Gene annotation
Transcriptome id Sobic.004G216500.1
Synonym Sb04g026170
Functional annotation hypothetical protein
UniProt C5XXP3 , Q9XEQ2 , C6JRJ7 , Q8LJZ2 , Q8LK02 , C6JRU6
Pfam -
Panther DB PTHR33018 PTHR33018:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os10g25960.1 : transposon protein, putative, CACTA, En/Spm sub-class, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G054500 WD domain, G-beta repeat domain containing protein, expressed -
2 Sobic.007G126600 RNA recognition motif containing protein, putative, expressed K12822: RBM25, RNA-binding protein 25
3 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
4 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
5 Sobic.009G138800 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
6 Sobic.003G108700 RNA recognition motif, putative, expressed -
7 Sobic.008G192600 serine/threonine-protein kinase PRP4, putative, expressed K08827: serine/threonine-protein kinase PRP4
8 Sobic.007G167500 expressed protein -
9 Sobic.001G107900 fip1 motif family protein, expressed -
10 Sobic.006G209850 - -
11 Sobic.002G154551 - -
12 Sobic.006G251900 - -
13 Sobic.001G241200 protein kinase domain containing protein, expressed -
14 Sobic.007G117400 expressed protein -
15 Sobic.006G128900 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
16 Sobic.001G544200 endonuclease, putative, expressed K10848: ERCC4, DNA excision repair protein ERCC-4
17 Sobic.007G096000 expressed protein -
18 Sobic.002G404700 expressed protein K11367: chromodomain-helicase-DNA-binding protein 1
19 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
20 Sobic.007G000100 PWWP domain containing protein, expressed -


Gene co-expression network
sample Sobic004G216500 Sobic004G216500 Sobic008G054500 Sobic008G054500 Sobic004G216500--Sobic008G054500 Sobic007G126600 Sobic007G126600 Sobic004G216500--Sobic007G126600 Sobic001G511500 Sobic001G511500 Sobic004G216500--Sobic001G511500 Sobic003G119000 Sobic003G119000 Sobic004G216500--Sobic003G119000 Sobic009G138800 Sobic009G138800 Sobic004G216500--Sobic009G138800 Sobic003G108700 Sobic003G108700 Sobic004G216500--Sobic003G108700 Sobic008G192600 Sobic008G192600 Sobic004G216500--Sobic008G192600 Sobic007G167500 Sobic007G167500 Sobic004G216500--Sobic007G167500 Sobic001G107900 Sobic001G107900 Sobic004G216500--Sobic001G107900 Sobic008G173900 Sobic008G173900 Sobic008G054500--Sobic008G173900 Sobic003G200200 Sobic003G200200 Sobic008G054500--Sobic003G200200 Sobic003G268300 Sobic003G268300 Sobic008G054500--Sobic003G268300 Sobic002G248400 Sobic002G248400 Sobic008G054500--Sobic002G248400 Sobic008G078100 Sobic008G078100 Sobic008G054500--Sobic008G078100 Sobic002G157000 Sobic002G157000 Sobic008G054500--Sobic002G157000 Sobic003G445400 Sobic003G445400 Sobic008G054500--Sobic003G445400 Sobic007G185900 Sobic007G185900 Sobic008G054500--Sobic007G185900 Sobic003G397800 Sobic003G397800 Sobic008G054500--Sobic003G397800 Sobic007G126600--Sobic008G192600 Sobic007G126600--Sobic003G119000 Sobic002G404700 Sobic002G404700 Sobic007G126600--Sobic002G404700 Sobic007G065400 Sobic007G065400 Sobic007G126600--Sobic007G065400 Sobic009G026500 Sobic009G026500 Sobic007G126600--Sobic009G026500 Sobic002G006900 Sobic002G006900 