Gene annotation
Transcriptome id Sobic.002G317200.2,Sobic.002G317200.1,Sobic.002G317200.3
Synonym Sb02g034630
Functional annotation uncharacterized ACR, COG1590 family protein, expressed
UniProt A0A1B6QEI3 , A0A1W0W6N1 , A0A1W0W6I6
Pfam PF13418 PF01344 PF02475 PF02676
Panther DB PTHR23245 PTHR23245:SF31
NCBI CDD KOG1228; Uncharacterized conserved protein KOG1227Putative methyltransferase
KEGG Orthology K15450; tRNA wybutosine-synthesizing protein 3
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G04670 : Met-10+ like family protein / kelch repeat-containing protein
RAP-DB (Rice) LOC_Os07g33100.1 : uncharacterized ACR, COG1590 family protein, expressed
MaizeGDB (Corn) Zm00025a048214
Brachypodium KQK16019 , KQK16020 , KQK16021
Barley HORVU2Hr1G046680.22 , HORVU2Hr1G046680.21 , HORVU2Hr1G046680.20 , HORVU2Hr1G046680.18 , HORVU2Hr1G046680.1 , HORVU2Hr1G046680.2 , HORVU2Hr1G046680.3 , HORVU2Hr1G046680.4 , HORVU2Hr1G046680.5 , HORVU2Hr1G046680.6 , HORVU2Hr1G046680.7 , HORVU2Hr1G046680.8 , HORVU2Hr1G046680.9 , HORVU2Hr1G046680.19 , HORVU2Hr1G046680.12 , HORVU2Hr1G046680.13 , HORVU2Hr1G046680.10 , HORVU2Hr1G046680.11 , HORVU2Hr1G046680.16 , HORVU2Hr1G046680.17 , HORVU2Hr1G046680.14 , HORVU2Hr1G046680.15
Wheat TraesCS2A02G223200 , TraesCS2D02G229200 , TraesCS2B02G248800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G048800 - K12599: SKI2, antiviral helicase SKI2
2 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
3 Sobic.004G314000 expressed protein -
4 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
5 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
6 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
7 Sobic.002G397500 SAC3/GANP family protein, expressed -
8 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
9 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
10 Sobic.009G247400 PX domain containing protein, putative, expressed K17925: sorting nexin-13
11 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
12 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
13 Sobic.007G157000 protein transport protein, putative, expressed K14006: protein transport protein SEC23
14 Sobic.002G299700 ATGRIP/GRIP, putative, expressed -
15 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
16 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
17 Sobic.007G207200 phenylalanyl-tRNA synthetase beta chain, putative, expressed K01890: FARSB, phenylalanyl-tRNA synthetase beta chain
18 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
19 Sobic.004G209600 SWIM zinc finger family protein, putative, expressed -
20 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3


Gene co-expression network
sample Sobic002G317200 Sobic002G317200 Sobic004G048800 Sobic004G048800 Sobic002G317200--Sobic004G048800 Sobic001G219600 Sobic001G219600 Sobic002G317200--Sobic001G219600 Sobic004G314000 Sobic004G314000 Sobic002G317200--Sobic004G314000 Sobic001G433800 Sobic001G433800 Sobic002G317200--Sobic001G433800 Sobic003G095900 Sobic003G095900 Sobic002G317200--Sobic003G095900 Sobic004G242400 Sobic004G242400 Sobic002G317200--Sobic004G242400 Sobic002G397500 Sobic002G397500 Sobic002G317200--Sobic002G397500 Sobic005G112300 Sobic005G112300 Sobic002G317200--Sobic005G112300 Sobic009G260500 Sobic009G260500 Sobic002G317200--Sobic009G260500 Sobic008G098300 Sobic008G098300 Sobic004G048800--Sobic008G098300 Sobic001G398800 Sobic001G398800 Sobic004G048800--Sobic001G398800 Sobic004G048800--Sobic004G242400 Sobic010G001100 Sobic010G001100 Sobic004G048800--Sobic010G001100 Sobic003G360400 Sobic003G360400 Sobic004G048800--Sobic003G360400 Sobic001G363500 Sobic001G363500 Sobic004G048800--Sobic001G363500 Sobic004G048800--Sobic002G317200 