Gene annotation
Transcriptome id Sobic.009G138800.3,Sobic.009G138800.5,Sobic.009G138800.2,Sobic.009G138800.4
Synonym Sb09g020460
Functional annotation crooked neck, putative, expressed
UniProt C5YXW0 , Q9XEP2
Pfam PF02184
Panther DB PTHR11246 PTHR11246:SF14
NCBI CDD -
KEGG Orthology K12869; CRN, CRNKL1, CLF1, crooked neck
Gene Ontology GO:0006396; RNA processing GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT5G41770 : crooked neck protein, putative / cell cycle protein, putative
RAP-DB (Rice) LOC_Os05g22260.1 : crooked neck, putative, expressed
MaizeGDB (Corn) Zm00025a007481 , Zm00025a017118
Brachypodium KQK18067
Barley HORVU5Hr1G075030.2 , HORVU5Hr1G075030.1 , HORVU7Hr1G089610.5 , HORVU7Hr1G089610.4 , HORVU7Hr1G089610.3 , HORVU7Hr1G089610.2 , HORVU7Hr1G089610.1
Wheat TraesCS5D02G284700 , TraesCS7B02G276500 , TraesCS5B02G277100 , TraesCS7D02G371400 , TraesCS7A02G351600
Populus -


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cDNA sequences
Sobic.009G138800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G104500 phosphatidylinositol kinase, putative, expressed K00888: phosphatidylinositol 4-kinase A
2 Sobic.007G126600 RNA recognition motif containing protein, putative, expressed K12822: RBM25, RNA-binding protein 25
3 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
4 Sobic.006G209850 - -
5 Sobic.007G117400 expressed protein -
6 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
7 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
8 Sobic.001G274200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
9 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
10 Sobic.004G145500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
11 Sobic.008G192600 serine/threonine-protein kinase PRP4, putative, expressed K08827: serine/threonine-protein kinase PRP4
12 Sobic.001G241200 protein kinase domain containing protein, expressed -
13 Sobic.004G216500 hypothetical protein -
14 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -
15 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -
16 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
17 Sobic.001G420200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
18 Sobic.003G401600 expressed protein K12879: THO complex subunit 2
19 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
20 Sobic.006G021250 - -


