004G354000--Sobic001G027100 Sobic006G236000 Sobic006G236000 Sobic004G354000--Sobic006G236000 Sobic010G236600--Sobic006G208400 Sobic010G188000 Sobic010G188000 Sobic010G236600--Sobic010G188000 Sobic009G045900 Sobic009G045900 Sobic010G236600--Sobic009G045900 Sobic010G236600--Sobic001G460500 Sobic003G008600 Sobic003G008600 Sobic010G236600--Sobic003G008600 Sobic002G145300 Sobic002G145300 Sobic010G236600--Sobic002G145300 Sobic010G250800 Sobic010G250800 Sobic010G236600--Sobic010G250800 Sobic001G368100 Sobic001G368100 Sobic010G236600--Sobic001G368100 Sobic002G056400 Sobic002G056400 Sobic010G236600--Sobic002G056400 Sobic004G119400 Sobic004G119400 Sobic008G017100--Sobic004G119400 Sobic006G269800 Sobic006G269800 Sobic008G017100--Sobic006G269800 Sobic008G017100--Sobic010G224700 Sobic006G185200 Sobic006G185200 Sobic008G017100--Sobic006G185200 Sobic008G017100--Sobic002G079100 Sobic002G378100 Sobic002G378100 Sobic008G017100--Sobic002G378100 Sobic004G351800 Sobic004G351800 Sobic008G017100--Sobic004G351800 Sobic007G171100 Sobic007G171100 Sobic008G017100--Sobic007G171100 Sobic008G147200 Sobic008G147200 Sobic008G017100--Sobic008G147200 Sobic010G224700--Sobic002G378100 Sobic010G224700--Sobic008G017100 Sobic004G027300 Sobic004G027300 Sobic010G224700--Sobic004G027300 Sobic001G119600 Sobic001G119600 Sobic010G224700--Sobic001G119600 Sobic003G123200 Sobic003G123200 Sobic010G224700--Sobic003G123200 Sobic008G163500 Sobic008G163500 Sobic010G224700--Sobic008G163500 Sobic001G049800 Sobic001G049800 Sobic010G224700--Sobic001G049800 Sobic003G425100 Sobic003G425100 Sobic010G224700--Sobic003G425100 Sobic003G199300 Sobic003G199300 Sobic010G224700--Sobic003G199300 Sobic007G006800 Sobic007G006800 Sobic001G408300--Sobic007G006800 Sobic001G408300--Sobic010G250800 Sobic010G065800 Sobic010G065800 Sobic001G408300--Sobic010G065800 Sobic010G038800 Sobic010G038800 Sobic001G408300--Sobic010G038800 Sobic001G061800 Sobic001G061800 Sobic001G408300--Sobic001G061800 Sobic001G408300--Sobic006G208400 Sobic005G088900 Sobic005G088900 Sobic001G408300--Sobic005G088900 Sobic009G010300 Sobic009G010300 Sobic001G408300--Sobic009G010300 Sobic010G252700 Sobic010G252700 Sobic001G408300--Sobic010G252700 Sobic005G163700 Sobic005G163700 Sobic001G460500--Sobic005G163700 Sobic002G423500 Sobic002G423500 Sobic001G460500--Sobic002G423500 Sobic002G014400 Sobic002G014400 Sobic001G460500--Sobic002G014400 Sobic004G208500 Sobic004G208500 Sobic001G460500--Sobic004G208500 Sobic010G081700 Sobic010G081700 Sobic001G460500--Sobic010G081700 Sobic004G047200 Sobic004G047200 Sobic001G460500--Sobic004G047200 Sobic002G412700 Sobic002G412700 Sobic001G460500--Sobic002G412700 Sobic001G251600 Sobic001G251600 Sobic001G460500--Sobic001G251600 Sobic003G099300 Sobic003G099300 Sobic001G460500--Sobic003G099300 Sobic002G423400--Sobic003G123200 Sobic009G246500 Sobic009G246500 Sobic002G423400--Sobic009G246500 Sobic005G098800 Sobic005G098800 Sobic002G423400--Sobic005G098800 Sobic002G423400--Sobic010G224700 Sobic010G205900 Sobic010G205900 Sobic002G423400--Sobic010G205900 Sobic008G049100 Sobic008G049100 Sobic002G423400--Sobic008G049100 Sobic007G201700 Sobic007G201700 Sobic002G423400--Sobic007G201700 Sobic002G423400--Sobic006G208400 Sobic002G423400--Sobic001G119600 Sobic002G427300--Sobic006G208400 Sobic001G119800 Sobic001G119800 Sobic002G427300--Sobic001G119800 Sobic006G281000 Sobic006G281000 Sobic002G427300--Sobic006G281000 Sobic006G140600 Sobic006G140600 Sobic002G427300--Sobic006G140600 Sobic010G085200 Sobic010G085200 Sobic002G427300--Sobic010G085200 Sobic004G006700 Sobic004G006700 Sobic002G427300--Sobic004G006700 Sobic002G427300--Sobic003G314700 Sobic002G427300--Sobic001G460500 Sobic001G036800 Sobic001G036800 Sobic002G427300--Sobic001G036800 Sobic003G029600 Sobic003G029600 Sobic003G314700--Sobic003G029600 Sobic008G124800 Sobic008G124800 Sobic003G314700--Sobic008G124800 Sobic001G437400 Sobic001G437400 Sobic003G314700--Sobic001G437400 Sobic003G240700 Sobic003G240700 Sobic003G314700--Sobic003G240700 Sobic003G405500 Sobic003G405500 Sobic003G314700--Sobic003G405500 Sobic007G019300 Sobic007G019300 Sobic003G314700--Sobic007G019300 Sobic004G204100 Sobic004G204100 Sobic003G314700--Sobic004G204100 Sobic001G426600 Sobic001G426600 Sobic003G314700--Sobic001G426600 Sobic003G314700--Sobic002G412700
Octagon: transcription factors


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