Gene annotation
Transcriptome id Sobic.007G159900.2,Sobic.007G159900.3
Synonym UBP16, Sb07g023330
Functional annotation ubiquitin carboxyl-terminal hydrolase family protein, expressed
UniProt A0A1Z5RA55
Pfam PF13423
Panther DB PTHR24006 PTHR24006:SF494
NCBI CDD KOG1865; Ubiquitin carboxyl-terminal hydrolase
KEGG Orthology K11855; ubiquitin carboxyl-terminal hydrolase 36/42
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G24560 : ubiquitin-specific protease 16
RAP-DB (Rice) LOC_Os08g37350.1 : ubiquitin carboxyl-terminal hydrolase family protein, expressed
MaizeGDB (Corn) Zm00025a005465 , Zm00025a013103 , Zm00025a031241
Brachypodium PNT68296
Barley HORVU5Hr1G069620.11 , HORVU7Hr1G064340.5 , HORVU7Hr1G064340.6 , HORVU7Hr1G064340.1 , HORVU7Hr1G064340.2 , HORVU7Hr1G064340.3 , HORVU5Hr1G069620.8 , HORVU5Hr1G069620.9 , HORVU5Hr1G069620.6 , HORVU5Hr1G069620.7 , HORVU5Hr1G069620.4 , HORVU5Hr1G069620.5 , HORVU5Hr1G069620.2 , HORVU5Hr1G069620.3 , HORVU5Hr1G069620.1 , HORVU5Hr1G069620.15 , HORVU5Hr1G069620.16 , HORVU5Hr1G069620.17 , HORVU5Hr1G069620.10 , HORVU5Hr1G069620.13 , HORVU5Hr1G069620.18 , HORVU5Hr1G069620.19 , HORVU5Hr1G069620.29 , HORVU5Hr1G069620.28 , HORVU5Hr1G069620.21 , HORVU5Hr1G069620.20 , HORVU5Hr1G069620.23 , HORVU5Hr1G069620.22 , HORVU5Hr1G069620.25 , HORVU5Hr1G069620.24 , HORVU5Hr1G069620.27 , HORVU5Hr1G069620.26
Wheat TraesCS7A02G282200 , TraesCS5D02G252600 , TraesCS5D02G252600 , TraesCS5D02G252600 , TraesCS5A02G246000 , TraesCS5B02G243400 , TraesCS7A02G282200 , TraesCS7A02G282200 , TraesCS7A02G282200 , TraesCS7A02G282200 , TraesCS5A02G246000 , TraesCS7B02G179000 , TraesCS7B02G179000 , TraesCS7B02G179000 , TraesCS7B02G179000 , TraesCS7B02G179000 , TraesCS7B02G179000 , TraesCS5A02G246000 , TraesCS7D02G280800 , TraesCS7A02G282200 , TraesCS7D02G280800 , TraesCS7D02G280800 , TraesCS7D02G280800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
2 Sobic.004G158400 AML1, putative, expressed -
3 Sobic.002G366400 histone deacetylase, putative, expressed K11407: histone deacetylase 6
4 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
5 Sobic.007G183900 ubiquitin family protein, putative, expressed -
6 Sobic.005G064000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
7 Sobic.005G100700 mRNA-capping enzyme, putative, expressed -
8 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
9 Sobic.008G113100 protein binding protein, putative, expressed -
10 Sobic.001G063700 expressed protein -
11 Sobic.006G222300 MBTB7 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
12 Sobic.003G266001 - -
13 Sobic.003G217900 GDSL-like lipase/acylhydrolase, putative, expressed -
14 Sobic.002G154000 EDM2, putative, expressed -
15 Sobic.001G456900 expressed protein -
16 Sobic.003G389200 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1
17 Sobic.009G024400 ZOS5-03 - C2H2 zinc finger protein, expressed K09191: general transcription factor IIIA
18 Sobic.003G170900 - -
19 Sobic.010G069100 expressed protein -
20 Sobic.006G118700 MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic007G159900 Sobic007G159900 Sobic003G360400 Sobic003G360400 Sobic007G159900--Sobic003G360400 Sobic004G158400 Sobic004G158400 Sobic007G159900--Sobic004G158400 Sobic002G366400 Sobic002G366400 Sobic007G159900--Sobic002G366400 Sobic010G112100 Sobic010G112100 Sobic007G159900--Sobic010G112100 Sobic007G183900 Sobic007G183900 Sobic007G159900--Sobic007G183900 Sobic005G064000 Sobic005G064000 Sobic007G159900--Sobic005G064000 Sobic005G100700 Sobic005G100700 Sobic007G159900--Sobic005G100700 Sobic003G188400 Sobic003G188400 Sobic007G159900--Sobic003G188400 Sobic008G113100 Sobic008G113100 Sobic007G159900--Sobic008G113100 Sobic003G360400--Sobic010G112100 Sobic002G154000 Sobic002G154000 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic001G433800 Sobic001G433800 