Gene annotation
Transcriptome id Sobic.001G429600.1
Synonym Sb01g040400
Functional annotation HEAT repeat family protein, putative, expressed
UniProt C5WQ78
Pfam PF03810 PF13646 PF02985
Panther DB PTHR10527 PTHR10527:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008536; Ran GTPase binding GO:0006886intracellular protein transport GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G27640 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os03g15540.1 : HEAT repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a001690 , Zm00025a056630
Brachypodium PNT77703 , KQK22474
Barley HORVU4Hr1G061650.10 , HORVU4Hr1G061650.1 , HORVU4Hr1G061650.9 , HORVU4Hr1G061650.2 , HORVU4Hr1G061650.3 , HORVU4Hr1G061650.6 , HORVU4Hr1G061650.7 , HORVU4Hr1G061650.4 , HORVU4Hr1G061650.5 , HORVU4Hr1G061650.8
Wheat TraesCS4D02G217300 , TraesCS4D02G217300 , TraesCS4B02G217000 , TraesCS4A02G087400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
2 Sobic.002G372500 exportin 1, putative, expressed K14288: exportin-T
3 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
4 Sobic.009G211200 tRNAHis guanylyltransferase family protein, expressed K10761: tRNA(His) guanylyltransferase
5 Sobic.004G019200 DNA-directed RNA polymerase I subunit RPA2, putative, expressed K03002: RPA2, DNA-directed RNA polymerase I subunit RPA2
6 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
7 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
8 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
9 Sobic.010G174700 expressed protein -
10 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
11 Sobic.003G310900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
12 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205
13 Sobic.003G052800 RST1, putative, expressed -
14 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5
15 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
16 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
17 Sobic.004G119400 ATP-binding domain-containing protein, putative, expressed -
18 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
19 Sobic.010G114900 expressed protein -
20 Sobic.002G005000 expressed protein K14557: U3 small nucleolar RNA-associated protein 6


Gene co-expression network
sample Sobic001G429600 Sobic001G429600 Sobic003G199300 Sobic003G199300 Sobic001G429600--Sobic003G199300 Sobic002G372500 Sobic002G372500 Sobic001G429600--Sobic002G372500 Sobic009G101200 Sobic009G101200 Sobic001G429600--Sobic009G101200 Sobic009G211200 Sobic009G211200 Sobic001G429600--Sobic009G211200 Sobic004G019200 Sobic004G019200 Sobic001G429600--Sobic004G019200 Sobic006G125900 Sobic006G125900 Sobic001G429600--Sobic006G125900 Sobic006G193300 Sobic006G193300 Sobic001G429600--Sobic006G193300 Sobic001G052400 Sobic001G052400 Sobic001G429600--Sobic001G052400 Sobic010G174700 Sobic010G174700 Sobic001G429600--Sobic010G174700 Sobic002G071400 Sobic002G071400 Sobic003G199300--Sobic002G071400 Sobic008G049100 Sobic008G049100 Sobic003G199300--Sobic008G049100 Sobic004G085000 Sobic004G085000 Sobic003G199300--Sobic004G085000 Sobic010G205900 Sobic010G205900 Sobic003G199300--Sobic010G205900 Sobic003G199300--Sobic001G429600 Sobic002G378100 Sobic002G378100 Sobic003G199300--Sobic002G378100 Sobic009G246500 Sobic009G246500 Sobic003G199300--Sobic009G246500 Sobic010G224700 Sobic010G224700 Sobic003G199300--Sobic010G224700 Sobic006G185200 Sobic006G185200 Sobic003G199300--Sobic006G185200 Sobic002G372500--Sobic001G429600 Sobic001G461300 Sobic001G461300 Sobic002G372500--Sobic001G461300 