Gene annotation
Transcriptome id Sobic.007G161000.1
Synonym Sb07g023430, SMC1, ATSMC1, TTN8
Functional annotation RecF/RecN/SMC N terminal domain containing protein, expressed
UniProt A0A097PJD8 , A0A1B6PI36
Pfam PF13476 PF06470
Panther DB PTHR18937 PTHR18937:SF177
NCBI CDD -
KEGG Orthology K06636; structural maintenance of chromosome 1
Gene Ontology GO:0005694; chromosome GO:0005524ATP binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G54670 : Structural maintenance of chromosomes (SMC) family protein
RAP-DB (Rice) LOC_Os12g44390.1 : RecF/RecN/SMC N terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a005485
Brachypodium KQJ94723 , KQJ94724 , PNT66474
Barley HORVU7Hr1G066300.18 , HORVU7Hr1G066300.10 , HORVU7Hr1G066300.11 , HORVU7Hr1G066300.12 , HORVU7Hr1G066300.13 , HORVU7Hr1G066300.14 , HORVU7Hr1G066300.15 , HORVU7Hr1G066300.16 , HORVU7Hr1G066300.8 , HORVU7Hr1G066300.9 , HORVU7Hr1G066300.2 , HORVU7Hr1G066300.3 , HORVU7Hr1G066300.1 , HORVU7Hr1G066300.6 , HORVU7Hr1G066300.7 , HORVU7Hr1G066300.4 , HORVU7Hr1G066300.5
Wheat TraesCS7D02G289400 , TraesCS7D02G289400 , TraesCS7A02G295800 , TraesCS7D02G289400 , TraesCS7D02G289400 , TraesCS7A02G295800 , TraesCS7A02G295800 , TraesCS7A02G295800 , TraesCS7D02G289400 , TraesCS7D02G289400 , TraesCS7D02G289400 , TraesCS7D02G289400 , TraesCS7B02G185100 , TraesCS7B02G185100 , TraesCS7B02G185100 , TraesCS7B02G185100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
2 Sobic.007G117400 expressed protein -
3 Sobic.009G024000 nuclear factor related to kappa-B-binding protein, related, putative, expressed K11671: NFRKB, nuclear factor related to kappa-B-binding protein
4 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
5 Sobic.006G182900 expressed protein -
6 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
7 Sobic.004G314000 expressed protein -
8 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
9 Sobic.008G028700 SET domain containing protein, expressed -
10 Sobic.002G031400 OsFBL39 - F-box domain and LRR containing protein, expressed -
11 Sobic.003G101500 dnaJ domain containing protein, expressed -
12 Sobic.008G113100 protein binding protein, putative, expressed -
13 Sobic.004G258700 PHD-finger family protein, expressed -
14 Sobic.001G365900 PWWP domain containing protein, expressed -
15 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
16 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -
17 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
18 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
19 Sobic.004G209600 SWIM zinc finger family protein, putative, expressed -
20 Sobic.009G138800 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck


Gene co-expression network
sample Sobic007G161000 Sobic007G161000 Sobic004G039200 Sobic004G039200 Sobic007G161000--Sobic004G039200 Sobic007G117400 Sobic007G117400 Sobic007G161000--Sobic007G117400 Sobic009G024000 Sobic009G024000 Sobic007G161000--Sobic009G024000 Sobic010G139000 Sobic010G139000 Sobic007G161000--Sobic010G139000 Sobic006G182900 Sobic006G182900 Sobic007G161000--Sobic006G182900 Sobic002G309600 Sobic002G309600 Sobic007G161000--Sobic002G309600 Sobic004G314000 Sobic004G314000 Sobic007G161000--Sobic004G314000 Sobic002G134200 Sobic002G134200 Sobic007G161000--Sobic002G134200 Sobic008G028700 Sobic008G028700 Sobic007G161000--Sobic008G028700 Sobic004G039200--Sobic009G024000 Sobic003G101500 Sobic003G101500 Sobic004G039200--Sobic003G101500 Sobic004G039200--Sobic007G161000 Sobic007G065400 Sobic007G065400 Sobic004G039200--Sobic007G065400 Sobic008G113100 Sobic008G113100 Sobic004G039200--Sobic008G113100 Sobic004G039200--Sobic008G028700 Sobic008G009700 