Gene annotation
Transcriptome id Sobic.002G154551.4,Sobic.002G154551.1,Sobic.002G154551.2,Sobic.002G154551.3
Synonym -
Functional annotation -
UniProt A0A1W0W4A2 , A0A1W0W429
Pfam -
Panther DB PTHR19306 PTHR19306:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G61460 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os05g51790.1 : RecF/RecN/SMC N terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a046320
Brachypodium KQJ86930 , KQJ86931 , KQJ86932 , PNT62808 , PNT62809 , KQJ86929 , KQJ86928 , PNT62810
Barley HORVU5Hr1G050720.3 , HORVU5Hr1G050720.2 , HORVU5Hr1G050720.1 , HORVU5Hr1G050720.7 , HORVU5Hr1G050720.15 , HORVU5Hr1G050720.5 , HORVU5Hr1G050720.4 , HORVU5Hr1G050720.9 , HORVU5Hr1G050720.8 , HORVU5Hr1G050720.13 , HORVU5Hr1G050720.12 , HORVU5Hr1G050720.14 , HORVU6Hr1G010370.1
Wheat TraesCS5D02G166500 , TraesCS6B02G071100 , TraesCSU02G112500 , TraesCS5B02G159900 , TraesCS5B02G159900 , TraesCS5B02G159900 , TraesCS5B02G159900 , TraesCS5A02G162400 , TraesCS5B02G159900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G209850 - -
2 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -
3 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
4 Sobic.008G015500 RNA recognition motif containing protein, putative, expressed K13093: HIV Tat-specific factor 1
5 Sobic.010G277500 expressed protein -
6 Sobic.002G053000 expressed protein -
7 Sobic.003G422300 recA protein, expressed K03553: recombination protein RecA
8 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
9 Sobic.001G274200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
10 Sobic.004G216500 hypothetical protein -
11 Sobic.009G210500 expressed protein -
12 Sobic.001G124000 pinin/SDK/memA protein, putative, expressed K13114: pinin
13 Sobic.001G167200 DNA-directed polymerase, putative, expressed K03511: DNA polymerase kappa
14 Sobic.003G268300 surp module family protein, putative, expressed -
15 Sobic.002G031400 OsFBL39 - F-box domain and LRR containing protein, expressed -
16 Sobic.006G128900 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
17 Sobic.001G420200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
18 Sobic.007G126600 RNA recognition motif containing protein, putative, expressed K12822: RBM25, RNA-binding protein 25
19 Sobic.004G039700 OsFBX188 - F-box domain containing protein, expressed -
20 Sobic.010G202000 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -


Gene co-expression network
sample Sobic002G154551 Sobic002G154551 Sobic006G209850 Sobic006G209850 Sobic002G154551--Sobic006G209850 Sobic004G208900 Sobic004G208900 Sobic002G154551--Sobic004G208900 Sobic001G511500 Sobic001G511500 Sobic002G154551--Sobic001G511500 Sobic008G015500 Sobic008G015500 Sobic002G154551--Sobic008G015500 Sobic010G277500 Sobic010G277500 Sobic002G154551--Sobic010G277500 Sobic002G053000 Sobic002G053000 Sobic002G154551--Sobic002G053000 Sobic003G422300 Sobic003G422300 Sobic002G154551--Sobic003G422300 Sobic003G280800 Sobic003G280800 Sobic002G154551--Sobic003G280800 Sobic001G274200 Sobic001G274200 Sobic002G154551--Sobic001G274200 Sobic006G128900 Sobic006G128900 Sobic006G209850--Sobic006G128900 Sobic006G209850--Sobic001G511500 Sobic006G209850--Sobic003G280800 Sobic006G209850--Sobic010G277500 Sobic008G024600 Sobic008G024600 Sobic006G209850--Sobic008G024600 Sobic006G209850--Sobic002G053000 Sobic010G129200 Sobic010G129200 Sobic006G209850--Sobic010G129200 Sobic004G145500 Sobic004G145500 Sobic006G209850--Sobic004G145500 Sobic002G243900 Sobic002G243900 Sobic006G209850--Sobic002G243900 Sobic009G040600 Sobic009G040600 Sobic004G208900--Sobic009G040600 Sobic004G208900--Sobic010G277500 Sobic003G052200 Sobic003G052200 Sobic004G208900--Sobic003G052200 Sobic010G139000 Sobic010G139000 