Gene annotation
Transcriptome id Sobic.010G096000.1,Sobic.010G096000.3,Sobic.010G096000.2
Synonym Sb10g008370, DegP9
Functional annotation OsDegp10 - Putative Deg protease homologue, expressed
UniProt A0A194YI76
Pfam PF13180 PF13365
Panther DB PTHR22939 PTHR22939:SF92
NCBI CDD KOG1320; Serine protease
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G40200 : DegP protease 9
RAP-DB (Rice) LOC_Os06g12780.1 : OsDegp10 - Putative Deg protease homologue, expressed
MaizeGDB (Corn) Zm00025a042621 , Zm00025a033216 , Zm00025a031755 , Zm00025a022002
Brachypodium PNT76142 , PNT76141 , KQK18825 , KQK01963 , KQK01962 , KQK01964
Barley HORVU7Hr1G038990.12 , HORVU7Hr1G038990.10 , HORVU7Hr1G038990.11 , HORVU6Hr1G076200.3 , HORVU6Hr1G076200.2 , HORVU6Hr1G076200.1 , HORVU7Hr1G038990.2 , HORVU7Hr1G038990.3 , HORVU7Hr1G038990.9
Wheat TraesCS6D02G288200 , TraesCS7B02G096100 , TraesCS7D02G192300 , TraesCS7A02G191300 , TraesCS6B02G337900 , TraesCS6A02G308900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G246500 GTPase of unknown function domain containing protein, putative, expressed -
2 Sobic.008G100100 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
3 Sobic.004G086200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
4 Sobic.001G306900 tetratricopeptide repeat domain containing protein, expressed K12600: SKI3, superkiller protein 3
5 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
6 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
7 Sobic.003G416700 homeobox domain containing protein, expressed -
8 Sobic.001G155400 initiation factor 2 subunit family domain containing protein, expressed K03680: translation initiation factor eIF-2B subunit delta
9 Sobic.008G147200 tubulin, putative, expressed -
10 Sobic.002G357700 phospholipid-transporting ATPase 2, putative, expressed K01530: phospholipid-translocating ATPase
11 Sobic.007G056700 AP2/EREBP transcription factor BABY BOOM, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
12 Sobic.009G119000 tetratricopeptide repeat containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
13 Sobic.006G116100 RNA recognition motif containing protein, putative, expressed -
14 Sobic.007G090430 - -
15 Sobic.002G063900 zinc ion binding protein, putative, expressed -
16 Sobic.006G165000 RNA recognition motif containing protein, expressed -
17 Sobic.004G156500 expressed protein -
18 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
19 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
20 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1


Gene co-expression network
sample Sobic010G096000 Sobic010G096000 Sobic001G246500 Sobic001G246500 Sobic010G096000--Sobic001G246500 Sobic008G100100 Sobic008G100100 Sobic010G096000--Sobic008G100100 Sobic004G086200 Sobic004G086200 Sobic010G096000--Sobic004G086200 Sobic001G306900 Sobic001G306900 Sobic010G096000--Sobic001G306900 Sobic001G346900 Sobic001G346900 Sobic010G096000--Sobic001G346900 Sobic008G173100 Sobic008G173100 Sobic010G096000--Sobic008G173100 Sobic003G416700 Sobic003G416700 Sobic010G096000--Sobic003G416700 Sobic001G155400 Sobic001G155400 Sobic010G096000--Sobic001G155400 Sobic008G147200 Sobic008G147200 Sobic010G096000--Sobic008G147200 Sobic001G246500--Sobic008G173100 Sobic001G246500--Sobic010G096000 Sobic009G074700 Sobic009G074700 Sobic001G246500--Sobic009G074700 Sobic002G259800 Sobic002G259800 Sobic001G246500--Sobic002G259800 Sobic001G246500--Sobic001G306900 Sobic009G195200 Sobic009G195200 Sobic001G246500--Sobic009G195200 Sobic001G246500--Sobic004G086200 Sobic006G013500 Sobic006G013500 Sobic001G246500--Sobic006G013500 Sobic009G151200 Sobic009G151200 Sobic001G246500--Sobic009G151200 Sobic004G156500 Sobic004G156500 Sobic008G100100--Sobic004G156500 Sobic008G100100--Sobic001G306900 Sobic006G032400 Sobic006G032400 Sobic008G100100--Sobic006G032400 Sobic005G015900 Sobic005G015900 Sobic008G100100--Sobic005G015900 