Sobic003G052800 Sobic003G052800 Sobic002G372500--Sobic003G052800 Sobic001G373000 Sobic001G373000 Sobic002G372500--Sobic001G373000 Sobic006G269800 Sobic006G269800 Sobic002G372500--Sobic006G269800 Sobic001G451300 Sobic001G451300 Sobic002G372500--Sobic001G451300 Sobic002G372500--Sobic010G174700 Sobic008G147200 Sobic008G147200 Sobic002G372500--Sobic008G147200 Sobic002G372500--Sobic003G199300 Sobic006G086600 Sobic006G086600 Sobic009G101200--Sobic006G086600 Sobic010G003400 Sobic010G003400 Sobic009G101200--Sobic010G003400 Sobic001G145400 Sobic001G145400 Sobic009G101200--Sobic001G145400 Sobic001G259000 Sobic001G259000 Sobic009G101200--Sobic001G259000 Sobic009G101200--Sobic004G085000 Sobic009G101200--Sobic001G052400 Sobic009G101200--Sobic009G246500 Sobic009G101200--Sobic001G429600 Sobic006G049600 Sobic006G049600 Sobic009G101200--Sobic006G049600 Sobic009G211200--Sobic001G429600 Sobic009G211200--Sobic006G125900 Sobic004G224600 Sobic004G224600 Sobic009G211200--Sobic004G224600 Sobic001G401500 Sobic001G401500 Sobic009G211200--Sobic001G401500 Sobic002G105101 Sobic002G105101 Sobic009G211200--Sobic002G105101 Sobic009G211200--Sobic009G101200 Sobic006G002800 Sobic006G002800 Sobic009G211200--Sobic006G002800 Sobic005G108000 Sobic005G108000 Sobic009G211200--Sobic005G108000 Sobic001G393900 Sobic001G393900 Sobic009G211200--Sobic001G393900 Sobic003G308500 Sobic003G308500 Sobic004G019200--Sobic003G308500 Sobic002G317200 Sobic002G317200 Sobic004G019200--Sobic002G317200 Sobic001G089600 Sobic001G089600 Sobic004G019200--Sobic001G089600 Sobic004G019200--Sobic001G145400 Sobic001G020000 Sobic001G020000 Sobic004G019200--Sobic001G020000 Sobic004G019200--Sobic001G429600 Sobic010G115400 Sobic010G115400 Sobic004G019200--Sobic010G115400 Sobic004G019200--Sobic006G086600 Sobic002G399800 Sobic002G399800 Sobic004G019200--Sobic002G399800 Sobic001G453400 Sobic001G453400 Sobic006G125900--Sobic001G453400 Sobic006G125900--Sobic001G145400 Sobic006G125900--Sobic001G052400 Sobic008G051200 Sobic008G051200 Sobic006G125900--Sobic008G051200 Sobic006G125900--Sobic010G174700 Sobic006G125900--Sobic001G429600 Sobic004G340400 Sobic004G340400 Sobic006G125900--Sobic004G340400 Sobic007G217100 Sobic007G217100 Sobic006G125900--Sobic007G217100 Sobic006G125900--Sobic010G003400 Sobic006G193300--Sobic004G340400 Sobic006G193300--Sobic001G429600 Sobic006G193300--Sobic001G461300 Sobic002G408900 Sobic002G408900 Sobic006G193300--Sobic002G408900 Sobic006G193300--Sobic008G049100 Sobic006G193300--Sobic009G246500 Sobic006G193300--Sobic006G125900 Sobic006G193300--Sobic001G401500 Sobic006G193300--Sobic003G199300 Sobic004G320500 Sobic004G320500 Sobic001G052400--Sobic004G320500 Sobic001G052400--Sobic010G003400 Sobic001G052400--Sobic001G453400 Sobic001G052400--Sobic007G217100 Sobic003G042400 Sobic003G042400 Sobic001G052400--Sobic003G042400 Sobic001G052400--Sobic004G340400 Sobic001G052400--Sobic006G086600 Sobic001G052400--Sobic010G174700 Sobic001G052400--Sobic006G125900 Sobic006G036100 Sobic006G036100 Sobic010G174700--Sobic006G036100 Sobic001G352900 Sobic001G352900 Sobic010G174700--Sobic001G352900 Sobic010G174700--Sobic001G089600 Sobic010G174700--Sobic001G052400 Sobic002G145800 Sobic002G145800 Sobic010G174700--Sobic002G145800 Sobic010G174700--Sobic001G451300 Sobic010G053600 Sobic010G053600 Sobic010G174700--Sobic010G053600 Sobic010G174700--Sobic001G453400 Sobic005G220000 Sobic005G220000 Sobic010G174700--Sobic005G220000
Octagon: transcription factors


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