Gene annotation
Transcriptome id Sobic.004G354000.1,Sobic.004G354000.2
Synonym Sb04g038070
Functional annotation OsSigP1 - Putative Type I Signal Peptidase homologue
employs a putative Ser/His catalytic dyad, expressed
UniProt C5XWN3 , A0A1Z5RQY4
Pfam PF12854 PF13041 PF13812 PF12854 PF13041
Panther DB PTHR24015 PTHR24015:SF279
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G38730 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os02g58139.1 : OsSigP1 - Putative Type I Signal Peptidase homologue; employs a putative Ser/His catalytic dyad, expressed
MaizeGDB (Corn) Zm00025a022660
Brachypodium KQK02087
Barley HORVU6Hr1G087430.14 , HORVU6Hr1G087430.12 , HORVU6Hr1G087430.13 , HORVU6Hr1G087430.10 , HORVU6Hr1G087430.11 , HORVU6Hr1G087430.6 , HORVU6Hr1G087430.1 , HORVU6Hr1G087430.4 , HORVU6Hr1G087430.7 , HORVU6Hr1G087430.2 , HORVU6Hr1G087430.3 , HORVU6Hr1G087430.8
Wheat TraesCS6A02G371200 , TraesCS6B02G408200 , TraesCS6D02G355100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G208400 expressed protein K14318: nuclear pore complex protein Nup88
2 Sobic.004G342300 expressed protein -
3 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
4 Sobic.002G356600 ZCW7, putative, expressed -
5 Sobic.001G322600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
7 Sobic.004G356200 expressed protein -
8 Sobic.001G027100 FEN1A - Putative flap endonuclease protein, expressed K04799: FEN1, flap endonuclease-1
9 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
10 Sobic.006G274100 ribosome biogenesis regulatory protein, putative, expressed K14852: regulator of ribosome biosynthesis
11 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
12 Sobic.008G101900 plastid division regulator MinE, putative, expressed -
13 Sobic.007G094500 KH domain containing protein, putative, expressed -
14 Sobic.004G119400 ATP-binding domain-containing protein, putative, expressed -
15 Sobic.003G399100 pentatricopeptide, putative, expressed -
16 Sobic.007G047600 expressed protein -
17 Sobic.010G224700 - K17680: twinkle protein
18 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
19 Sobic.010G262100 expressed protein -
20 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase


Gene co-expression network
sample Sobic004G354000 Sobic004G354000 Sobic006G208400 Sobic006G208400 Sobic004G354000--Sobic006G208400 Sobic004G342300 Sobic004G342300 Sobic004G354000--Sobic004G342300 Sobic008G017100 Sobic008G017100 Sobic004G354000--Sobic008G017100 Sobic002G356600 Sobic002G356600 Sobic004G354000--Sobic002G356600 Sobic001G322600 Sobic001G322600 Sobic004G354000--Sobic001G322600 Sobic002G079100 Sobic002G079100 Sobic004G354000--Sobic002G079100 Sobic004G356200 Sobic004G356200 Sobic004G354000--Sobic004G356200 Sobic001G027100 Sobic001G027100 Sobic004G354000--Sobic001G027100 Sobic006G236000 Sobic006G236000 Sobic004G354000--Sobic006G236000 Sobic006G208400--Sobic004G354000 Sobic010G236600 Sobic010G236600 Sobic006G208400--Sobic010G236600 Sobic006G208400--Sobic008G017100 Sobic010G224700 Sobic010G224700 Sobic006G208400--Sobic010G224700 Sobic001G408300 Sobic001G408300 Sobic006G208400--Sobic001G408300 Sobic001G460500 Sobic001G460500 Sobic006G208400--Sobic001G460500 Sobic002G423400 Sobic002G423400 Sobic006G208400--Sobic002G423400 Sobic002G427300 Sobic002G427300 Sobic006G208400--Sobic002G427300 Sobic003G314700 Sobic003G314700 Sobic006G208400--Sobic003G314700 Sobic004G342300--Sobic004G354000 Sobic004G038100 Sobic004G038100 Sobic004G342300--Sobic004G038100 Sobic003G360300 Sobic003G360300 Sobic004G342300--Sobic003G360300 Sobic008G080500 Sobic008G080500 Sobic004G342300--Sobic008G080500 Sobic010G032300 Sobic010G032300 Sobic004G342300--Sobic010G032300 Sobic004G342300--Sobic006G208400 Sobic010G262100 Sobic010G262100 Sobic004G342300--Sobic010G262100 Sobic006G181800 Sobic006G181800 