Gene annotation
Transcriptome id Sobic.001G155400.1
Synonym Sb01g013530
Functional annotation initiation factor 2 subunit family domain containing protein, expressed
UniProt C5WR65
Pfam PF01008
Panther DB PTHR10233 PTHR10233:SF19
NCBI CDD -
KEGG Orthology K03680; translation initiation factor eIF-2B subunit delta
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G38640 : NagB/RpiA/CoA transferase-like superfamily protein
RAP-DB (Rice) LOC_Os03g44310.1 : initiation factor 2 subunit family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a007267 , Zm00025a017253
Brachypodium KQK13984
Barley HORVU5Hr1G092900.5 , HORVU5Hr1G092900.4 , HORVU5Hr1G092900.6 , HORVU5Hr1G092900.1 , HORVU5Hr1G092900.3 , HORVU5Hr1G092900.2
Wheat TraesCS5A02G374400 , TraesCS5A02G374400 , TraesCS5A02G374400 , TraesCS5D02G384000 , TraesCS5D02G384000 , TraesCS5D02G384000 , TraesCS5B02G376300
Populus -


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cDNA sequences
Sobic.001G155400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G425500 ATPOT1, putative, expressed -
2 Sobic.001G035200 ThiF family domain containing protein, putative, expressed K04532: NAE1, amyloid beta precursor protein binding protein 1
3 Sobic.003G413100 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed -
4 Sobic.010G096000 OsDegp10 - Putative Deg protease homologue, expressed -
5 Sobic.002G063900 zinc ion binding protein, putative, expressed -
6 Sobic.010G145800 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
7 Sobic.010G140400 poor homologous synapsis 1 protein, putative, expressed -
8 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
9 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
10 Sobic.009G192300 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
11 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
12 Sobic.001G405600 basic helix-loop-helix, putative, expressed K10863: aprataxin
13 Sobic.006G234700 FGGY family of carbohydrate kinases, putative, expressed -
14 Sobic.003G416700 homeobox domain containing protein, expressed -
15 Sobic.010G034100 GTP-binding protein GUF1, putative, expressed -
16 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -
17 Sobic.002G260400 - -
18 Sobic.008G147200 tubulin, putative, expressed -
19 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
20 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22


