Gene annotation
Transcriptome id Sobic.004G119400.1,Sobic.004G119400.6,Sobic.004G119400.5,Sobic.004G119400.4,Sobic.004G119400.2,Sobic.004G119400.3
Synonym RSY3
Functional annotation ATP-binding domain-containing protein, putative, expressed
UniProt A0A1Z5RLZ3 , A0A194YP65 , A0A194YP35 , A0A1Z5RMF1
Pfam PF01171
Panther DB PTHR11807 PTHR11807:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016879; ligase activity, forming carbon-nitrogen bonds GO:0008033tRNA processing GO:0005737cytoplasm GO:0005524ATP binding GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT3G24560 : Adenine nucleotide alpha hydrolases-like superfamily protein
RAP-DB (Rice) LOC_Os02g16670.1 : ATP-binding domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a019859
Brachypodium -
Barley HORVU6Hr1G036060.22 , HORVU6Hr1G036060.23 , HORVU6Hr1G036060.20 , HORVU6Hr1G036060.21 , HORVU6Hr1G036060.24 , HORVU6Hr1G036060.25 , HORVU6Hr1G036060.19 , HORVU6Hr1G036060.18 , HORVU6Hr1G036060.13 , HORVU6Hr1G036060.12 , HORVU6Hr1G036060.11 , HORVU6Hr1G036060.10 , HORVU6Hr1G036060.17 , HORVU6Hr1G036060.16 , HORVU6Hr1G036060.15 , HORVU6Hr1G036060.14 , HORVU6Hr1G036060.8 , HORVU6Hr1G036060.3 , HORVU6Hr1G036060.2 , HORVU6Hr1G036060.4 , HORVU6Hr1G036060.7 , HORVU6Hr1G036060.6 , HORVU6Hr1G036060.5
Wheat TraesCS6A02G180300 , TraesCS6B02G205200 , TraesCS6D02G164900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
2 Sobic.010G224700 - K17680: twinkle protein
3 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
4 Sobic.007G094500 KH domain containing protein, putative, expressed -
5 Sobic.002G380100 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
6 Sobic.001G429600 HEAT repeat family protein, putative, expressed -
7 Sobic.002G309200 FAR1 family protein, expressed -
8 Sobic.003G070100 expressed protein -
9 Sobic.001G540800 DNA binding protein, putative, expressed -
10 Sobic.001G246500 GTPase of unknown function domain containing protein, putative, expressed -
11 Sobic.002G431400 - -
12 Sobic.006G185200 RNA polymerase IV subunit, putative, expressed K16250: DNA-directed RNA polymerase IV subunit 1
13 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
14 Sobic.004G354000 OsSigP1 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed -
15 Sobic.006G274100 ribosome biogenesis regulatory protein, putative, expressed K14852: regulator of ribosome biosynthesis
16 Sobic.003G409200 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
17 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
18 Sobic.003G052800 RST1, putative, expressed -
19 Sobic.006G131200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03018: RPC1, DNA-directed RNA polymerase III subunit RPC1
20 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -


Gene co-expression network
sample Sobic004G119400 Sobic004G119400 Sobic008G017100 Sobic008G017100 Sobic004G119400--Sobic008G017100 Sobic010G224700 Sobic010G224700 Sobic004G119400--Sobic010G224700 Sobic006G269800 Sobic006G269800 Sobic004G119400--Sobic006G269800 Sobic007G094500 Sobic007G094500 Sobic004G119400--Sobic007G094500 Sobic002G380100 Sobic002G380100 Sobic004G119400--Sobic002G380100 Sobic001G429600 Sobic001G429600 Sobic004G119400--Sobic001G429600 Sobic002G309200 Sobic002G309200 Sobic004G119400--Sobic002G309200 Sobic003G070100 Sobic003G070100 Sobic004G119400--Sobic003G070100 Sobic001G540800 Sobic001G540800 Sobic004G119400--Sobic001G540800 Sobic008G017100--Sobic004G119400 Sobic008G017100--Sobic006G269800 Sobic008G017100--Sobic010G224700 Sobic006G185200 Sobic006G185200 Sobic008G017100--Sobic006G185200 Sobic002G079100 Sobic002G079100 Sobic008G017100--Sobic002G079100 Sobic002G378100 Sobic002G378100 Sobic008G017100--Sobic002G378100 Sobic004G351800 Sobic004G351800 Sobic008G017100--Sobic004G351800 Sobic007G171100 Sobic007G171100 Sobic008G017100--Sobic007G171100 Sobic008G147200 Sobic008G147200 Sobic008G017100--Sobic008G147200 Sobic010G224700--Sobic002G378100 Sobic010G224700--Sobic008G017100 Sobic004G027300 Sobic004G027300 