Sobic003G360400--Sobic001G433800 Sobic003G389200 Sobic003G389200 Sobic003G360400--Sobic003G389200 Sobic009G044800 Sobic009G044800 Sobic003G360400--Sobic009G044800 Sobic005G112300 Sobic005G112300 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic009G256300 Sobic009G256300 Sobic003G360400--Sobic009G256300 Sobic004G158400--Sobic007G159900 Sobic005G167700 Sobic005G167700 Sobic004G158400--Sobic005G167700 Sobic001G261492 Sobic001G261492 Sobic004G158400--Sobic001G261492 Sobic004G158400--Sobic003G360400 Sobic007G105100 Sobic007G105100 Sobic004G158400--Sobic007G105100 Sobic004G158400--Sobic010G112100 Sobic004G158400--Sobic001G433800 Sobic004G158400--Sobic005G112300 Sobic004G158400--Sobic003G188400 Sobic003G408600 Sobic003G408600 Sobic002G366400--Sobic003G408600 Sobic002G366400--Sobic010G112100 Sobic002G366400--Sobic007G159900 Sobic006G118700 Sobic006G118700 Sobic002G366400--Sobic006G118700 Sobic002G366400--Sobic003G360400 Sobic002G045600 Sobic002G045600 Sobic002G366400--Sobic002G045600 Sobic002G366400--Sobic007G183900 Sobic003G266001 Sobic003G266001 Sobic002G366400--Sobic003G266001 Sobic002G366400--Sobic001G354600 Sobic010G112100--Sobic003G360400 Sobic010G112100--Sobic005G112300 Sobic010G112100--Sobic009G256300 Sobic010G112100--Sobic003G408600 Sobic010G112100--Sobic001G433800 Sobic001G540400 Sobic001G540400 Sobic010G112100--Sobic001G540400 Sobic007G062800 Sobic007G062800 Sobic010G112100--Sobic007G062800 Sobic004G242400 Sobic004G242400 Sobic010G112100--Sobic004G242400 Sobic010G112100--Sobic003G389200 Sobic003G416700 Sobic003G416700 Sobic007G183900--Sobic003G416700 Sobic007G183900--Sobic006G118700 Sobic007G183900--Sobic003G360400 Sobic010G236400 Sobic010G236400 Sobic007G183900--Sobic010G236400 Sobic007G183900--Sobic009G044800 Sobic010G069100 Sobic010G069100 Sobic007G183900--Sobic010G069100 Sobic010G275500 Sobic010G275500 Sobic007G183900--Sobic010G275500 Sobic007G183900--Sobic001G354600 Sobic002G264200 Sobic002G264200 Sobic007G183900--Sobic002G264200 Sobic005G064000--Sobic008G113100 Sobic005G064000--Sobic010G112100 Sobic005G064000--Sobic002G264200 Sobic005G064000--Sobic007G159900 Sobic007G065400 Sobic007G065400 Sobic005G064000--Sobic007G065400 Sobic005G064000--Sobic010G069100 Sobic005G064000--Sobic003G360400 Sobic005G064000--Sobic006G118700 Sobic005G064000--Sobic002G154000 Sobic005G100700--Sobic003G360400 Sobic002G344000 Sobic002G344000 Sobic005G100700--Sobic002G344000 Sobic005G100700--Sobic007G159900 Sobic005G100700--Sobic003G389200 Sobic005G100700--Sobic008G113100 Sobic007G146100 Sobic007G146100 Sobic005G100700--Sobic007G146100 Sobic006G096900 Sobic006G096900 Sobic005G100700--Sobic006G096900 Sobic001G456300 Sobic001G456300 Sobic005G100700--Sobic001G456300 Sobic005G100700--Sobic010G112100 Sobic003G188400--Sobic001G433800 Sobic001G063700 Sobic001G063700 Sobic003G188400--Sobic001G063700 Sobic003G188400--Sobic003G360400 Sobic002G133300 Sobic002G133300 Sobic003G188400--Sobic002G133300 Sobic003G095900 Sobic003G095900 Sobic003G188400--Sobic003G095900 Sobic002G317200 Sobic002G317200 Sobic003G188400--Sobic002G317200 Sobic003G188400--Sobic007G159900 Sobic003G188400--Sobic010G112100 Sobic001G311500 Sobic001G311500 Sobic003G188400--Sobic001G311500 Sobic004G258700 Sobic004G258700 Sobic008G113100--Sobic004G258700 Sobic008G028700 Sobic008G028700 Sobic008G113100--Sobic008G028700 Sobic008G113100--Sobic005G064000 Sobic008G113100--Sobic007G065400 Sobic001G456900 Sobic001G456900 Sobic008G113100--Sobic001G456900 Sobic009G024000 Sobic009G024000 Sobic008G113100--Sobic009G024000 Sobic009G040600 Sobic009G040600 Sobic008G113100--Sobic009G040600 Sobic004G208900 Sobic004G208900 Sobic008G113100--Sobic004G208900 Sobic004G039200 Sobic004G039200 Sobic008G113100--Sobic004G039200
Octagon: transcription factors


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