Gene annotation
Transcriptome id Sobic.001G456900.2,Sobic.001G456900.1
Synonym Sb01g042920, RIK
Functional annotation expressed protein
UniProt A0A1B6QPN3 , A0A1B6QPN2
Pfam -
Panther DB PTHR15744 PTHR15744:SF0
NCBI CDD KOG1960; Predicted RNA-binding protein, contains KH domains
KEGG Orthology -
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT3G29390 : RS2-interacting KH protein
RAP-DB (Rice) LOC_Os03g11520.1,LOC_Os03g11520.2 : expressed protein
MaizeGDB (Corn) Zm00025a001291
Brachypodium PNT77886 , KQK22904 , KQK22905 , KQK22906 , KQK22907 , KQK22908
Barley HORVU4Hr1G067960.18 , HORVU4Hr1G067960.19 , HORVU4Hr1G067960.10 , HORVU4Hr1G067960.11 , HORVU4Hr1G067960.12 , HORVU4Hr1G067960.13 , HORVU4Hr1G067960.14 , HORVU4Hr1G067960.15 , HORVU4Hr1G067960.16 , HORVU4Hr1G067960.17 , HORVU4Hr1G067960.21 , HORVU4Hr1G067960.20 , HORVU4Hr1G067960.22 , HORVU4Hr1G067960.8 , HORVU4Hr1G067960.9 , HORVU4Hr1G067960.2 , HORVU4Hr1G067960.3 , HORVU4Hr1G067960.1 , HORVU4Hr1G067960.6 , HORVU4Hr1G067960.7 , HORVU4Hr1G067960.4 , HORVU4Hr1G067960.5
Wheat TraesCS4A02G057600 , TraesCS4A02G057600 , TraesCS4A02G057600 , TraesCS4A02G057600 , TraesCS4B02G247400 , TraesCS4B02G247400 , TraesCS4D02G246700 , TraesCS4D02G246700 , TraesCS4D02G246700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G456900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G036050 - -
2 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
3 Sobic.004G258700 PHD-finger family protein, expressed -
4 Sobic.008G113100 protein binding protein, putative, expressed -
5 Sobic.008G028700 SET domain containing protein, expressed -
6 Sobic.002G180666 - -
7 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
8 Sobic.003G398700 expressed protein K15210: snRNA-activating protein complex subunit 3
9 Sobic.003G101500 dnaJ domain containing protein, expressed -
10 Sobic.002G133400 CTR1-like protein kinase, putative, expressed K14510: serine/threonine-protein kinase CTR1
11 Sobic.006G216800 AAA family ATPase, putative, expressed K13339: PEX6, peroxin-6
12 Sobic.003G148000 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
13 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
14 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
15 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
16 Sobic.008G044100 expressed protein -
17 Sobic.004G040350 - -
18 Sobic.002G145101 - -
19 Sobic.006G032500 - -
20 Sobic.010G123600 WW domain containing protein, expressed -


Gene co-expression network
sample Sobic001G456900 Sobic001G456900 Sobic001G036050 Sobic001G036050 Sobic001G456900--Sobic001G036050 Sobic010G139000 Sobic010G139000 Sobic001G456900--Sobic010G139000 Sobic004G258700 Sobic004G258700 Sobic001G456900--Sobic004G258700 Sobic008G113100 Sobic008G113100 Sobic001G456900--Sobic008G113100 Sobic008G028700 Sobic008G028700 Sobic001G456900--Sobic008G028700 Sobic002G180666 Sobic002G180666 Sobic001G456900--Sobic002G180666 Sobic001G311500 Sobic001G311500 Sobic001G456900--Sobic001G311500 Sobic003G398700 Sobic003G398700 Sobic001G456900--Sobic003G398700 Sobic003G101500 Sobic003G101500 Sobic001G456900--Sobic003G101500 Sobic001G036050--Sobic010G139000 Sobic001G036050--Sobic001G456900 Sobic004G096600 Sobic004G096600 Sobic001G036050--Sobic004G096600 Sobic002G133400 Sobic002G133400 Sobic001G036050--Sobic002G133400 Sobic006G216800 Sobic006G216800 Sobic001G036050--Sobic006G216800 Sobic004G314000 Sobic004G314000 Sobic001G036050--Sobic004G314000 Sobic001G036050--Sobic004G258700 Sobic010G123600 Sobic010G123600 Sobic001G036050--Sobic010G123600 Sobic003G170900 Sobic003G170900 Sobic001G036050--Sobic003G170900 