Gene annotation
Transcriptome id Sobic.004G332400.1,Sobic.004G332400.2
Synonym Sb04g036110
Functional annotation neurochondrin family protein, putative, expressed
UniProt C5XV16
Pfam PF05536
Panther DB PTHR13109
NCBI CDD KOG2611; Neurochondrin/leucine-rich protein (Neurochondrin)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G32050 : neurochondrin family protein
RAP-DB (Rice) LOC_Os02g55530.1 : neurochondrin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a022490
Brachypodium KQK01178
Barley HORVU6Hr1G086480.18 , HORVU6Hr1G086480.19 , HORVU6Hr1G086480.10 , HORVU6Hr1G086480.11 , HORVU6Hr1G086480.12 , HORVU6Hr1G086480.13 , HORVU6Hr1G086480.14 , HORVU6Hr1G086480.15 , HORVU6Hr1G086480.16 , HORVU6Hr1G086480.17 , HORVU6Hr1G086480.8 , HORVU6Hr1G086480.9 , HORVU6Hr1G086480.2 , HORVU6Hr1G086480.3 , HORVU6Hr1G086480.1 , HORVU6Hr1G086480.6 , HORVU6Hr1G086480.7 , HORVU6Hr1G086480.4 , HORVU6Hr1G086480.5 , HORVU6Hr1G086480.25 , HORVU6Hr1G086480.24 , HORVU6Hr1G086480.27 , HORVU6Hr1G086480.26 , HORVU6Hr1G086480.21 , HORVU6Hr1G086480.20 , HORVU6Hr1G086480.23 , HORVU6Hr1G086480.22 , HORVU6Hr1G024980.2 , HORVU6Hr1G024980.1
Wheat TraesCS6D02G345800 , TraesCS6D02G345800 , TraesCS6A02G362500 , TraesCS6B02G396100
Populus -


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cDNA sequences
Sobic.004G332400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G040800 expressed protein -
2 Sobic.008G002500 RCD1, putative, expressed -
3 Sobic.004G321700 mitochondrial transcription termination factor family protein, putative, expressed K15032: mTERF domain-containing protein, mitochondrial
4 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
5 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
6 Sobic.002G425500 ATPOT1, putative, expressed -
7 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
8 Sobic.008G147200 tubulin, putative, expressed -
9 Sobic.004G040200 CGMC_MAPKCMGC_2_SLT2y_ERK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
10 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
11 Sobic.001G522600 PHD-finger domain containing protein, putative, expressed -
12 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
13 Sobic.001G063700 expressed protein -
14 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
15 Sobic.007G220300 WD domain, G-beta repeat domain containing protein, expressed K11374: elongator complex protein 2
16 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
17 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
18 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
19 Sobic.008G164600 expressed protein -
20 Sobic.006G080400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11851: ubiquitin carboxyl-terminal hydrolase 30