Gene co-expression network
sample Sobic001G155400 Sobic001G155400 Sobic002G425500 Sobic002G425500 Sobic001G155400--Sobic002G425500 Sobic001G035200 Sobic001G035200 Sobic001G155400--Sobic001G035200 Sobic003G413100 Sobic003G413100 Sobic001G155400--Sobic003G413100 Sobic010G096000 Sobic010G096000 Sobic001G155400--Sobic010G096000 Sobic002G063900 Sobic002G063900 Sobic001G155400--Sobic002G063900 Sobic010G145800 Sobic010G145800 Sobic001G155400--Sobic010G145800 Sobic010G140400 Sobic010G140400 Sobic001G155400--Sobic010G140400 Sobic008G173100 Sobic008G173100 Sobic001G155400--Sobic008G173100 Sobic001G020000 Sobic001G020000 Sobic001G155400--Sobic001G020000 Sobic002G425500--Sobic001G020000 Sobic002G425500--Sobic001G155400 Sobic003G188400 Sobic003G188400 Sobic002G425500--Sobic003G188400 Sobic004G107200 Sobic004G107200 Sobic002G425500--Sobic004G107200 Sobic007G183900 Sobic007G183900 Sobic002G425500--Sobic007G183900 Sobic004G185800 Sobic004G185800 Sobic002G425500--Sobic004G185800 Sobic001G227200 Sobic001G227200 Sobic002G425500--Sobic001G227200 Sobic008G002500 Sobic008G002500 Sobic002G425500--Sobic008G002500 Sobic004G155600 Sobic004G155600 Sobic002G425500--Sobic004G155600 Sobic010G059500 Sobic010G059500 Sobic001G035200--Sobic010G059500 Sobic001G145400 Sobic001G145400 Sobic001G035200--Sobic001G145400 Sobic010G185400 Sobic010G185400 Sobic001G035200--Sobic010G185400 Sobic006G077200 Sobic006G077200 Sobic001G035200--Sobic006G077200 Sobic010G034100 Sobic010G034100 Sobic001G035200--Sobic010G034100 Sobic009G084900 Sobic009G084900 Sobic001G035200--Sobic009G084900 Sobic001G035200--Sobic001G155400 Sobic002G371700 Sobic002G371700 Sobic001G035200--Sobic002G371700 Sobic001G087600 Sobic001G087600 Sobic001G035200--Sobic001G087600 Sobic003G413100--Sobic001G155400 Sobic007G016900 Sobic007G016900 Sobic003G413100--Sobic007G016900 Sobic003G413100--Sobic010G096000 Sobic001G373400 Sobic001G373400 Sobic003G413100--Sobic001G373400 Sobic002G292800 Sobic002G292800 Sobic003G413100--Sobic002G292800 Sobic006G245900 Sobic006G245900 Sobic003G413100--Sobic006G245900 Sobic004G345400 Sobic004G345400 Sobic003G413100--Sobic004G345400 Sobic009G040800 Sobic009G040800 Sobic003G413100--Sobic009G040800 Sobic001G042200 Sobic001G042200 Sobic003G413100--Sobic001G042200 Sobic001G246500 Sobic001G246500 Sobic010G096000--Sobic001G246500 Sobic008G100100 Sobic008G100100 Sobic010G096000--Sobic008G100100 Sobic004G086200 Sobic004G086200 Sobic010G096000--Sobic004G086200 Sobic001G306900 Sobic001G306900 Sobic010G096000--Sobic001G306900 Sobic001G346900 Sobic001G346900 Sobic010G096000--Sobic001G346900 Sobic010G096000--Sobic008G173100 Sobic003G416700 Sobic003G416700 Sobic010G096000--Sobic003G416700 Sobic010G096000--Sobic001G155400 Sobic008G147200 Sobic008G147200 Sobic010G096000--Sobic008G147200 Sobic002G063900--Sobic008G173100 Sobic006G116100 Sobic006G116100 Sobic002G063900--Sobic006G116100 Sobic004G357100 Sobic004G357100 Sobic002G063900--Sobic004G357100 Sobic002G260400 Sobic002G260400 Sobic002G063900--Sobic002G260400 Sobic007G090430 Sobic007G090430 Sobic002G063900--Sobic007G090430 Sobic004G246100 Sobic004G246100 Sobic002G063900--Sobic004G246100 Sobic002G278000 Sobic002G278000 Sobic002G063900--Sobic002G278000 Sobic008G149800 Sobic008G149800 Sobic002G063900--Sobic008G149800 SobicK028600 SobicK028600 Sobic002G063900--SobicK028600 Sobic007G203200 Sobic007G203200 Sobic010G145800--Sobic007G203200 Sobic010G145800--Sobic010G140400 Sobic001G002600 Sobic001G002600 Sobic010G145800--Sobic001G002600 Sobic010G145800--Sobic001G227200 Sobic009G260500 Sobic009G260500 Sobic010G145800--Sobic009G260500 Sobic007G011600 Sobic007G011600 Sobic010G145800--Sobic007G011600 Sobic001G083400 Sobic001G083400 Sobic010G145800--Sobic001G083400 Sobic010G237900 Sobic010G237900 Sobic010G145800--Sobic010G237900 Sobic001G219600 Sobic001G219600 Sobic010G145800--Sobic001G219600 Sobic010G140400--Sobic010G145800 Sobic001G493200 Sobic001G493200 Sobic010G140400--Sobic001G493200 Sobic010G140400--Sobic001G219600 Sobic006G234700 Sobic006G234700 Sobic010G140400--Sobic006G234700 Sobic010G140400--Sobic007G203200 Sobic003G443100 Sobic003G443100 Sobic010G140400--Sobic003G443100 Sobic008G162900 Sobic008G162900 Sobic010G140400--Sobic008G162900 Sobic010G279450 Sobic010G279450 Sobic010G140400--Sobic010G279450 Sobic010G140400--Sobic001G227200 Sobic008G173100--Sobic002G260400 Sobic008G173100--Sobic007G090430 Sobic008G173100--Sobic006G116100 Sobic008G173100--Sobic002G063900 Sobic002G264200 Sobic002G264200 Sobic008G173100--Sobic002G264200 Sobic010G236400 Sobic010G236400 Sobic008G173100--Sobic010G236400 Sobic008G153000 Sobic008G153000 Sobic008G173100--Sobic008G153000 Sobic001G311500 Sobic001G311500 Sobic008G173100--Sobic001G311500 Sobic010G245000 Sobic010G245000 Sobic008G173100--Sobic010G245000 Sobic001G020000--Sobic001G219600 Sobic001G433800 Sobic001G433800 Sobic001G020000--Sobic001G433800 Sobic002G317200 Sobic002G317200 Sobic001G020000--Sobic002G317200 Sobic001G354600 Sobic001G354600 Sobic001G020000--Sobic001G354600 Sobic001G020000--Sobic001G087600 Sobic001G020000--Sobic002G425500 Sobic003G095900 Sobic003G095900 Sobic001G020000--Sobic003G095900 Sobic001G352900 Sobic001G352900 Sobic001G020000--Sobic001G352900 Sobic004G124300 Sobic004G124300 Sobic001G020000--Sobic004G124300
Octagon: transcription factors


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