Sobic004G208900--Sobic010G139000 Sobic008G113100 Sobic008G113100 Sobic004G208900--Sobic008G113100 Sobic002G006900 Sobic002G006900 Sobic004G208900--Sobic002G006900 Sobic008G028700 Sobic008G028700 Sobic004G208900--Sobic008G028700 Sobic004G208900--Sobic003G280800 Sobic009G126400 Sobic009G126400 Sobic004G208900--Sobic009G126400 Sobic007G000100 Sobic007G000100 Sobic001G511500--Sobic007G000100 Sobic001G511500--Sobic006G209850 Sobic001G511500--Sobic006G128900 Sobic003G119000 Sobic003G119000 Sobic001G511500--Sobic003G119000 Sobic004G031700 Sobic004G031700 Sobic001G511500--Sobic004G031700 Sobic001G306900 Sobic001G306900 Sobic001G511500--Sobic001G306900 Sobic003G445400 Sobic003G445400 Sobic001G511500--Sobic003G445400 Sobic003G307000 Sobic003G307000 Sobic001G511500--Sobic003G307000 Sobic006G032400 Sobic006G032400 Sobic001G511500--Sobic006G032400 Sobic008G015500--Sobic001G274200 Sobic008G015500--Sobic002G154551 Sobic008G015500--Sobic002G243900 Sobic007G161000 Sobic007G161000 Sobic008G015500--Sobic007G161000 Sobic008G015500--Sobic004G208900 Sobic001G318432 Sobic001G318432 Sobic008G015500--Sobic001G318432 Sobic001G420200 Sobic001G420200 Sobic008G015500--Sobic001G420200 Sobic008G015500--Sobic003G280800 Sobic002G404700 Sobic002G404700 Sobic008G015500--Sobic002G404700 Sobic010G277500--Sobic004G208900 Sobic010G277500--Sobic006G209850 Sobic007G065400 Sobic007G065400 Sobic010G277500--Sobic007G065400 Sobic009G260500 Sobic009G260500 Sobic010G277500--Sobic009G260500 Sobic010G277500--Sobic003G280800 Sobic004G009600 Sobic004G009600 Sobic010G277500--Sobic004G009600 Sobic010G277500--Sobic008G028700 Sobic004G258700 Sobic004G258700 Sobic010G277500--Sobic004G258700 Sobic006G216800 Sobic006G216800 Sobic010G277500--Sobic006G216800 Sobic002G053000--Sobic008G024600 Sobic002G053000--Sobic003G280800 Sobic002G053000--Sobic006G209850 Sobic002G053000--Sobic006G128900 Sobic009G210500 Sobic009G210500 Sobic002G053000--Sobic009G210500 Sobic002G053000--Sobic010G129200 Sobic002G053000--Sobic003G445400 Sobic007G167500 Sobic007G167500 Sobic002G053000--Sobic007G167500 Sobic005G045300 Sobic005G045300 Sobic002G053000--Sobic005G045300 Sobic003G268300 Sobic003G268300 Sobic003G422300--Sobic003G268300 Sobic002G248400 Sobic002G248400 Sobic003G422300--Sobic002G248400 Sobic003G422300--Sobic006G128900 Sobic001G094000 Sobic001G094000 Sobic003G422300--Sobic001G094000 Sobic002G157000 Sobic002G157000 Sobic003G422300--Sobic002G157000 Sobic001G090400 Sobic001G090400 Sobic003G422300--Sobic001G090400 Sobic006G060100 Sobic006G060100 Sobic003G422300--Sobic006G060100 Sobic003G422300--Sobic001G511500 Sobic008G078100 Sobic008G078100 Sobic003G422300--Sobic008G078100 Sobic002G309600 Sobic002G309600 Sobic003G280800--Sobic002G309600 Sobic001G071400 Sobic001G071400 Sobic003G280800--Sobic001G071400 Sobic002G134200 Sobic002G134200 Sobic003G280800--Sobic002G134200 Sobic003G280800--Sobic006G209850 Sobic003G280800--Sobic003G119000 Sobic001G474600 Sobic001G474600 Sobic003G280800--Sobic001G474600 Sobic007G117400 Sobic007G117400 Sobic003G280800--Sobic007G117400 Sobic003G280800--Sobic006G216800 Sobic003G372700 Sobic003G372700 Sobic003G280800--Sobic003G372700 Sobic001G274200--Sobic001G420200 Sobic007G096600 Sobic007G096600 Sobic001G274200--Sobic007G096600 Sobic001G274200--Sobic003G268300 Sobic008G173900 Sobic008G173900 Sobic001G274200--Sobic008G173900 Sobic002G144933 Sobic002G144933 Sobic001G274200--Sobic002G144933 Sobic001G133466 Sobic001G133466 Sobic001G274200--Sobic001G133466 Sobic007G037900 Sobic007G037900 Sobic001G274200--Sobic007G037900 Sobic001G274200--Sobic002G243900 Sobic010G123901 Sobic010G123901 Sobic001G274200--Sobic010G123901
Octagon: transcription factors


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