Gene annotation
Transcriptome id Sobic.003G188400.1
Synonym Sb03g025320
Functional annotation glutamate dehydrogenase protein, putative, expressed
UniProt C5XN30
Pfam PF02812 PF00208
Panther DB PTHR11606 PTHR11606:SF4
NCBI CDD KOG2250; Glutamate/leucine/phenylalanine/valine dehydrogenases
KEGG Orthology K00262; E1.4.1.4, glutamate dehydrogenase (NADP+)
Gene Ontology GO:0016491; oxidoreductase activity GO:0006520cellular amino acid metabolic process


Orthologs (automatic annotation)
TAIR AT1G51720 : Amino acid dehydrogenase family protein
RAP-DB (Rice) LOC_Os01g37760.1 : glutamate dehydrogenase protein, putative, expressed
MaizeGDB (Corn) Zm00025a028777
Brachypodium KQK08313
Barley HORVU3Hr1G048870.29 , HORVU3Hr1G048870.28 , HORVU3Hr1G048870.27 , HORVU3Hr1G048870.26 , HORVU3Hr1G048870.25 , HORVU3Hr1G048870.24 , HORVU3Hr1G048870.23 , HORVU3Hr1G048870.22 , HORVU3Hr1G048870.20 , HORVU3Hr1G048870.34 , HORVU3Hr1G048870.35 , HORVU3Hr1G048870.37 , HORVU3Hr1G048870.30 , HORVU3Hr1G048870.31 , HORVU3Hr1G048870.32 , HORVU3Hr1G048870.33 , HORVU3Hr1G048870.16 , HORVU3Hr1G048870.17 , HORVU3Hr1G048870.14 , HORVU3Hr1G048870.15 , HORVU3Hr1G048870.12 , HORVU3Hr1G048870.13 , HORVU3Hr1G048870.10 , HORVU3Hr1G048870.11 , HORVU3Hr1G048870.18 , HORVU3Hr1G048870.19 , HORVU3Hr1G048870.21 , HORVU3Hr1G048870.4 , HORVU3Hr1G048870.5 , HORVU3Hr1G048870.6 , HORVU3Hr1G048870.7 , HORVU3Hr1G048870.1 , HORVU3Hr1G048870.2 , HORVU3Hr1G048870.3 , HORVU3Hr1G048870.8 , HORVU3Hr1G048870.9
Wheat TraesCS3B02G227100 , TraesCS3A02G202500 , TraesCS3A02G202500 , TraesCS3A02G202500 , TraesCS3A02G202500 , TraesCS3D02G206100 , TraesCS3D02G206100 , TraesCS3D02G206100 , TraesCS3D02G206100 , TraesCS3D02G206100
Populus -


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cDNA sequences
Sobic.003G188400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
2 Sobic.001G063700 expressed protein -
3 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
4 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
5 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
6 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
7 Sobic.007G159900 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
8 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
9 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
10 Sobic.005G167700 protein phosphatase 2C, putative, expressed -
11 Sobic.008G002500 RCD1, putative, expressed -
12 Sobic.004G185800 expressed protein -
13 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
14 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
15 Sobic.004G140600 exonuclease, putative, expressed K13288: orn, REX2, oligoribonuclease
16 Sobic.007G183900 ubiquitin family protein, putative, expressed -
17 Sobic.007G157000 protein transport protein, putative, expressed K14006: protein transport protein SEC23
18 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
19 Sobic.002G425500 ATPOT1, putative, expressed -
20 Sobic.004G158400 AML1, putative, expressed -


