Gene annotation
Transcriptome id Sobic.001G052400.2,Sobic.001G052400.3
Synonym Sb01g004800
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5WX23
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF411
NCBI CDD KOG0127; Nucleolar protein fibrillarin NOP77 (RRM superfamily)
KEGG Orthology K14573; NOP4, nucleolar protein 4
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G21440 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os03g58720.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a016545
Brachypodium KQK12645 , KQK12646 , KQK12647 , KQK12648
Barley HORVU5Hr1G107260.39 , HORVU5Hr1G107260.38 , HORVU5Hr1G107260.33 , HORVU5Hr1G107260.31 , HORVU5Hr1G107260.30 , HORVU5Hr1G107260.37 , HORVU5Hr1G107260.34 , HORVU5Hr1G107260.9 , HORVU5Hr1G107260.3 , HORVU5Hr1G107260.28 , HORVU5Hr1G107260.20 , HORVU5Hr1G107260.21 , HORVU5Hr1G107260.22 , HORVU5Hr1G107260.23 , HORVU5Hr1G107260.24 , HORVU5Hr1G107260.25 , HORVU5Hr1G107260.27 , HORVU5Hr1G107260.19 , HORVU5Hr1G107260.18 , HORVU5Hr1G107260.15 , HORVU5Hr1G107260.14 , HORVU5Hr1G107260.13 , HORVU5Hr1G107260.12 , HORVU5Hr1G107260.42 , HORVU5Hr1G107260.40 , HORVU5Hr1G107260.41 , HORVU5Hr1G107260.8 , HORVU5Hr1G107260.1 , HORVU5Hr1G107260.2 , HORVU5Hr1G107260.5 , HORVU5Hr1G107260.4 , HORVU5Hr1G107260.7 , HORVU5Hr1G107260.6 , HORVU5Hr1G107260.17 , HORVU5Hr1G107260.16 , HORVU5Hr1G107260.11 , HORVU5Hr1G107260.10
Wheat TraesCS5A02G448600 , TraesCS5A02G448600 , TraesCS5A02G448600 , TraesCS5A02G448600 , TraesCS5B02G453200 , TraesCS5B02G453200 , TraesCS5B02G453200 , TraesCS5D02G455200 , TraesCS5D02G455200 , TraesCS5D02G455200 , TraesCS5D02G455200
Populus -


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cDNA sequences
Sobic.001G052400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
2 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
3 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
4 Sobic.007G217100 sas10/Utp3 family protein, expressed K14767: UTP3, U3 small nucleolar RNA-associated protein 3
5 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
6 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
7 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
8 Sobic.010G174700 expressed protein -
9 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
10 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
11 Sobic.007G168300 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed -
12 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205
13 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
14 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
15 Sobic.004G030800 expressed protein -
16 Sobic.004G332400 neurochondrin family protein, putative, expressed -
17 Sobic.010G186600 expressed protein -
18 Sobic.008G147200 tubulin, putative, expressed -
19 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
20 Sobic.001G376900 utp14 protein, putative, expressed K14567: U3 small nucleolar RNA-associated protein 14