Gene co-expression network
sample Sobic004G332400 Sobic004G332400 Sobic006G040800 Sobic006G040800 Sobic004G332400--Sobic006G040800 Sobic008G002500 Sobic008G002500 Sobic004G332400--Sobic008G002500 Sobic004G321700 Sobic004G321700 Sobic004G332400--Sobic004G321700 Sobic009G143800 Sobic009G143800 Sobic004G332400--Sobic009G143800 Sobic003G188400 Sobic003G188400 Sobic004G332400--Sobic003G188400 Sobic002G425500 Sobic002G425500 Sobic004G332400--Sobic002G425500 Sobic001G346900 Sobic001G346900 Sobic004G332400--Sobic001G346900 Sobic008G147200 Sobic008G147200 Sobic004G332400--Sobic008G147200 Sobic004G040200 Sobic004G040200 Sobic004G332400--Sobic004G040200 Sobic006G040800--Sobic008G002500 Sobic001G063700 Sobic001G063700 Sobic006G040800--Sobic001G063700 Sobic006G040800--Sobic004G332400 Sobic009G088000 Sobic009G088000 Sobic006G040800--Sobic009G088000 Sobic003G360400 Sobic003G360400 Sobic006G040800--Sobic003G360400 Sobic008G164600 Sobic008G164600 Sobic006G040800--Sobic008G164600 Sobic001G354600 Sobic001G354600 Sobic006G040800--Sobic001G354600 Sobic001G433800 Sobic001G433800 Sobic006G040800--Sobic001G433800 Sobic007G225100 Sobic007G225100 Sobic006G040800--Sobic007G225100 Sobic008G002500--Sobic006G040800 Sobic008G002500--Sobic001G063700 Sobic008G002500--Sobic001G354600 Sobic008G002500--Sobic003G360400 Sobic008G002500--Sobic009G088000 Sobic008G002500--Sobic003G188400 Sobic001G522600 Sobic001G522600 Sobic008G002500--Sobic001G522600 Sobic008G002500--Sobic001G433800 Sobic008G002500--Sobic004G332400 Sobic004G321700--Sobic008G147200 Sobic001G393900 Sobic001G393900 Sobic004G321700--Sobic001G393900 Sobic004G321700--Sobic004G332400 Sobic004G321700--Sobic001G346900 Sobic006G002800 Sobic006G002800 Sobic004G321700--Sobic006G002800 Sobic004G309900 Sobic004G309900 Sobic004G321700--Sobic004G309900 Sobic001G003500 Sobic001G003500 Sobic004G321700--Sobic001G003500 Sobic003G362900 Sobic003G362900 Sobic004G321700--Sobic003G362900 Sobic002G052700 Sobic002G052700 Sobic004G321700--Sobic002G052700 Sobic004G353000 Sobic004G353000 Sobic009G143800--Sobic004G353000 Sobic001G259000 Sobic001G259000 Sobic009G143800--Sobic001G259000 Sobic009G143800--Sobic004G332400 Sobic008G014500 Sobic008G014500 Sobic009G143800--Sobic008G014500 Sobic010G118000 Sobic010G118000 Sobic009G143800--Sobic010G118000 Sobic006G200700 Sobic006G200700 Sobic009G143800--Sobic006G200700 Sobic009G143800--Sobic008G147200 Sobic008G131000 Sobic008G131000 Sobic009G143800--Sobic008G131000 Sobic001G291800 Sobic001G291800 Sobic009G143800--Sobic001G291800 Sobic003G188400--Sobic001G433800 Sobic003G188400--Sobic001G063700 Sobic003G188400--Sobic003G360400 Sobic002G133300 Sobic002G133300 Sobic003G188400--Sobic002G133300 Sobic003G095900 Sobic003G095900 Sobic003G188400--Sobic003G095900 Sobic002G317200 Sobic002G317200 Sobic003G188400--Sobic002G317200 Sobic007G159900 Sobic007G159900 Sobic003G188400--Sobic007G159900 Sobic010G112100 Sobic010G112100 Sobic003G188400--Sobic010G112100 Sobic001G311500 Sobic001G311500 Sobic003G188400--Sobic001G311500 Sobic001G020000 Sobic001G020000 Sobic002G425500--Sobic001G020000 Sobic001G155400 Sobic001G155400 Sobic002G425500--Sobic001G155400 Sobic002G425500--Sobic003G188400 Sobic004G107200 Sobic004G107200 Sobic002G425500--Sobic004G107200 Sobic007G183900 Sobic007G183900 Sobic002G425500--Sobic007G183900 Sobic004G185800 Sobic004G185800 Sobic002G425500--Sobic004G185800 Sobic001G227200 Sobic001G227200 Sobic002G425500--Sobic001G227200 Sobic002G425500--Sobic008G002500 Sobic004G155600 Sobic004G155600 Sobic002G425500--Sobic004G155600 Sobic004G086200 Sobic004G086200 Sobic001G346900--Sobic004G086200 Sobic003G409200 Sobic003G409200 Sobic001G346900--Sobic003G409200 Sobic001G134300 Sobic001G134300 Sobic001G346900--Sobic001G134300 Sobic003G042400 Sobic003G042400 Sobic001G346900--Sobic003G042400 Sobic001G346900--Sobic008G147200 Sobic004G285000 Sobic004G285000 Sobic001G346900--Sobic004G285000 Sobic003G416700 Sobic003G416700 Sobic001G346900--Sobic003G416700 Sobic010G096000 Sobic010G096000 Sobic001G346900--Sobic010G096000 Sobic002G422100 Sobic002G422100 Sobic001G346900--Sobic002G422100 Sobic008G147200--Sobic004G321700 Sobic005G137700 Sobic005G137700 Sobic008G147200--Sobic005G137700 Sobic006G269800 Sobic006G269800 Sobic008G147200--Sobic006G269800 Sobic010G186600 Sobic010G186600 Sobic008G147200--Sobic010G186600 Sobic002G145800 Sobic002G145800 Sobic008G147200--Sobic002G145800 Sobic010G007100 Sobic010G007100 Sobic008G147200--Sobic010G007100 Sobic008G147200--Sobic001G346900 Sobic008G147200--Sobic003G042400 Sobic008G147200--Sobic001G291800 Sobic004G040200--Sobic004G332400 Sobic004G040200--Sobic006G040800 Sobic002G048700 Sobic002G048700 Sobic004G040200--Sobic002G048700 Sobic004G040200--Sobic008G002500 Sobic009G255600 Sobic009G255600 Sobic004G040200--Sobic009G255600 Sobic002G361400 Sobic002G361400 Sobic004G040200--Sobic002G361400 Sobic004G040200--Sobic007G225100 Sobic001G051700 Sobic001G051700 Sobic004G040200--Sobic001G051700 Sobic004G123400 Sobic004G123400 Sobic004G040200--Sobic004G123400
Octagon: transcription factors


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