Sobic004G048800--Sobic001G433800 Sobic004G048800--Sobic005G112300 Sobic001G219600--Sobic009G260500 Sobic002G309600 Sobic002G309600 Sobic001G219600--Sobic002G309600 Sobic001G219600--Sobic002G317200 Sobic009G047200 Sobic009G047200 Sobic001G219600--Sobic009G047200 Sobic003G141500 Sobic003G141500 Sobic001G219600--Sobic003G141500 Sobic010G139000 Sobic010G139000 Sobic001G219600--Sobic010G139000 Sobic001G071400 Sobic001G071400 Sobic001G219600--Sobic001G071400 Sobic001G219600--Sobic002G397500 Sobic001G020000 Sobic001G020000 Sobic001G219600--Sobic001G020000 Sobic004G314000--Sobic010G139000 Sobic005G008800 Sobic005G008800 Sobic004G314000--Sobic005G008800 Sobic004G314000--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic004G314000--Sobic010G279450 Sobic004G314000--Sobic004G242400 Sobic010G206900 Sobic010G206900 Sobic004G314000--Sobic010G206900 Sobic003G401600 Sobic003G401600 Sobic004G314000--Sobic003G401600 Sobic004G314000--Sobic002G309600 Sobic009G040600 Sobic009G040600 Sobic004G314000--Sobic009G040600 Sobic010G112100 Sobic010G112100 Sobic001G433800--Sobic010G112100 Sobic001G433800--Sobic003G360400 Sobic007G063000 Sobic007G063000 Sobic001G433800--Sobic007G063000 Sobic001G433800--Sobic005G112300 Sobic001G433800--Sobic004G242400 Sobic002G133300 Sobic002G133300 Sobic001G433800--Sobic002G133300 Sobic001G433800--Sobic001G363500 Sobic006G252900 Sobic006G252900 Sobic001G433800--Sobic006G252900 Sobic006G041600 Sobic006G041600 Sobic001G433800--Sobic006G041600 Sobic003G095900--Sobic004G242400 Sobic003G095900--Sobic001G433800 Sobic003G095900--Sobic002G133300 Sobic001G089600 Sobic001G089600 Sobic003G095900--Sobic001G089600 Sobic006G088200 Sobic006G088200 Sobic003G095900--Sobic006G088200 Sobic003G095900--Sobic003G360400 Sobic009G256400 Sobic009G256400 Sobic003G095900--Sobic009G256400 Sobic004G276400 Sobic004G276400 Sobic003G095900--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic003G095900--Sobic001G289800 Sobic007G062800 Sobic007G062800 Sobic004G242400--Sobic007G062800 Sobic009G109200 Sobic009G109200 Sobic004G242400--Sobic009G109200 Sobic010G105200 Sobic010G105200 Sobic004G242400--Sobic010G105200 Sobic004G242400--Sobic004G276400 Sobic010G010700 Sobic010G010700 Sobic004G242400--Sobic010G010700 Sobic004G242400--Sobic010G112100 Sobic004G242400--Sobic004G314000 Sobic009G256300 Sobic009G256300 Sobic004G242400--Sobic009G256300 Sobic004G242400--Sobic001G433800 Sobic003G408600 Sobic003G408600 Sobic002G397500--Sobic003G408600 Sobic002G397500--Sobic007G062800 Sobic002G397500--Sobic005G112300 Sobic001G540400 Sobic001G540400 Sobic002G397500--Sobic001G540400 Sobic002G397500--Sobic009G109200 Sobic003G072200 Sobic003G072200 Sobic002G397500--Sobic003G072200 Sobic002G397500--Sobic004G242400 Sobic002G397500--Sobic004G276400 Sobic002G397500--Sobic010G112100 Sobic005G112300--Sobic001G363500 Sobic005G112300--Sobic007G062800 Sobic005G112300--Sobic010G112100 Sobic005G112300--Sobic010G139000 Sobic007G105100 Sobic007G105100 Sobic005G112300--Sobic007G105100 Sobic005G112300--Sobic001G540400 Sobic005G112300--Sobic010G010700 Sobic005G112300--Sobic005G008800 Sobic002G071500 Sobic002G071500 Sobic005G112300--Sobic002G071500 Sobic009G260500--Sobic001G219600 Sobic004G009600 Sobic004G009600 Sobic009G260500--Sobic004G009600 Sobic010G277500 Sobic010G277500 Sobic009G260500--Sobic010G277500 Sobic008G009700 Sobic008G009700 Sobic009G260500--Sobic008G009700 Sobic009G260500--Sobic010G139000 Sobic008G028700 Sobic008G028700 Sobic009G260500--Sobic008G028700 Sobic009G260500--Sobic009G040600 Sobic009G260500--Sobic002G309600 Sobic001G311500 Sobic001G311500 Sobic009G260500--Sobic001G311500
Octagon: transcription factors


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