Gene co-expression network
sample Sobic001G052400 Sobic001G052400 Sobic004G320500 Sobic004G320500 Sobic001G052400--Sobic004G320500 Sobic010G003400 Sobic010G003400 Sobic001G052400--Sobic010G003400 Sobic001G453400 Sobic001G453400 Sobic001G052400--Sobic001G453400 Sobic007G217100 Sobic007G217100 Sobic001G052400--Sobic007G217100 Sobic003G042400 Sobic003G042400 Sobic001G052400--Sobic003G042400 Sobic004G340400 Sobic004G340400 Sobic001G052400--Sobic004G340400 Sobic006G086600 Sobic006G086600 Sobic001G052400--Sobic006G086600 Sobic010G174700 Sobic010G174700 Sobic001G052400--Sobic010G174700 Sobic006G125900 Sobic006G125900 Sobic001G052400--Sobic006G125900 Sobic004G320500--Sobic001G052400 Sobic004G320500--Sobic006G086600 Sobic004G320500--Sobic004G340400 Sobic002G256700 Sobic002G256700 Sobic004G320500--Sobic002G256700 Sobic001G493700 Sobic001G493700 Sobic004G320500--Sobic001G493700 Sobic001G089600 Sobic001G089600 Sobic004G320500--Sobic001G089600 Sobic010G102600 Sobic010G102600 Sobic004G320500--Sobic010G102600 Sobic004G320500--Sobic010G003400 Sobic009G255600 Sobic009G255600 Sobic004G320500--Sobic009G255600 Sobic010G003400--Sobic006G086600 Sobic010G003400--Sobic001G453400 Sobic010G003400--Sobic001G052400 Sobic009G101200 Sobic009G101200 Sobic010G003400--Sobic009G101200 Sobic003G260400 Sobic003G260400 Sobic010G003400--Sobic003G260400 Sobic001G004400 Sobic001G004400 Sobic010G003400--Sobic001G004400 Sobic010G003400--Sobic004G320500 Sobic010G003400--Sobic001G089600 Sobic004G030800 Sobic004G030800 Sobic010G003400--Sobic004G030800 Sobic001G453400--Sobic010G003400 Sobic001G453400--Sobic006G086600 Sobic001G376900 Sobic001G376900 Sobic001G453400--Sobic001G376900 Sobic003G156500 Sobic003G156500 Sobic001G453400--Sobic003G156500 Sobic001G453400--Sobic001G052400 Sobic001G453400--Sobic001G089600 Sobic001G453400--Sobic006G125900 Sobic007G106700 Sobic007G106700 Sobic001G453400--Sobic007G106700 Sobic010G114900 Sobic010G114900 Sobic001G453400--Sobic010G114900 Sobic007G217100--Sobic001G052400 Sobic002G105101 Sobic002G105101 Sobic007G217100--Sobic002G105101 Sobic007G217100--Sobic006G125900 Sobic007G217100--Sobic003G042400 Sobic004G321700 Sobic004G321700 Sobic007G217100--Sobic004G321700 Sobic007G217100--Sobic001G453400 Sobic007G217100--Sobic009G101200 Sobic004G224600 Sobic004G224600 Sobic007G217100--Sobic004G224600 Sobic008G163500 Sobic008G163500 Sobic007G217100--Sobic008G163500 Sobic007G168300 Sobic007G168300 Sobic003G042400--Sobic007G168300 Sobic003G042400--Sobic001G376900 Sobic001G346900 Sobic001G346900 Sobic003G042400--Sobic001G346900 Sobic009G158100 Sobic009G158100 Sobic003G042400--Sobic009G158100 Sobic001G145400 Sobic001G145400 Sobic003G042400--Sobic001G145400 Sobic003G042400--Sobic001G052400 Sobic008G147200 Sobic008G147200 Sobic003G042400--Sobic008G147200 Sobic003G042400--Sobic009G255600 Sobic007G126500 Sobic007G126500 Sobic003G042400--Sobic007G126500 Sobic004G340400--Sobic001G145400 Sobic001G291800 Sobic001G291800 Sobic004G340400--Sobic001G291800 Sobic004G340400--Sobic004G320500 Sobic010G007100 Sobic010G007100 Sobic004G340400--Sobic010G007100 Sobic008G160000 Sobic008G160000 Sobic004G340400--Sobic008G160000 Sobic004G340400--Sobic001G052400 Sobic001G455800 Sobic001G455800 Sobic004G340400--Sobic001G455800 Sobic004G145000 Sobic004G145000 Sobic004G340400--Sobic004G145000 Sobic001G401500 Sobic001G401500 Sobic004G340400--Sobic001G401500 Sobic006G086600--Sobic010G003400 Sobic006G086600--Sobic001G145400 Sobic006G086600--Sobic001G089600 Sobic006G086600--Sobic009G101200 Sobic006G086600--Sobic001G453400 Sobic006G086600--Sobic004G320500 Sobic002G235200 Sobic002G235200 Sobic006G086600--Sobic002G235200 Sobic007G220300 Sobic007G220300 Sobic006G086600--Sobic007G220300 Sobic006G086600--Sobic010G007100 Sobic006G036100 Sobic006G036100 Sobic010G174700--Sobic006G036100 Sobic001G352900 Sobic001G352900 Sobic010G174700--Sobic001G352900 Sobic010G174700--Sobic001G089600 Sobic010G174700--Sobic001G052400 Sobic002G145800 Sobic002G145800 Sobic010G174700--Sobic002G145800 Sobic001G451300 Sobic001G451300 Sobic010G174700--Sobic001G451300 Sobic010G053600 Sobic010G053600 Sobic010G174700--Sobic010G053600 Sobic010G174700--Sobic001G453400 Sobic005G220000 Sobic005G220000 Sobic010G174700--Sobic005G220000 Sobic006G125900--Sobic001G453400 Sobic006G125900--Sobic001G145400 Sobic006G125900--Sobic001G052400 Sobic008G051200 Sobic008G051200 Sobic006G125900--Sobic008G051200 Sobic006G125900--Sobic010G174700 Sobic001G429600 Sobic001G429600 Sobic006G125900--Sobic001G429600 Sobic006G125900--Sobic004G340400 Sobic006G125900--Sobic007G217100 Sobic006G125900--Sobic010G003400
Octagon: transcription factors


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