Gene co-expression network
sample Sobic003G188400 Sobic003G188400 Sobic001G433800 Sobic001G433800 Sobic003G188400--Sobic001G433800 Sobic001G063700 Sobic001G063700 Sobic003G188400--Sobic001G063700 Sobic003G360400 Sobic003G360400 Sobic003G188400--Sobic003G360400 Sobic002G133300 Sobic002G133300 Sobic003G188400--Sobic002G133300 Sobic003G095900 Sobic003G095900 Sobic003G188400--Sobic003G095900 Sobic002G317200 Sobic002G317200 Sobic003G188400--Sobic002G317200 Sobic007G159900 Sobic007G159900 Sobic003G188400--Sobic007G159900 Sobic010G112100 Sobic010G112100 Sobic003G188400--Sobic010G112100 Sobic001G311500 Sobic001G311500 Sobic003G188400--Sobic001G311500 Sobic001G433800--Sobic010G112100 Sobic001G433800--Sobic003G360400 Sobic007G063000 Sobic007G063000 Sobic001G433800--Sobic007G063000 Sobic005G112300 Sobic005G112300 Sobic001G433800--Sobic005G112300 Sobic004G242400 Sobic004G242400 Sobic001G433800--Sobic004G242400 Sobic001G433800--Sobic002G133300 Sobic001G363500 Sobic001G363500 Sobic001G433800--Sobic001G363500 Sobic006G252900 Sobic006G252900 Sobic001G433800--Sobic006G252900 Sobic006G041600 Sobic006G041600 Sobic001G433800--Sobic006G041600 Sobic001G461400 Sobic001G461400 Sobic001G063700--Sobic001G461400 Sobic001G063700--Sobic003G360400 Sobic001G063700--Sobic010G112100 Sobic002G154000 Sobic002G154000 Sobic001G063700--Sobic002G154000 Sobic001G063700--Sobic003G188400 Sobic001G063700--Sobic001G433800 Sobic009G256300 Sobic009G256300 Sobic001G063700--Sobic009G256300 Sobic008G002500 Sobic008G002500 Sobic001G063700--Sobic008G002500 Sobic001G354600 Sobic001G354600 Sobic001G063700--Sobic001G354600 Sobic003G360400--Sobic010G112100 Sobic003G360400--Sobic002G154000 Sobic003G360400--Sobic001G354600 Sobic003G360400--Sobic001G433800 Sobic003G389200 Sobic003G389200 Sobic003G360400--Sobic003G389200 Sobic009G044800 Sobic009G044800 Sobic003G360400--Sobic009G044800 Sobic003G360400--Sobic005G112300 Sobic003G360400--Sobic007G063000 Sobic003G360400--Sobic009G256300 Sobic004G276400 Sobic004G276400 Sobic002G133300--Sobic004G276400 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic001G289800 Sobic001G289800 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic004G131300 Sobic004G131300 Sobic002G133300--Sobic004G131300 Sobic001G194200 Sobic001G194200 Sobic002G133300--Sobic001G194200 Sobic001G493700 Sobic001G493700 Sobic002G133300--Sobic001G493700 Sobic003G095900--Sobic004G242400 Sobic003G095900--Sobic001G433800 Sobic003G095900--Sobic002G133300 Sobic001G089600 Sobic001G089600 Sobic003G095900--Sobic001G089600 Sobic006G088200 Sobic006G088200 Sobic003G095900--Sobic006G088200 Sobic003G095900--Sobic003G360400 Sobic009G256400 Sobic009G256400 Sobic003G095900--Sobic009G256400 Sobic003G095900--Sobic004G276400 Sobic003G095900--Sobic001G289800 Sobic004G048800 Sobic004G048800 Sobic002G317200--Sobic004G048800 Sobic001G219600 Sobic001G219600 Sobic002G317200--Sobic001G219600 Sobic004G314000 Sobic004G314000 Sobic002G317200--Sobic004G314000 Sobic002G317200--Sobic001G433800 Sobic002G317200--Sobic003G095900 Sobic002G317200--Sobic004G242400 Sobic002G317200--Sobic002G397500 Sobic002G317200--Sobic005G112300 Sobic009G260500 Sobic009G260500 Sobic002G317200--Sobic009G260500 Sobic007G159900--Sobic003G360400 Sobic004G158400 Sobic004G158400 Sobic007G159900--Sobic004G158400 Sobic002G366400 Sobic002G366400 Sobic007G159900--Sobic002G366400 Sobic007G159900--Sobic010G112100 Sobic007G183900 Sobic007G183900 Sobic007G159900--Sobic007G183900 Sobic005G064000 Sobic005G064000 Sobic007G159900--Sobic005G064000 Sobic005G100700 Sobic005G100700 Sobic007G159900--Sobic005G100700 Sobic007G159900--Sobic003G188400 Sobic008G113100 Sobic008G113100 Sobic007G159900--Sobic008G113100 Sobic010G112100--Sobic003G360400 Sobic010G112100--Sobic005G112300 Sobic010G112100--Sobic009G256300 Sobic003G408600 Sobic003G408600 Sobic010G112100--Sobic003G408600 Sobic010G112100--Sobic001G433800 Sobic001G540400 Sobic001G540400 Sobic010G112100--Sobic001G540400 Sobic007G062800 Sobic007G062800 Sobic010G112100--Sobic007G062800 Sobic010G112100--Sobic004G242400 Sobic010G112100--Sobic003G389200 Sobic010G139000 Sobic010G139000 Sobic001G311500--Sobic010G139000 Sobic009G247400 Sobic009G247400 Sobic001G311500--Sobic009G247400 Sobic001G311500--Sobic005G112300 Sobic003G059750 Sobic003G059750 Sobic001G311500--Sobic003G059750 Sobic008G009700 Sobic008G009700 Sobic001G311500--Sobic008G009700 Sobic001G311500--Sobic004G314000 Sobic010G279450 Sobic010G279450 Sobic001G311500--Sobic010G279450 Sobic008G028700 Sobic008G028700 Sobic001G311500--Sobic008G028700 Sobic001G311500--Sobic001G363500
Octagon: transcription factors


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