Gene annotation
Transcriptome id Sobic.001G124000.3,Sobic.001G124000.4,Sobic.001G124000.1,Sobic.001G124000.2
Synonym Sb01g010910
Functional annotation pinin/SDK/memA protein, putative, expressed
UniProt A0A1Z5S5C9 , C5WNT6 , A0A1Z5S5D9
Pfam PF04696
Panther DB PTHR12707
NCBI CDD KOG3756; Pinin (desmosome-associated protein)
KEGG Orthology K13114; pinin
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G15200 : protein-protein interaction regulator family protein
RAP-DB (Rice) LOC_Os03g49520.2,LOC_Os03g49520.1 : pinin/SDK/memA protein, putative, expressed
MaizeGDB (Corn) Zm00025a007752 , Zm00025a017050
Brachypodium KQK13537
Barley HORVU4Hr1G006320.19 , HORVU4Hr1G006320.18 , HORVU4Hr1G006320.11 , HORVU4Hr1G006320.10 , HORVU4Hr1G006320.13 , HORVU4Hr1G006320.12 , HORVU4Hr1G006320.15 , HORVU4Hr1G006320.14 , HORVU4Hr1G006320.17 , HORVU4Hr1G006320.16 , HORVU4Hr1G006320.9 , HORVU4Hr1G006320.8 , HORVU4Hr1G006320.5 , HORVU4Hr1G006320.4 , HORVU4Hr1G006320.7 , HORVU4Hr1G006320.6 , HORVU4Hr1G006320.1 , HORVU4Hr1G006320.3 , HORVU4Hr1G006320.2 , HORVU4Hr1G006320.24 , HORVU4Hr1G006320.25 , HORVU4Hr1G006320.26 , HORVU4Hr1G006320.27 , HORVU4Hr1G006320.20 , HORVU4Hr1G006320.21 , HORVU4Hr1G006320.22 , HORVU4Hr1G006320.23
Wheat TraesCS4D02G037700 , TraesCS4D02G037700 , TraesCS4A02G273600 , TraesCS4A02G273600 , TraesCS4A02G273600 , TraesCS4B02G040100
Populus -


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cDNA sequences
Sobic.001G124000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G024400 ZOS5-03 - C2H2 zinc finger protein, expressed K09191: general transcription factor IIIA
2 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
3 Sobic.008G113100 protein binding protein, putative, expressed -
4 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -
5 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
6 Sobic.007G117400 expressed protein -
7 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
8 Sobic.010G277500 expressed protein -
9 Sobic.008G011100 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed -
10 Sobic.001G274200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
11 Sobic.004G264300 nuclear matrix constituent protein 1-like, putative, expressed -
12 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
13 Sobic.002G031400 OsFBL39 - F-box domain and LRR containing protein, expressed -
14 Sobic.009G210500 expressed protein -
15 Sobic.002G144933 - -
16 Sobic.007G054400 FAR1 family protein, expressed -
17 Sobic.004G145500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
18 Sobic.001G420200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
19 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
20 Sobic.002G320500 MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic001G124000 Sobic001G124000 Sobic009G024400 Sobic009G024400 Sobic001G124000--Sobic009G024400 Sobic004G039200 Sobic004G039200 Sobic001G124000--Sobic004G039200 Sobic008G113100 Sobic008G113100 Sobic001G124000--Sobic008G113100 Sobic004G208900 Sobic004G208900 Sobic001G124000--Sobic004G208900 Sobic001G227200 Sobic001G227200 Sobic001G124000--Sobic001G227200 Sobic007G117400 Sobic007G117400 Sobic001G124000--Sobic007G117400 Sobic009G065100 Sobic009G065100 Sobic001G124000--Sobic009G065100 Sobic010G277500 Sobic010G277500 Sobic001G124000--Sobic010G277500 Sobic008G011100 Sobic008G011100 Sobic001G124000--Sobic008G011100 Sobic009G024400--Sobic001G124000 Sobic009G024400--Sobic001G227200 Sobic007G159900 Sobic007G159900 Sobic009G024400--Sobic007G159900 Sobic003G266001 Sobic003G266001 Sobic009G024400--Sobic003G266001 Sobic004G140600 Sobic004G140600 Sobic009G024400--Sobic004G140600 Sobic005G106500 Sobic005G106500 Sobic009G024400--Sobic005G106500 Sobic009G132700 Sobic009G132700 Sobic009G024400--Sobic009G132700 Sobic009G024400--Sobic008G113100 Sobic003G170900 Sobic003G170900 Sobic009G024400--Sobic003G170900 