Sobic006G210000 Sobic006G210000 Sobic008G100100--Sobic006G210000 Sobic007G031600 Sobic007G031600 Sobic008G100100--Sobic007G031600 Sobic010G065300 Sobic010G065300 Sobic008G100100--Sobic010G065300 Sobic003G241200 Sobic003G241200 Sobic008G100100--Sobic003G241200 Sobic008G100100--Sobic010G096000 Sobic004G086200--Sobic001G346900 Sobic004G285000 Sobic004G285000 Sobic004G086200--Sobic004G285000 Sobic001G134300 Sobic001G134300 Sobic004G086200--Sobic001G134300 Sobic001G245900 Sobic001G245900 Sobic004G086200--Sobic001G245900 Sobic004G086200--Sobic001G306900 Sobic004G086200--Sobic010G096000 Sobic010G279900 Sobic010G279900 Sobic004G086200--Sobic010G279900 Sobic004G086200--Sobic001G246500 Sobic004G086200--Sobic010G065300 Sobic004G138000 Sobic004G138000 Sobic001G306900--Sobic004G138000 Sobic001G306900--Sobic010G065300 Sobic001G303675 Sobic001G303675 Sobic001G306900--Sobic001G303675 Sobic007G065400 Sobic007G065400 Sobic001G306900--Sobic007G065400 Sobic001G511500 Sobic001G511500 Sobic001G306900--Sobic001G511500 Sobic004G145500 Sobic004G145500 Sobic001G306900--Sobic004G145500 Sobic002G153700 Sobic002G153700 Sobic001G306900--Sobic002G153700 Sobic001G306900--Sobic006G013500 Sobic001G094000 Sobic001G094000 Sobic001G306900--Sobic001G094000 Sobic001G346900--Sobic004G086200 Sobic003G409200 Sobic003G409200 Sobic001G346900--Sobic003G409200 Sobic001G346900--Sobic001G134300 Sobic003G042400 Sobic003G042400 Sobic001G346900--Sobic003G042400 Sobic001G346900--Sobic008G147200 Sobic001G346900--Sobic004G285000 Sobic001G346900--Sobic003G416700 Sobic001G346900--Sobic010G096000 Sobic002G422100 Sobic002G422100 Sobic001G346900--Sobic002G422100 Sobic002G260400 Sobic002G260400 Sobic008G173100--Sobic002G260400 Sobic007G090430 Sobic007G090430 Sobic008G173100--Sobic007G090430 Sobic006G116100 Sobic006G116100 Sobic008G173100--Sobic006G116100 Sobic002G063900 Sobic002G063900 Sobic008G173100--Sobic002G063900 Sobic002G264200 Sobic002G264200 Sobic008G173100--Sobic002G264200 Sobic010G236400 Sobic010G236400 Sobic008G173100--Sobic010G236400 Sobic008G153000 Sobic008G153000 Sobic008G173100--Sobic008G153000 Sobic001G311500 Sobic001G311500 Sobic008G173100--Sobic001G311500 Sobic010G245000 Sobic010G245000 Sobic008G173100--Sobic010G245000 Sobic002G154000 Sobic002G154000 Sobic003G416700--Sobic002G154000 Sobic003G416700--Sobic002G264200 Sobic001G461400 Sobic001G461400 Sobic003G416700--Sobic001G461400 Sobic007G183900 Sobic007G183900 Sobic003G416700--Sobic007G183900 Sobic001G051700 Sobic001G051700 Sobic003G416700--Sobic001G051700 Sobic003G360400 Sobic003G360400 Sobic003G416700--Sobic003G360400 Sobic009G119000 Sobic009G119000 Sobic003G416700--Sobic009G119000 Sobic001G063700 Sobic001G063700 Sobic003G416700--Sobic001G063700 Sobic010G275500 Sobic010G275500 Sobic003G416700--Sobic010G275500 Sobic002G425500 Sobic002G425500 Sobic001G155400--Sobic002G425500 Sobic001G035200 Sobic001G035200 Sobic001G155400--Sobic001G035200 Sobic003G413100 Sobic003G413100 Sobic001G155400--Sobic003G413100 Sobic001G155400--Sobic010G096000 Sobic001G155400--Sobic002G063900 Sobic010G145800 Sobic010G145800 Sobic001G155400--Sobic010G145800 Sobic010G140400 Sobic010G140400 Sobic001G155400--Sobic010G140400 Sobic001G155400--Sobic008G173100 Sobic001G020000 Sobic001G020000 Sobic001G155400--Sobic001G020000 Sobic004G321700 Sobic004G321700 Sobic008G147200--Sobic004G321700 Sobic005G137700 Sobic005G137700 Sobic008G147200--Sobic005G137700 Sobic006G269800 Sobic006G269800 Sobic008G147200--Sobic006G269800 Sobic010G186600 Sobic010G186600 Sobic008G147200--Sobic010G186600 Sobic002G145800 Sobic002G145800 Sobic008G147200--Sobic002G145800 Sobic010G007100 Sobic010G007100 Sobic008G147200--Sobic010G007100 Sobic008G147200--Sobic001G346900 Sobic008G147200--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic008G147200--Sobic001G291800
Octagon: transcription factors


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