Sobic010G224700--Sobic004G027300 Sobic001G119600 Sobic001G119600 Sobic010G224700--Sobic001G119600 Sobic003G123200 Sobic003G123200 Sobic010G224700--Sobic003G123200 Sobic008G163500 Sobic008G163500 Sobic010G224700--Sobic008G163500 Sobic001G049800 Sobic001G049800 Sobic010G224700--Sobic001G049800 Sobic003G425100 Sobic003G425100 Sobic010G224700--Sobic003G425100 Sobic003G199300 Sobic003G199300 Sobic010G224700--Sobic003G199300 Sobic002G145800 Sobic002G145800 Sobic006G269800--Sobic002G145800 Sobic003G052800 Sobic003G052800 Sobic006G269800--Sobic003G052800 Sobic006G269800--Sobic008G147200 Sobic006G269800--Sobic008G017100 Sobic001G393900 Sobic001G393900 Sobic006G269800--Sobic001G393900 Sobic002G043100 Sobic002G043100 Sobic006G269800--Sobic002G043100 Sobic001G417500 Sobic001G417500 Sobic006G269800--Sobic001G417500 Sobic004G107200 Sobic004G107200 Sobic006G269800--Sobic004G107200 Sobic002G425500 Sobic002G425500 Sobic006G269800--Sobic002G425500 Sobic007G094500--Sobic004G119400 Sobic007G094500--Sobic008G017100 Sobic004G354000 Sobic004G354000 Sobic007G094500--Sobic004G354000 Sobic007G094500--Sobic002G380100 Sobic007G094500--Sobic002G079100 Sobic007G094500--Sobic010G224700 Sobic006G245900 Sobic006G245900 Sobic007G094500--Sobic006G245900 Sobic002G431400 Sobic002G431400 Sobic007G094500--Sobic002G431400 Sobic002G048700 Sobic002G048700 Sobic007G094500--Sobic002G048700 Sobic002G380100--Sobic002G079100 Sobic002G380100--Sobic004G119400 Sobic002G380100--Sobic008G017100 Sobic006G111200 Sobic006G111200 Sobic002G380100--Sobic006G111200 Sobic001G448100 Sobic001G448100 Sobic002G380100--Sobic001G448100 Sobic003G185250 Sobic003G185250 Sobic002G380100--Sobic003G185250 Sobic002G380100--Sobic003G070100 Sobic010G050700 Sobic010G050700 Sobic002G380100--Sobic010G050700 Sobic009G096100 Sobic009G096100 Sobic002G380100--Sobic009G096100 Sobic001G429600--Sobic003G199300 Sobic002G372500 Sobic002G372500 Sobic001G429600--Sobic002G372500 Sobic009G101200 Sobic009G101200 Sobic001G429600--Sobic009G101200 Sobic009G211200 Sobic009G211200 Sobic001G429600--Sobic009G211200 Sobic004G019200 Sobic004G019200 Sobic001G429600--Sobic004G019200 Sobic006G125900 Sobic006G125900 Sobic001G429600--Sobic006G125900 Sobic006G193300 Sobic006G193300 Sobic001G429600--Sobic006G193300 Sobic001G052400 Sobic001G052400 Sobic001G429600--Sobic001G052400 Sobic010G174700 Sobic010G174700 Sobic001G429600--Sobic010G174700 Sobic004G155600 Sobic004G155600 Sobic002G309200--Sobic004G155600 Sobic005G191900 Sobic005G191900 Sobic002G309200--Sobic005G191900 Sobic008G011100 Sobic008G011100 Sobic002G309200--Sobic008G011100 Sobic007G071200 Sobic007G071200 Sobic002G309200--Sobic007G071200 Sobic002G309200--Sobic001G540800 Sobic004G096500 Sobic004G096500 Sobic002G309200--Sobic004G096500 Sobic002G309200--Sobic002G145800 Sobic003G133900 Sobic003G133900 Sobic002G309200--Sobic003G133900 Sobic007G011600 Sobic007G011600 Sobic002G309200--Sobic007G011600 Sobic003G070100--Sobic005G191900 Sobic009G100050 Sobic009G100050 Sobic003G070100--Sobic009G100050 Sobic010G152850 Sobic010G152850 Sobic003G070100--Sobic010G152850 Sobic009G005100 Sobic009G005100 Sobic003G070100--Sobic009G005100 Sobic010G166000 Sobic010G166000 Sobic003G070100--Sobic010G166000 Sobic009G247400 Sobic009G247400 Sobic003G070100--Sobic009G247400 Sobic002G076000 Sobic002G076000 Sobic003G070100--Sobic002G076000 Sobic008G149800 Sobic008G149800 Sobic003G070100--Sobic008G149800 Sobic006G059200 Sobic006G059200 Sobic003G070100--Sobic006G059200 Sobic006G036100 Sobic006G036100 Sobic001G540800--Sobic006G036100 Sobic001G540800--Sobic002G425500 Sobic001G540800--Sobic002G145800 Sobic010G145800 Sobic010G145800 Sobic001G540800--Sobic010G145800 Sobic004G019500 Sobic004G019500 Sobic001G540800--Sobic004G019500 Sobic001G227200 Sobic001G227200 Sobic001G540800--Sobic001G227200 Sobic001G540800--Sobic006G269800 Sobic001G020000 Sobic001G020000 Sobic001G540800--Sobic001G020000 Sobic001G540800--Sobic002G309200
Octagon: transcription factors


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