Gene annotation
Transcriptome id Sobic.004G321700.2
Synonym Sb04g035210
Functional annotation mitochondrial transcription termination factor family protein, putative, expressed
UniProt C5XTQ2
Pfam PF02536
Panther DB PTHR13068 PTHR13068:SF8
NCBI CDD KOG1267; Mitochondrial transcription termination factor, mTERF
KEGG Orthology K15032; mTERF domain-containing protein, mitochondrial
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005739mitochondrion GO:0003690double-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT2G44020 : Mitochondrial transcription termination factor family protein
RAP-DB (Rice) LOC_Os02g54200.1 : mitochondrial transcription termination factor family protein, putative, expressed
MaizeGDB (Corn) Zm00025a033000
Brachypodium KQK02067 , KQK02066 , PNT69696
Barley HORVU6Hr1G082970.2 , HORVU6Hr1G082970.3 , HORVU6Hr1G082970.1 , HORVU6Hr1G082970.6 , HORVU6Hr1G082970.7 , HORVU6Hr1G082970.4 , HORVU6Hr1G082970.5 , HORVU6Hr1G082970.8
Wheat TraesCS6B02G376100 , TraesCS6B02G376100 , TraesCS6D02G325000 , TraesCS6A02G343900
Populus -


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cDNA sequences
Sobic.004G321700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G147200 tubulin, putative, expressed -
2 Sobic.001G393900 FAD binding domain containing protein, expressed -
3 Sobic.004G332400 neurochondrin family protein, putative, expressed -
4 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
5 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
6 Sobic.004G309900 cold-induced protein, putative, expressed K13174: THO complex subunit 5
7 Sobic.001G003500 la domain containing protein, putative, expressed K18757: la-related protein 1
8 Sobic.003G362900 Transcription initiation factor TFIID subunit A containing protein, expressed K03126: transcription initiation factor TFIID subunit 12
9 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
10 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
11 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
12 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
13 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
14 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
15 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
16 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
17 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
18 Sobic.010G186600 expressed protein -
19 Sobic.001G155400 initiation factor 2 subunit family domain containing protein, expressed K03680: translation initiation factor eIF-2B subunit delta
20 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)