Gene co-expression network
sample Sobic009G138800 Sobic009G138800 Sobic005G104500 Sobic005G104500 Sobic009G138800--Sobic005G104500 Sobic007G126600 Sobic007G126600 Sobic009G138800--Sobic007G126600 Sobic007G161000 Sobic007G161000 Sobic009G138800--Sobic007G161000 Sobic006G209850 Sobic006G209850 Sobic009G138800--Sobic006G209850 Sobic007G117400 Sobic007G117400 Sobic009G138800--Sobic007G117400 Sobic001G511500 Sobic001G511500 Sobic009G138800--Sobic001G511500 Sobic003G280800 Sobic003G280800 Sobic009G138800--Sobic003G280800 Sobic001G274200 Sobic001G274200 Sobic009G138800--Sobic001G274200 Sobic003G119000 Sobic003G119000 Sobic009G138800--Sobic003G119000 Sobic004G065100 Sobic004G065100 Sobic005G104500--Sobic004G065100 Sobic002G309600 Sobic002G309600 Sobic005G104500--Sobic002G309600 Sobic001G241200 Sobic001G241200 Sobic005G104500--Sobic001G241200 Sobic005G104500--Sobic009G138800 Sobic002G006900 Sobic002G006900 Sobic005G104500--Sobic002G006900 Sobic005G104500--Sobic003G280800 Sobic005G104500--Sobic003G119000 Sobic005G104500--Sobic007G126600 Sobic005G104500--Sobic007G117400 Sobic008G192600 Sobic008G192600 Sobic007G126600--Sobic008G192600 Sobic007G126600--Sobic003G119000 Sobic002G404700 Sobic002G404700 Sobic007G126600--Sobic002G404700 Sobic007G065400 Sobic007G065400 Sobic007G126600--Sobic007G065400 Sobic009G026500 Sobic009G026500 Sobic007G126600--Sobic009G026500 Sobic007G126600--Sobic002G006900 Sobic003G108700 Sobic003G108700 Sobic007G126600--Sobic003G108700 Sobic001G347300 Sobic001G347300 Sobic007G126600--Sobic001G347300 Sobic007G126600--Sobic001G241200 Sobic004G039200 Sobic004G039200 Sobic007G161000--Sobic004G039200 Sobic007G161000--Sobic007G117400 Sobic009G024000 Sobic009G024000 Sobic007G161000--Sobic009G024000 Sobic010G139000 Sobic010G139000 Sobic007G161000--Sobic010G139000 Sobic006G182900 Sobic006G182900 Sobic007G161000--Sobic006G182900 Sobic007G161000--Sobic002G309600 Sobic004G314000 Sobic004G314000 Sobic007G161000--Sobic004G314000 Sobic002G134200 Sobic002G134200 Sobic007G161000--Sobic002G134200 Sobic008G028700 Sobic008G028700 Sobic007G161000--Sobic008G028700 Sobic006G128900 Sobic006G128900 Sobic006G209850--Sobic006G128900 Sobic006G209850--Sobic001G511500 Sobic006G209850--Sobic003G280800 Sobic010G277500 Sobic010G277500 Sobic006G209850--Sobic010G277500 Sobic008G024600 Sobic008G024600 Sobic006G209850--Sobic008G024600 Sobic002G053000 Sobic002G053000 Sobic006G209850--Sobic002G053000 Sobic010G129200 Sobic010G129200 Sobic006G209850--Sobic010G129200 Sobic004G145500 Sobic004G145500 Sobic006G209850--Sobic004G145500 Sobic002G243900 Sobic002G243900 Sobic006G209850--Sobic002G243900 Sobic007G117400--Sobic002G309600 Sobic007G117400--Sobic001G241200 Sobic007G117400--Sobic004G065100 Sobic007G117400--Sobic007G161000 Sobic007G117400--Sobic003G280800 Sobic004G009600 Sobic004G009600 Sobic007G117400--Sobic004G009600 Sobic001G154900 Sobic001G154900 Sobic007G117400--Sobic001G154900 Sobic009G040600 Sobic009G040600 Sobic007G117400--Sobic009G040600 Sobic005G008800 Sobic005G008800 Sobic007G117400--Sobic005G008800 Sobic007G000100 Sobic007G000100 Sobic001G511500--Sobic007G000100 Sobic001G511500--Sobic006G209850 Sobic001G511500--Sobic006G128900 Sobic001G511500--Sobic003G119000 Sobic004G031700 Sobic004G031700 Sobic001G511500--Sobic004G031700 Sobic001G306900 Sobic001G306900 Sobic001G511500--Sobic001G306900 Sobic003G445400 Sobic003G445400 Sobic001G511500--Sobic003G445400 Sobic003G307000 Sobic003G307000 Sobic001G511500--Sobic003G307000 Sobic006G032400 Sobic006G032400 Sobic001G511500--Sobic006G032400 Sobic003G280800--Sobic002G309600 Sobic001G071400 Sobic001G071400 Sobic003G280800--Sobic001G071400 Sobic003G280800--Sobic002G134200 Sobic003G280800--Sobic006G209850 Sobic003G280800--Sobic003G119000 Sobic001G474600 Sobic001G474600 Sobic003G280800--Sobic001G474600 Sobic003G280800--Sobic007G117400 Sobic006G216800 Sobic006G216800 Sobic003G280800--Sobic006G216800 Sobic003G372700 Sobic003G372700 Sobic003G280800--Sobic003G372700 Sobic001G420200 Sobic001G420200 Sobic001G274200--Sobic001G420200 Sobic007G096600 Sobic007G096600 Sobic001G274200--Sobic007G096600 Sobic003G268300 Sobic003G268300 Sobic001G274200--Sobic003G268300 Sobic008G173900 Sobic008G173900 Sobic001G274200--Sobic008G173900 Sobic002G144933 Sobic002G144933 Sobic001G274200--Sobic002G144933 Sobic001G133466 Sobic001G133466 Sobic001G274200--Sobic001G133466 Sobic007G037900 Sobic007G037900 Sobic001G274200--Sobic007G037900 Sobic001G274200--Sobic002G243900 Sobic010G123901 Sobic010G123901 Sobic001G274200--Sobic010G123901 Sobic003G119000--Sobic003G372700 Sobic002G071500 Sobic002G071500 Sobic003G119000--Sobic002G071500 Sobic003G119000--Sobic003G280800 Sobic003G119000--Sobic007G065400 Sobic007G167500 Sobic007G167500 Sobic003G119000--Sobic007G167500 Sobic003G119000--Sobic007G126600 Sobic003G119000--Sobic001G511500 Sobic003G119000--Sobic002G309600 Sobic003G119000--Sobic001G241200
Octagon: transcription factors


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