Gene annotation
Transcriptome id Sobic.004G264300.1
Synonym LINC1, Sb04g030240
Functional annotation nuclear matrix constituent protein 1-like, putative, expressed
UniProt A0A194YRT7
Pfam -
Panther DB PTHR31908 PTHR31908:SF3
NCBI CDD KOG0978; E3 ubiquitin ligase involved in syntaxin degradation KOG4593Mitotic checkpoint protein MAD1
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G67230 : little nuclei1
RAP-DB (Rice) LOC_Os02g48010.1 : nuclear matrix constituent protein 1-like, putative, expressed
MaizeGDB (Corn) Zm00025a032490
Brachypodium KQK00977
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G293200 plus-3 domain containing protein, expressed -
2 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
3 Sobic.007G117400 expressed protein -
4 Sobic.006G052300 dnaJ domain containing protein, expressed -
5 Sobic.004G145500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
6 Sobic.007G054400 FAR1 family protein, expressed -
7 Sobic.009G024000 nuclear factor related to kappa-B-binding protein, related, putative, expressed K11671: NFRKB, nuclear factor related to kappa-B-binding protein
8 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
9 Sobic.001G124000 pinin/SDK/memA protein, putative, expressed K13114: pinin
10 Sobic.005G128400 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
11 Sobic.003G101500 dnaJ domain containing protein, expressed -
12 Sobic.003G241800 - -
13 Sobic.008G100100 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
14 Sobic.001G253200 mandelonitrile lyase, putative, expressed -
15 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
16 Sobic.006G220000 bromodomain containing protein, expressed -
17 Sobic.009G138800 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
18 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
19 Sobic.009G166100 PWWP domain containing protein, expressed -
20 Sobic.001G111600 expressed protein -


Gene co-expression network
sample Sobic004G264300 Sobic004G264300 Sobic003G293200 Sobic003G293200 Sobic004G264300--Sobic003G293200 Sobic004G039200 Sobic004G039200 Sobic004G264300--Sobic004G039200 Sobic007G117400 Sobic007G117400 Sobic004G264300--Sobic007G117400 Sobic006G052300 Sobic006G052300 Sobic004G264300--Sobic006G052300 Sobic004G145500 Sobic004G145500 Sobic004G264300--Sobic004G145500 Sobic007G054400 Sobic007G054400 Sobic004G264300--Sobic007G054400 Sobic009G024000 Sobic009G024000 Sobic004G264300--Sobic009G024000 Sobic004G009600 Sobic004G009600 Sobic004G264300--Sobic004G009600 Sobic001G124000 Sobic001G124000 Sobic004G264300--Sobic001G124000 Sobic010G001100 Sobic010G001100 Sobic003G293200--Sobic010G001100 Sobic009G166100 Sobic009G166100 Sobic003G293200--Sobic009G166100 Sobic005G128400 Sobic005G128400 Sobic003G293200--Sobic005G128400 Sobic003G293200--Sobic004G009600 Sobic010G065300 Sobic010G065300 Sobic003G293200--Sobic010G065300 Sobic003G293200--Sobic004G264300 Sobic007G031600 Sobic007G031600 Sobic003G293200--Sobic007G031600 Sobic003G293200--Sobic007G117400 Sobic001G111600 Sobic001G111600 Sobic003G293200--Sobic001G111600 Sobic004G039200--Sobic009G024000 Sobic003G101500 Sobic003G101500 Sobic004G039200--Sobic003G101500 Sobic007G161000 Sobic007G161000 Sobic004G039200--Sobic007G161000 Sobic007G065400 Sobic007G065400 Sobic004G039200--Sobic007G065400 Sobic008G113100 Sobic008G113100 Sobic004G039200--Sobic008G113100 