Sobic007G126600--Sobic002G006900 Sobic007G126600--Sobic003G108700 Sobic001G347300 Sobic001G347300 Sobic007G126600--Sobic001G347300 Sobic001G241200 Sobic001G241200 Sobic007G126600--Sobic001G241200 Sobic007G000100 Sobic007G000100 Sobic001G511500--Sobic007G000100 Sobic006G209850 Sobic006G209850 Sobic001G511500--Sobic006G209850 Sobic006G128900 Sobic006G128900 Sobic001G511500--Sobic006G128900 Sobic001G511500--Sobic003G119000 Sobic004G031700 Sobic004G031700 Sobic001G511500--Sobic004G031700 Sobic001G306900 Sobic001G306900 Sobic001G511500--Sobic001G306900 Sobic001G511500--Sobic003G445400 Sobic003G307000 Sobic003G307000 Sobic001G511500--Sobic003G307000 Sobic006G032400 Sobic006G032400 Sobic001G511500--Sobic006G032400 Sobic003G372700 Sobic003G372700 Sobic003G119000--Sobic003G372700 Sobic002G071500 Sobic002G071500 Sobic003G119000--Sobic002G071500 Sobic003G280800 Sobic003G280800 Sobic003G119000--Sobic003G280800 Sobic003G119000--Sobic007G065400 Sobic003G119000--Sobic007G167500 Sobic003G119000--Sobic007G126600 Sobic003G119000--Sobic001G511500 Sobic002G309600 Sobic002G309600 Sobic003G119000--Sobic002G309600 Sobic003G119000--Sobic001G241200 Sobic005G104500 Sobic005G104500 Sobic009G138800--Sobic005G104500 Sobic009G138800--Sobic007G126600 Sobic007G161000 Sobic007G161000 Sobic009G138800--Sobic007G161000 Sobic009G138800--Sobic006G209850 Sobic007G117400 Sobic007G117400 Sobic009G138800--Sobic007G117400 Sobic009G138800--Sobic001G511500 Sobic009G138800--Sobic003G280800 Sobic001G274200 Sobic001G274200 Sobic009G138800--Sobic001G274200 Sobic009G138800--Sobic003G119000 Sobic003G108700--Sobic002G248400 Sobic003G108700--Sobic002G157000 Sobic003G108700--Sobic003G268300 Sobic004G257400 Sobic004G257400 Sobic003G108700--Sobic004G257400 Sobic003G108700--Sobic007G126600 Sobic001G420200 Sobic001G420200 Sobic003G108700--Sobic001G420200 Sobic003G108700--Sobic008G173900 Sobic003G108700--Sobic003G200200 Sobic003G108700--Sobic007G167500 Sobic008G192600--Sobic007G126600 Sobic008G192600--Sobic001G241200 Sobic008G192600--Sobic009G026500 Sobic008G192600--Sobic002G404700 Sobic008G192600--Sobic003G119000 Sobic008G192600--Sobic003G372700 Sobic008G192600--Sobic007G117400 Sobic008G192600--Sobic009G138800 Sobic004G314000 Sobic004G314000 Sobic008G192600--Sobic004G314000 Sobic007G167500--Sobic003G119000 Sobic007G167500--Sobic002G006900 Sobic007G167500--Sobic003G397800 Sobic007G096600 Sobic007G096600 Sobic007G167500--Sobic007G096600 Sobic010G101800 Sobic010G101800 Sobic007G167500--Sobic010G101800 Sobic007G167500--Sobic007G065400 Sobic009G210500 Sobic009G210500 Sobic007G167500--Sobic009G210500 Sobic003G332800 Sobic003G332800 Sobic007G167500--Sobic003G332800 Sobic007G167500--Sobic003G372700 Sobic001G542700 Sobic001G542700 Sobic001G107900--Sobic001G542700 Sobic001G107900--Sobic004G216500 Sobic001G107900--Sobic009G138800 Sobic004G065100 Sobic004G065100 Sobic001G107900--Sobic004G065100 Sobic001G107900--Sobic008G192600 Sobic001G014100 Sobic001G014100 Sobic001G107900--Sobic001G014100 Sobic001G107900--Sobic001G241200 Sobic001G107900--Sobic007G117400 Sobic002G277600 Sobic002G277600 Sobic001G107900--Sobic002G277600
Octagon: transcription factors


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