Sobic008G009700 Sobic004G039200--Sobic008G009700 Sobic004G039200--Sobic007G117400 Sobic007G054400 Sobic007G054400 Sobic004G039200--Sobic007G054400 Sobic007G117400--Sobic002G309600 Sobic001G241200 Sobic001G241200 Sobic007G117400--Sobic001G241200 Sobic004G065100 Sobic004G065100 Sobic007G117400--Sobic004G065100 Sobic007G117400--Sobic007G161000 Sobic003G280800 Sobic003G280800 Sobic007G117400--Sobic003G280800 Sobic004G009600 Sobic004G009600 Sobic007G117400--Sobic004G009600 Sobic001G154900 Sobic001G154900 Sobic007G117400--Sobic001G154900 Sobic009G040600 Sobic009G040600 Sobic007G117400--Sobic009G040600 Sobic005G008800 Sobic005G008800 Sobic007G117400--Sobic005G008800 Sobic009G024000--Sobic004G039200 Sobic009G024000--Sobic007G161000 Sobic009G024000--Sobic008G028700 Sobic009G024000--Sobic008G113100 Sobic009G024000--Sobic007G117400 Sobic009G024000--Sobic009G040600 Sobic009G024000--Sobic004G009600 Sobic009G024000--Sobic002G309600 Sobic009G024000--Sobic003G101500 Sobic010G139000--Sobic004G314000 Sobic005G112300 Sobic005G112300 Sobic010G139000--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic010G139000--Sobic010G279450 Sobic010G206900 Sobic010G206900 Sobic010G139000--Sobic010G206900 Sobic001G311500 Sobic001G311500 Sobic010G139000--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic010G139000--Sobic001G036050 Sobic010G112100 Sobic010G112100 Sobic010G139000--Sobic010G112100 Sobic010G010700 Sobic010G010700 Sobic010G139000--Sobic010G010700 Sobic010G139000--Sobic005G008800 Sobic003G429650 Sobic003G429650 Sobic006G182900--Sobic003G429650 Sobic006G048500 Sobic006G048500 Sobic006G182900--Sobic006G048500 Sobic006G182900--Sobic007G161000 Sobic001G365900 Sobic001G365900 Sobic006G182900--Sobic001G365900 Sobic007G116200 Sobic007G116200 Sobic006G182900--Sobic007G116200 Sobic004G096600 Sobic004G096600 Sobic006G182900--Sobic004G096600 Sobic006G182900--Sobic002G134200 Sobic001G214300 Sobic001G214300 Sobic006G182900--Sobic001G214300 Sobic009G209300 Sobic009G209300 Sobic006G182900--Sobic009G209300 Sobic002G309600--Sobic003G280800 Sobic002G309600--Sobic002G134200 Sobic002G309600--Sobic007G117400 Sobic002G309600--Sobic008G009700 Sobic001G071400 Sobic001G071400 Sobic002G309600--Sobic001G071400 Sobic002G309600--Sobic005G112300 Sobic002G309600--Sobic004G065100 Sobic002G309600--Sobic001G154900 Sobic002G006900 Sobic002G006900 Sobic002G309600--Sobic002G006900 Sobic004G314000--Sobic010G139000 Sobic004G314000--Sobic005G008800 Sobic004G314000--Sobic005G112300 Sobic004G314000--Sobic010G279450 Sobic004G242400 Sobic004G242400 Sobic004G314000--Sobic004G242400 Sobic004G314000--Sobic010G206900 Sobic003G401600 Sobic003G401600 Sobic004G314000--Sobic003G401600 Sobic004G314000--Sobic002G309600 Sobic004G314000--Sobic009G040600 Sobic002G134200--Sobic001G071400 Sobic002G134200--Sobic002G309600 Sobic002G134200--Sobic003G280800 Sobic006G216800 Sobic006G216800 Sobic002G134200--Sobic006G216800 Sobic002G133400 Sobic002G133400 Sobic002G134200--Sobic002G133400 Sobic008G047800 Sobic008G047800 Sobic002G134200--Sobic008G047800 Sobic002G134200--Sobic005G008800 Sobic009G191000 Sobic009G191000 Sobic002G134200--Sobic009G191000 Sobic002G008900 Sobic002G008900 Sobic002G134200--Sobic002G008900 Sobic008G028700--Sobic010G279450 Sobic008G028700--Sobic009G040600 Sobic008G028700--Sobic004G009600 Sobic004G258700 Sobic004G258700 Sobic008G028700--Sobic004G258700 Sobic008G028700--Sobic007G065400 Sobic008G028700--Sobic010G139000 Sobic008G028700--Sobic002G006900 Sobic002G145101 Sobic002G145101 Sobic008G028700--Sobic002G145101 Sobic008G028700--Sobic008G113100
Octagon: transcription factors


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