Sobic009G024000 Sobic009G024000 Sobic004G039200--Sobic009G024000 Sobic003G101500 Sobic003G101500 Sobic004G039200--Sobic003G101500 Sobic007G161000 Sobic007G161000 Sobic004G039200--Sobic007G161000 Sobic007G065400 Sobic007G065400 Sobic004G039200--Sobic007G065400 Sobic004G039200--Sobic008G113100 Sobic008G028700 Sobic008G028700 Sobic004G039200--Sobic008G028700 Sobic008G009700 Sobic008G009700 Sobic004G039200--Sobic008G009700 Sobic004G039200--Sobic007G117400 Sobic007G054400 Sobic007G054400 Sobic004G039200--Sobic007G054400 Sobic004G258700 Sobic004G258700 Sobic008G113100--Sobic004G258700 Sobic008G113100--Sobic008G028700 Sobic005G064000 Sobic005G064000 Sobic008G113100--Sobic005G064000 Sobic008G113100--Sobic007G065400 Sobic001G456900 Sobic001G456900 Sobic008G113100--Sobic001G456900 Sobic008G113100--Sobic009G024000 Sobic009G040600 Sobic009G040600 Sobic008G113100--Sobic009G040600 Sobic008G113100--Sobic004G208900 Sobic008G113100--Sobic004G039200 Sobic004G208900--Sobic009G040600 Sobic004G208900--Sobic010G277500 Sobic003G052200 Sobic003G052200 Sobic004G208900--Sobic003G052200 Sobic010G139000 Sobic010G139000 Sobic004G208900--Sobic010G139000 Sobic004G208900--Sobic008G113100 Sobic002G006900 Sobic002G006900 Sobic004G208900--Sobic002G006900 Sobic004G208900--Sobic008G028700 Sobic003G280800 Sobic003G280800 Sobic004G208900--Sobic003G280800 Sobic009G126400 Sobic009G126400 Sobic004G208900--Sobic009G126400 Sobic001G227200--Sobic004G140600 Sobic009G177500 Sobic009G177500 Sobic001G227200--Sobic009G177500 Sobic001G227200--Sobic005G106500 Sobic001G227200--Sobic010G139000 Sobic002G343901 Sobic002G343901 Sobic001G227200--Sobic002G343901 Sobic001G227200--Sobic004G258700 Sobic001G311500 Sobic001G311500 Sobic001G227200--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic001G227200--Sobic001G036050 Sobic001G227200--Sobic001G456900 Sobic002G309600 Sobic002G309600 Sobic007G117400--Sobic002G309600 Sobic001G241200 Sobic001G241200 Sobic007G117400--Sobic001G241200 Sobic004G065100 Sobic004G065100 Sobic007G117400--Sobic004G065100 Sobic007G117400--Sobic007G161000 Sobic007G117400--Sobic003G280800 Sobic004G009600 Sobic004G009600 Sobic007G117400--Sobic004G009600 Sobic001G154900 Sobic001G154900 Sobic007G117400--Sobic001G154900 Sobic007G117400--Sobic009G040600 Sobic005G008800 Sobic005G008800 Sobic007G117400--Sobic005G008800 Sobic002G320500 Sobic002G320500 Sobic009G065100--Sobic002G320500 Sobic002G157000 Sobic002G157000 Sobic009G065100--Sobic002G157000 Sobic008G173900 Sobic008G173900 Sobic009G065100--Sobic008G173900 Sobic009G215800 Sobic009G215800 Sobic009G065100--Sobic009G215800 Sobic004G084300 Sobic004G084300 Sobic009G065100--Sobic004G084300 Sobic002G144933 Sobic002G144933 Sobic009G065100--Sobic002G144933 Sobic002G309800 Sobic002G309800 Sobic009G065100--Sobic002G309800 Sobic001G107500 Sobic001G107500 Sobic009G065100--Sobic001G107500 Sobic003G197800 Sobic003G197800 Sobic009G065100--Sobic003G197800 Sobic010G277500--Sobic004G208900 Sobic006G209850 Sobic006G209850 Sobic010G277500--Sobic006G209850 Sobic010G277500--Sobic007G065400 Sobic009G260500 Sobic009G260500 Sobic010G277500--Sobic009G260500 Sobic010G277500--Sobic003G280800 Sobic010G277500--Sobic004G009600 Sobic010G277500--Sobic008G028700 Sobic010G277500--Sobic004G258700 Sobic006G216800 Sobic006G216800 Sobic010G277500--Sobic006G216800 Sobic001G219600 Sobic001G219600 Sobic008G011100--Sobic001G219600 Sobic008G011100--Sobic004G039200 Sobic004G087600 Sobic004G087600 Sobic008G011100--Sobic004G087600 Sobic002G031400 Sobic002G031400 Sobic008G011100--Sobic002G031400 Sobic008G011100--Sobic009G260500 Sobic004G018300 Sobic004G018300 Sobic008G011100--Sobic004G018300 Sobic001G167200 Sobic001G167200 Sobic008G011100--Sobic001G167200 Sobic008G011100--Sobic009G065100 Sobic008G011100--Sobic001G311500
Octagon: transcription factors


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