Sobic008G028700 Sobic008G028700 Sobic004G039200--Sobic008G028700 Sobic008G009700 Sobic008G009700 Sobic004G039200--Sobic008G009700 Sobic004G039200--Sobic007G117400 Sobic004G039200--Sobic007G054400 Sobic002G309600 Sobic002G309600 Sobic007G117400--Sobic002G309600 Sobic001G241200 Sobic001G241200 Sobic007G117400--Sobic001G241200 Sobic004G065100 Sobic004G065100 Sobic007G117400--Sobic004G065100 Sobic007G117400--Sobic007G161000 Sobic003G280800 Sobic003G280800 Sobic007G117400--Sobic003G280800 Sobic007G117400--Sobic004G009600 Sobic001G154900 Sobic001G154900 Sobic007G117400--Sobic001G154900 Sobic009G040600 Sobic009G040600 Sobic007G117400--Sobic009G040600 Sobic005G008800 Sobic005G008800 Sobic007G117400--Sobic005G008800 Sobic006G052300--Sobic004G264300 Sobic006G052300--Sobic004G009600 Sobic006G220000 Sobic006G220000 Sobic006G052300--Sobic006G220000 Sobic006G052300--Sobic007G054400 Sobic004G096500 Sobic004G096500 Sobic006G052300--Sobic004G096500 Sobic006G210000 Sobic006G210000 Sobic006G052300--Sobic006G210000 Sobic006G052300--Sobic004G145500 Sobic008G100100 Sobic008G100100 Sobic006G052300--Sobic008G100100 Sobic010G277500 Sobic010G277500 Sobic006G052300--Sobic010G277500 Sobic004G145500--Sobic007G065400 Sobic008G173900 Sobic008G173900 Sobic004G145500--Sobic008G173900 Sobic002G144933 Sobic002G144933 Sobic004G145500--Sobic002G144933 Sobic004G145500--Sobic008G009700 Sobic001G306900 Sobic001G306900 Sobic004G145500--Sobic001G306900 Sobic003G200200 Sobic003G200200 Sobic004G145500--Sobic003G200200 Sobic009G210500 Sobic009G210500 Sobic004G145500--Sobic009G210500 Sobic010G136600 Sobic010G136600 Sobic004G145500--Sobic010G136600 Sobic004G145500--Sobic001G241200 Sobic001G253200 Sobic001G253200 Sobic007G054400--Sobic001G253200 Sobic007G054400--Sobic004G039200 Sobic007G054400--Sobic003G101500 Sobic007G054400--Sobic004G145500 Sobic003G197800 Sobic003G197800 Sobic007G054400--Sobic003G197800 Sobic004G258700 Sobic004G258700 Sobic007G054400--Sobic004G258700 Sobic001G433300 Sobic001G433300 Sobic007G054400--Sobic001G433300 Sobic009G065100 Sobic009G065100 Sobic007G054400--Sobic009G065100 Sobic007G054400--Sobic006G052300 Sobic009G024000--Sobic004G039200 Sobic009G024000--Sobic007G161000 Sobic009G024000--Sobic008G028700 Sobic009G024000--Sobic008G113100 Sobic009G024000--Sobic007G117400 Sobic009G024000--Sobic009G040600 Sobic009G024000--Sobic004G009600 Sobic009G024000--Sobic002G309600 Sobic009G024000--Sobic003G101500 Sobic004G009600--Sobic009G040600 Sobic004G009600--Sobic008G028700 Sobic009G260500 Sobic009G260500 Sobic004G009600--Sobic009G260500 Sobic010G279450 Sobic010G279450 Sobic004G009600--Sobic010G279450 Sobic004G009600--Sobic002G309600 Sobic004G009600--Sobic007G117400 Sobic004G009600--Sobic003G293200 Sobic001G363500 Sobic001G363500 Sobic004G009600--Sobic001G363500 Sobic004G009600--Sobic010G277500 Sobic009G024400 Sobic009G024400 Sobic001G124000--Sobic009G024400 Sobic001G124000--Sobic004G039200 Sobic001G124000--Sobic008G113100 Sobic004G208900 Sobic004G208900 Sobic001G124000--Sobic004G208900 Sobic001G227200 Sobic001G227200 Sobic001G124000--Sobic001G227200 Sobic001G124000--Sobic007G117400 Sobic001G124000--Sobic009G065100 Sobic001G124000--Sobic010G277500 Sobic008G011100 Sobic008G011100 Sobic001G124000--Sobic008G011100
Octagon: transcription factors


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