Gene annotation
Transcriptome id Sobic.009G260500.2,Sobic.009G260500.1
Synonym Sb09g030940, ATCSTF77, CSTF77
Functional annotation tetratricopeptide repeat containing protein, putative, expressed
UniProt A0A1B6PAJ5 , A0A1B6PAU9
Pfam PF05843
Panther DB PTHR19980
NCBI CDD KOG1914; mRNA cleavage and polyadenylation factor I complex, subunit RNA14
KEGG Orthology K14408; CSTF3, cleavage stimulation factor subunit 3
Gene Ontology GO:0006397; mRNA processing GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G17760 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os12g38380.1 : tetratricopeptide repeat containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a043547
Brachypodium KQJ86206 , KQJ86204 , KQJ86205
Barley HORVU3Hr1G013370.13 , HORVU3Hr1G013370.12 , HORVU3Hr1G013370.11 , HORVU3Hr1G013370.10 , HORVU3Hr1G013370.17 , HORVU3Hr1G013370.16 , HORVU3Hr1G013370.15 , HORVU3Hr1G013370.14 , HORVU3Hr1G013370.19 , HORVU3Hr1G013370.18 , HORVU3Hr1G013370.3 , HORVU3Hr1G013370.2 , HORVU3Hr1G013370.1 , HORVU3Hr1G013370.7 , HORVU3Hr1G013370.6 , HORVU3Hr1G013370.5 , HORVU3Hr1G013370.4 , HORVU3Hr1G013370.9 , HORVU3Hr1G013370.8 , HORVU3Hr1G013370.22 , HORVU3Hr1G013370.23 , HORVU3Hr1G013370.20 , HORVU3Hr1G013370.21 , HORVU3Hr1G013370.26 , HORVU3Hr1G013370.27 , HORVU3Hr1G013370.24 , HORVU3Hr1G013370.25
Wheat TraesCS3D02G073700 , TraesCS3B02G088300 , TraesCS3B02G088300 , TraesCS3B02G088300 , TraesCS3A02G074000
Populus -


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cDNA sequences
Sobic.009G260500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
2 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
3 Sobic.010G277500 expressed protein -
4 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
5 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
6 Sobic.008G028700 SET domain containing protein, expressed -
7 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
8 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
9 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
10 Sobic.009G247400 PX domain containing protein, putative, expressed K17925: sorting nexin-13
11 Sobic.003G101500 dnaJ domain containing protein, expressed -
12 Sobic.004G314000 expressed protein -
13 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
14 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
15 Sobic.006G216800 AAA family ATPase, putative, expressed K13339: PEX6, peroxin-6
16 Sobic.010G279450 - K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
17 Sobic.007G090430 - -
18 Sobic.007G117400 expressed protein -
19 Sobic.001G363500 DIRP family protein, putative, expressed -
20 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR


Gene co-expression network
sample Sobic009G260500 Sobic009G260500 Sobic001G219600 Sobic001G219600 Sobic009G260500--Sobic001G219600 Sobic004G009600 Sobic004G009600 Sobic009G260500--Sobic004G009600 Sobic010G277500 Sobic010G277500 Sobic009G260500--Sobic010G277500 Sobic008G009700 Sobic008G009700 Sobic009G260500--Sobic008G009700 Sobic010G139000 Sobic010G139000 Sobic009G260500--Sobic010G139000 Sobic008G028700 Sobic008G028700 Sobic009G260500--Sobic008G028700 Sobic009G040600 Sobic009G040600 Sobic009G260500--Sobic009G040600 Sobic002G309600 Sobic002G309600 Sobic009G260500--Sobic002G309600 Sobic001G311500 Sobic001G311500 Sobic009G260500--Sobic001G311500 Sobic001G219600--Sobic009G260500 Sobic001G219600--Sobic002G309600 Sobic002G317200 Sobic002G317200 Sobic001G219600--Sobic002G317200 Sobic009G047200 Sobic009G047200 Sobic001G219600--Sobic009G047200 Sobic003G141500 Sobic003G141500 Sobic001G219600--Sobic003G141500 Sobic001G219600--Sobic010G139000 Sobic001G071400 Sobic001G071400 Sobic001G219600--Sobic001G071400 Sobic002G397500 Sobic002G397500 Sobic001G219600--Sobic002G397500 Sobic001G020000 Sobic001G020000 Sobic001G219600--Sobic001G020000 Sobic004G009600--Sobic009G040600 Sobic004G009600--Sobic008G028700 Sobic004G009600--Sobic009G260500 Sobic010G279450 Sobic010G279450 Sobic004G009600--Sobic010G279450 Sobic004G009600--Sobic002G309600 Sobic007G117400 Sobic007G117400 Sobic004G009600--Sobic007G117400 Sobic003G293200 Sobic003G293200 Sobic004G009600--Sobic003G293200 Sobic001G363500 Sobic001G363500 Sobic004G009600--Sobic001G363500 Sobic004G009600--Sobic010G277500 Sobic004G208900 Sobic004G208900 Sobic010G277500--Sobic004G208900 Sobic006G209850 Sobic006G209850 Sobic010G277500--Sobic006G209850 Sobic007G065400 Sobic007G065400 Sobic010G277500--Sobic007G065400 Sobic010G277500--Sobic009G260500 Sobic003G280800 Sobic003G280800 Sobic010G277500--Sobic003G280800 Sobic010G277500--Sobic004G009600 Sobic010G277500--Sobic008G028700 Sobic004G258700 Sobic004G258700 Sobic010G277500--Sobic004G258700 Sobic006G216800 Sobic006G216800 Sobic010G277500--Sobic006G216800 Sobic008G009700--Sobic002G309600 Sobic005G008800 Sobic005G008800 Sobic008G009700--Sobic005G008800 Sobic005G112300 Sobic005G112300 Sobic008G009700--Sobic005G112300 Sobic008G009700--Sobic007G065400 Sobic002G071500 Sobic002G071500 Sobic008G009700--Sobic002G071500 Sobic010G002100 Sobic010G002100 Sobic008G009700--Sobic010G002100 Sobic002G153700 Sobic002G153700 Sobic008G009700--Sobic002G153700 Sobic010G065300 Sobic010G065300 Sobic008G009700--Sobic010G065300 Sobic001G241200 Sobic001G241200 Sobic008G009700--Sobic001G241200 Sobic004G314000 Sobic004G314000 Sobic010G139000--Sobic004G314000 Sobic010G139000--Sobic005G112300 Sobic010G139000--Sobic010G279450 Sobic010G206900 Sobic010G206900 Sobic010G139000--Sobic010G206900 Sobic010G139000--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic010G139000--Sobic001G036050 Sobic010G112100 Sobic010G112100 Sobic010G139000--Sobic010G112100 Sobic010G010700 Sobic010G010700 Sobic010G139000--Sobic010G010700 Sobic010G139000--Sobic005G008800 Sobic008G028700--Sobic010G279450 Sobic008G028700--Sobic009G040600 Sobic008G028700--Sobic004G009600 Sobic008G028700--Sobic004G258700 Sobic008G028700--Sobic007G065400 Sobic008G028700--Sobic010G139000 Sobic002G006900 Sobic002G006900 Sobic008G028700--Sobic002G006900 Sobic002G145101 Sobic002G145101 Sobic008G028700--Sobic002G145101 Sobic008G113100 Sobic008G113100 Sobic008G028700--Sobic008G113100 Sobic009G040600--Sobic004G009600 Sobic009G040600--Sobic002G006900 Sobic008G047800 Sobic008G047800 Sobic009G040600--Sobic008G047800 Sobic009G040600--Sobic004G208900 Sobic009G040600--Sobic005G112300 Sobic009G040600--Sobic007G065400 Sobic009G040600--Sobic008G028700 Sobic009G040600--Sobic002G309600 Sobic009G126400 Sobic009G126400 Sobic009G040600--Sobic009G126400 Sobic002G309600--Sobic003G280800 Sobic002G134200 Sobic002G134200 Sobic002G309600--Sobic002G134200 Sobic002G309600--Sobic007G117400 Sobic002G309600--Sobic008G009700 Sobic002G309600--Sobic001G071400 Sobic002G309600--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic002G309600--Sobic004G065100 Sobic001G154900 Sobic001G154900 Sobic002G309600--Sobic001G154900 Sobic002G309600--Sobic002G006900 Sobic001G311500--Sobic010G139000 Sobic009G247400 Sobic009G247400 Sobic001G311500--Sobic009G247400 Sobic001G311500--Sobic005G112300 Sobic003G059750 Sobic003G059750 Sobic001G311500--Sobic003G059750 Sobic001G311500--Sobic008G009700 Sobic001G311500--Sobic004G314000 Sobic001G311500--Sobic010G279450 Sobic001G311500--Sobic008G028700 Sobic001G311500--Sobic001G363500
Octagon: transcription factors


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