Sobic010G139000--Sobic004G314000 Sobic005G112300 Sobic005G112300 Sobic010G139000--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic010G139000--Sobic010G279450 Sobic010G206900 Sobic010G206900 Sobic010G139000--Sobic010G206900 Sobic010G139000--Sobic001G311500 Sobic010G139000--Sobic001G036050 Sobic010G112100 Sobic010G112100 Sobic010G139000--Sobic010G112100 Sobic010G010700 Sobic010G010700 Sobic010G139000--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic010G139000--Sobic005G008800 Sobic004G258700--Sobic008G113100 Sobic004G258700--Sobic008G028700 Sobic004G258700--Sobic001G456900 Sobic003G148000 Sobic003G148000 Sobic004G258700--Sobic003G148000 Sobic004G258700--Sobic003G101500 Sobic010G277500 Sobic010G277500 Sobic004G258700--Sobic010G277500 Sobic007G065400 Sobic007G065400 Sobic004G258700--Sobic007G065400 Sobic007G161000 Sobic007G161000 Sobic004G258700--Sobic007G161000 Sobic009G040600 Sobic009G040600 Sobic004G258700--Sobic009G040600 Sobic008G113100--Sobic004G258700 Sobic008G113100--Sobic008G028700 Sobic005G064000 Sobic005G064000 Sobic008G113100--Sobic005G064000 Sobic008G113100--Sobic007G065400 Sobic008G113100--Sobic001G456900 Sobic009G024000 Sobic009G024000 Sobic008G113100--Sobic009G024000 Sobic008G113100--Sobic009G040600 Sobic004G208900 Sobic004G208900 Sobic008G113100--Sobic004G208900 Sobic004G039200 Sobic004G039200 Sobic008G113100--Sobic004G039200 Sobic008G028700--Sobic010G279450 Sobic008G028700--Sobic009G040600 Sobic004G009600 Sobic004G009600 Sobic008G028700--Sobic004G009600 Sobic008G028700--Sobic004G258700 Sobic008G028700--Sobic007G065400 Sobic008G028700--Sobic010G139000 Sobic002G006900 Sobic002G006900 Sobic008G028700--Sobic002G006900 Sobic002G145101 Sobic002G145101 Sobic008G028700--Sobic002G145101 Sobic008G028700--Sobic008G113100 Sobic002G180666--Sobic003G148000 Sobic006G032500 Sobic006G032500 Sobic002G180666--Sobic006G032500 Sobic002G180666--Sobic002G145101 Sobic006G048500 Sobic006G048500 Sobic002G180666--Sobic006G048500 Sobic002G343901 Sobic002G343901 Sobic002G180666--Sobic002G343901 Sobic003G372700 Sobic003G372700 Sobic002G180666--Sobic003G372700 Sobic004G007100 Sobic004G007100 Sobic002G180666--Sobic004G007100 Sobic007G161300 Sobic007G161300 Sobic002G180666--Sobic007G161300 Sobic002G180666--Sobic001G456900 Sobic001G311500--Sobic010G139000 Sobic009G247400 Sobic009G247400 Sobic001G311500--Sobic009G247400 Sobic001G311500--Sobic005G112300 Sobic003G059750 Sobic003G059750 Sobic001G311500--Sobic003G059750 Sobic008G009700 Sobic008G009700 Sobic001G311500--Sobic008G009700 Sobic001G311500--Sobic004G314000 Sobic001G311500--Sobic010G279450 Sobic001G311500--Sobic008G028700 Sobic001G363500 Sobic001G363500 Sobic001G311500--Sobic001G363500 Sobic002G257750 Sobic002G257750 Sobic003G398700--Sobic002G257750 Sobic003G398700--Sobic001G456900 Sobic008G044100 Sobic008G044100 Sobic003G398700--Sobic008G044100 Sobic010G021500 Sobic010G021500 Sobic003G398700--Sobic010G021500 Sobic007G136800 Sobic007G136800 Sobic003G398700--Sobic007G136800 Sobic004G185800 Sobic004G185800 Sobic003G398700--Sobic004G185800 Sobic003G168100 Sobic003G168100 Sobic003G398700--Sobic003G168100 Sobic003G398700--Sobic008G113100 Sobic010G126000 Sobic010G126000 Sobic003G398700--Sobic010G126000 Sobic003G101500--Sobic004G039200 Sobic003G101500--Sobic004G258700 Sobic003G101500--Sobic007G161000 Sobic009G260500 Sobic009G260500 Sobic003G101500--Sobic009G260500 Sobic007G054400 Sobic007G054400 Sobic003G101500--Sobic007G054400 Sobic003G101500--Sobic001G456900 Sobic003G101500--Sobic008G113100 Sobic003G101500--Sobic008G028700 Sobic003G101500--Sobic009G024000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.