Gene co-expression network
sample Sobic004G321700 Sobic004G321700 Sobic008G147200 Sobic008G147200 Sobic004G321700--Sobic008G147200 Sobic001G393900 Sobic001G393900 Sobic004G321700--Sobic001G393900 Sobic004G332400 Sobic004G332400 Sobic004G321700--Sobic004G332400 Sobic001G346900 Sobic001G346900 Sobic004G321700--Sobic001G346900 Sobic006G002800 Sobic006G002800 Sobic004G321700--Sobic006G002800 Sobic004G309900 Sobic004G309900 Sobic004G321700--Sobic004G309900 Sobic001G003500 Sobic001G003500 Sobic004G321700--Sobic001G003500 Sobic003G362900 Sobic003G362900 Sobic004G321700--Sobic003G362900 Sobic002G052700 Sobic002G052700 Sobic004G321700--Sobic002G052700 Sobic008G147200--Sobic004G321700 Sobic005G137700 Sobic005G137700 Sobic008G147200--Sobic005G137700 Sobic006G269800 Sobic006G269800 Sobic008G147200--Sobic006G269800 Sobic010G186600 Sobic010G186600 Sobic008G147200--Sobic010G186600 Sobic002G145800 Sobic002G145800 Sobic008G147200--Sobic002G145800 Sobic010G007100 Sobic010G007100 Sobic008G147200--Sobic010G007100 Sobic008G147200--Sobic001G346900 Sobic003G042400 Sobic003G042400 Sobic008G147200--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic008G147200--Sobic001G291800 Sobic001G393900--Sobic004G321700 Sobic006G267600 Sobic006G267600 Sobic001G393900--Sobic006G267600 Sobic001G089600 Sobic001G089600 Sobic001G393900--Sobic001G089600 Sobic002G399800 Sobic002G399800 Sobic001G393900--Sobic002G399800 Sobic004G096400 Sobic004G096400 Sobic001G393900--Sobic004G096400 Sobic007G173500 Sobic007G173500 Sobic001G393900--Sobic007G173500 Sobic001G393900--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic001G393900--Sobic003G309050 Sobic001G393900--Sobic003G042400 Sobic006G040800 Sobic006G040800 Sobic004G332400--Sobic006G040800 Sobic008G002500 Sobic008G002500 Sobic004G332400--Sobic008G002500 Sobic004G332400--Sobic004G321700 Sobic009G143800 Sobic009G143800 Sobic004G332400--Sobic009G143800 Sobic003G188400 Sobic003G188400 Sobic004G332400--Sobic003G188400 Sobic002G425500 Sobic002G425500 Sobic004G332400--Sobic002G425500 Sobic004G332400--Sobic001G346900 Sobic004G332400--Sobic008G147200 Sobic004G040200 Sobic004G040200 Sobic004G332400--Sobic004G040200 Sobic004G086200 Sobic004G086200 Sobic001G346900--Sobic004G086200 Sobic003G409200 Sobic003G409200 Sobic001G346900--Sobic003G409200 Sobic001G134300 Sobic001G134300 Sobic001G346900--Sobic001G134300 Sobic001G346900--Sobic003G042400 Sobic001G346900--Sobic008G147200 Sobic004G285000 Sobic004G285000 Sobic001G346900--Sobic004G285000 Sobic003G416700 Sobic003G416700 Sobic001G346900--Sobic003G416700 Sobic010G096000 Sobic010G096000 Sobic001G346900--Sobic010G096000 Sobic002G422100 Sobic002G422100 Sobic001G346900--Sobic002G422100 Sobic003G308500 Sobic003G308500 Sobic006G002800--Sobic003G308500 Sobic004G224600 Sobic004G224600 Sobic006G002800--Sobic004G224600 Sobic002G150700 Sobic002G150700 Sobic006G002800--Sobic002G150700 Sobic001G145400 Sobic001G145400 Sobic006G002800--Sobic001G145400 Sobic003G146600 Sobic003G146600 Sobic006G002800--Sobic003G146600 Sobic006G002800--Sobic010G007100 Sobic006G002800--Sobic004G321700 Sobic009G234700 Sobic009G234700 Sobic006G002800--Sobic009G234700 Sobic006G002800--Sobic008G147200 Sobic003G133900 Sobic003G133900 Sobic004G309900--Sobic003G133900 Sobic007G183900 Sobic007G183900 Sobic004G309900--Sobic007G183900 Sobic003G062300 Sobic003G062300 Sobic004G309900--Sobic003G062300 Sobic006G077200 Sobic006G077200 Sobic004G309900--Sobic006G077200 Sobic004G309900--Sobic004G096400 Sobic002G366400 Sobic002G366400 Sobic004G309900--Sobic002G366400 Sobic006G210000 Sobic006G210000 Sobic004G309900--Sobic006G210000 Sobic004G309900--Sobic003G416700 Sobic001G008200 Sobic001G008200 Sobic004G309900--Sobic001G008200 Sobic001G003500--Sobic004G321700 Sobic001G003500--Sobic008G147200 Sobic001G003500--Sobic002G052700 Sobic001G003500--Sobic001G291800 Sobic005G220000 Sobic005G220000 Sobic001G003500--Sobic005G220000 Sobic001G003500--Sobic010G007100 Sobic004G357400 Sobic004G357400 Sobic001G003500--Sobic004G357400 Sobic004G095300 Sobic004G095300 Sobic001G003500--Sobic004G095300 Sobic006G125900 Sobic006G125900 Sobic001G003500--Sobic006G125900 Sobic003G362900--Sobic004G321700 Sobic003G362900--Sobic001G393900 Sobic003G362900--Sobic002G145800 Sobic003G362900--Sobic002G052700 Sobic003G362900--Sobic008G147200 Sobic003G362900--Sobic004G285000 Sobic003G362900--Sobic006G269800 Sobic003G362900--Sobic004G309900 Sobic007G011600 Sobic007G011600 Sobic003G362900--Sobic007G011600 Sobic001G251100 Sobic001G251100 Sobic002G052700--Sobic001G251100 Sobic002G052700--Sobic004G357400 Sobic002G052700--Sobic003G042400 Sobic002G052700--Sobic004G321700 Sobic002G052700--Sobic001G393900 Sobic002G052700--Sobic001G003500 Sobic001G052400 Sobic001G052400 Sobic002G052700--Sobic001G052400 Sobic003G379200 Sobic003G379200 Sobic002G052700--Sobic003G379200 Sobic002G052700--Sobic008G147200
Octagon: transcription factors


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