Sobic004G342300--Sobic006G181800 Sobic003G259600 Sobic003G259600 Sobic004G342300--Sobic003G259600 Sobic004G119400 Sobic004G119400 Sobic008G017100--Sobic004G119400 Sobic006G269800 Sobic006G269800 Sobic008G017100--Sobic006G269800 Sobic008G017100--Sobic010G224700 Sobic006G185200 Sobic006G185200 Sobic008G017100--Sobic006G185200 Sobic008G017100--Sobic002G079100 Sobic002G378100 Sobic002G378100 Sobic008G017100--Sobic002G378100 Sobic004G351800 Sobic004G351800 Sobic008G017100--Sobic004G351800 Sobic007G171100 Sobic007G171100 Sobic008G017100--Sobic007G171100 Sobic008G147200 Sobic008G147200 Sobic008G017100--Sobic008G147200 Sobic007G134100 Sobic007G134100 Sobic002G356600--Sobic007G134100 Sobic002G356600--Sobic004G354000 Sobic003G209400 Sobic003G209400 Sobic002G356600--Sobic003G209400 Sobic006G271700 Sobic006G271700 Sobic002G356600--Sobic006G271700 Sobic002G309200 Sobic002G309200 Sobic002G356600--Sobic002G309200 Sobic004G034700 Sobic004G034700 Sobic002G356600--Sobic004G034700 Sobic002G412700 Sobic002G412700 Sobic002G356600--Sobic002G412700 Sobic002G356600--Sobic008G017100 Sobic009G151800 Sobic009G151800 Sobic002G356600--Sobic009G151800 Sobic010G083900 Sobic010G083900 Sobic001G322600--Sobic010G083900 Sobic009G163600 Sobic009G163600 Sobic001G322600--Sobic009G163600 Sobic002G344500 Sobic002G344500 Sobic001G322600--Sobic002G344500 Sobic003G014700 Sobic003G014700 Sobic001G322600--Sobic003G014700 Sobic001G322600--Sobic004G354000 Sobic001G322600--Sobic010G224700 Sobic003G407600 Sobic003G407600 Sobic001G322600--Sobic003G407600 Sobic005G028300 Sobic005G028300 Sobic001G322600--Sobic005G028300 Sobic001G322600--Sobic002G378100 Sobic003G124600 Sobic003G124600 Sobic002G079100--Sobic003G124600 Sobic001G448100 Sobic001G448100 Sobic002G079100--Sobic001G448100 Sobic002G079100--Sobic008G017100 Sobic002G079100--Sobic008G080500 Sobic002G380100 Sobic002G380100 Sobic002G079100--Sobic002G380100 Sobic002G292800 Sobic002G292800 Sobic002G079100--Sobic002G292800 Sobic010G278600 Sobic010G278600 Sobic002G079100--Sobic010G278600 Sobic006G245900 Sobic006G245900 Sobic002G079100--Sobic006G245900 Sobic001G482200 Sobic001G482200 Sobic002G079100--Sobic001G482200 Sobic001G200200 Sobic001G200200 Sobic004G356200--Sobic001G200200 Sobic002G371600 Sobic002G371600 Sobic004G356200--Sobic002G371600 Sobic005G031000 Sobic005G031000 Sobic004G356200--Sobic005G031000 Sobic001G248100 Sobic001G248100 Sobic004G356200--Sobic001G248100 Sobic002G137601 Sobic002G137601 Sobic004G356200--Sobic002G137601 Sobic002G160700 Sobic002G160700 Sobic004G356200--Sobic002G160700 Sobic007G047600 Sobic007G047600 Sobic004G356200--Sobic007G047600 Sobic004G030400 Sobic004G030400 Sobic004G356200--Sobic004G030400 Sobic001G085800 Sobic001G085800 Sobic004G356200--Sobic001G085800 Sobic003G123200 Sobic003G123200 Sobic001G027100--Sobic003G123200 Sobic001G027100--Sobic006G208400 Sobic001G027100--Sobic004G354000 Sobic006G193300 Sobic006G193300 Sobic001G027100--Sobic006G193300 Sobic002G141900 Sobic002G141900 Sobic001G027100--Sobic002G141900 Sobic005G028100 Sobic005G028100 Sobic001G027100--Sobic005G028100 Sobic001G027100--Sobic001G322600 Sobic001G027100--Sobic004G119400 Sobic001G027100--Sobic002G344500 Sobic004G215900 Sobic004G215900 Sobic006G236000--Sobic004G215900 Sobic008G068100 Sobic008G068100 Sobic006G236000--Sobic008G068100 Sobic003G123100 Sobic003G123100 Sobic006G236000--Sobic003G123100 Sobic002G043000 Sobic002G043000 Sobic006G236000--Sobic002G043000 Sobic006G112700 Sobic006G112700 Sobic006G236000--Sobic006G112700 Sobic006G236000--Sobic006G181800 Sobic009G191500 Sobic009G191500 Sobic006G236000--Sobic009G191500 Sobic002G003300 Sobic002G003300 Sobic006G236000--Sobic002G003300 Sobic008G111600 Sobic008G111600 Sobic006G236000--Sobic008G111600
Octagon: transcription factors


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