Gene annotation
Transcriptome id Sobic.004G039200.2,Sobic.004G039200.1
Synonym Sb04g003370
Functional annotation splicing factor 3B subunit 1, putative, expressed
UniProt C5XUM0
Pfam PF08920
Panther DB PTHR12097 PTHR12097:SF1
NCBI CDD -
KEGG Orthology K12828; SF3B1, splicing factor 3B subunit 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G64270 : splicing factor, putative
RAP-DB (Rice) LOC_Os02g05310.2 : splicing factor 3B subunit 1, putative, expressed
MaizeGDB (Corn) Zm00025a018966 , Zm00025a034892
Brachypodium KQK21234 , KQJ93293 , KQJ93292 , KQJ93297 , KQJ93296 , KQJ93295 , KQJ93294
Barley HORVU7Hr1G022470.1 , HORVU7Hr1G022470.2 , HORVU6Hr1G020850.3 , HORVU6Hr1G020850.4 , HORVU6Hr1G065110.2 , HORVU6Hr1G065110.1 , HORVU0Hr1G014020.1 , HORVU7Hr1G022470.3 , HORVU6Hr1G020850.1 , HORVU6Hr1G020850.2 , HORVU6Hr1G020850.5 , HORVU0Hr1G009840.1
Wheat -
Populus PNS95320 , PNT57621


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cDNA sequences
Sobic.004G039200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G024000 nuclear factor related to kappa-B-binding protein, related, putative, expressed K11671: NFRKB, nuclear factor related to kappa-B-binding protein
2 Sobic.003G101500 dnaJ domain containing protein, expressed -
3 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
4 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
5 Sobic.008G113100 protein binding protein, putative, expressed -
6 Sobic.008G028700 SET domain containing protein, expressed -
7 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
8 Sobic.007G117400 expressed protein -
9 Sobic.007G054400 FAR1 family protein, expressed -
10 Sobic.004G145500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
11 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
12 Sobic.008G011100 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed -
13 Sobic.002G320500 MYB family transcription factor, putative, expressed -
14 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
15 Sobic.004G258700 PHD-finger family protein, expressed -
16 Sobic.004G264300 nuclear matrix constituent protein 1-like, putative, expressed -
17 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
18 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
19 Sobic.001G253200 mandelonitrile lyase, putative, expressed -
20 Sobic.010G136600 - -


Gene co-expression network
sample Sobic004G039200 Sobic004G039200 Sobic009G024000 Sobic009G024000 Sobic004G039200--Sobic009G024000 Sobic003G101500 Sobic003G101500 Sobic004G039200--Sobic003G101500 Sobic007G161000 Sobic007G161000 Sobic004G039200--Sobic007G161000 Sobic007G065400 Sobic007G065400 Sobic004G039200--Sobic007G065400 Sobic008G113100 Sobic008G113100 Sobic004G039200--Sobic008G113100 Sobic008G028700 Sobic008G028700 Sobic004G039200--Sobic008G028700 Sobic008G009700 Sobic008G009700 Sobic004G039200--Sobic008G009700 Sobic007G117400 Sobic007G117400 Sobic004G039200--Sobic007G117400 Sobic007G054400 Sobic007G054400 Sobic004G039200--Sobic007G054400 Sobic009G024000--Sobic004G039200 Sobic009G024000--Sobic007G161000 Sobic009G024000--Sobic008G028700 Sobic009G024000--Sobic008G113100 Sobic009G024000--Sobic007G117400 Sobic009G040600 Sobic009G040600 Sobic009G024000--Sobic009G040600 Sobic004G009600 Sobic004G009600 Sobic009G024000--Sobic004G009600 Sobic002G309600 Sobic002G309600 Sobic009G024000--Sobic002G309600 Sobic009G024000--Sobic003G101500 Sobic003G101500--Sobic004G039200 Sobic004G258700 Sobic004G258700 Sobic003G101500--Sobic004G258700 Sobic003G101500--Sobic007G161000 Sobic009G260500 Sobic009G260500 Sobic003G101500--Sobic009G260500 Sobic003G101500--Sobic007G054400 Sobic001G456900 Sobic001G456900 Sobic003G101500--Sobic001G456900 Sobic003G101500--Sobic008G113100 Sobic003G101500--Sobic008G028700 Sobic003G101500--Sobic009G024000 Sobic007G161000--Sobic004G039200 Sobic007G161000--Sobic007G117400 Sobic007G161000--Sobic009G024000 Sobic010G139000 Sobic010G139000 Sobic007G161000--Sobic010G139000 Sobic006G182900 Sobic006G182900 Sobic007G161000--Sobic006G182900 Sobic007G161000--Sobic002G309600 Sobic004G314000 Sobic004G314000 Sobic007G161000--Sobic004G314000 Sobic002G134200 Sobic002G134200 Sobic007G161000--Sobic002G134200 Sobic007G161000--Sobic008G028700 Sobic002G006900 Sobic002G006900 Sobic007G065400--Sobic002G006900 Sobic002G191800 Sobic002G191800 Sobic007G065400--Sobic002G191800 Sobic007G065400--Sobic008G009700 Sobic007G065400--Sobic009G040600 Sobic004G145500 Sobic004G145500 Sobic007G065400--Sobic004G145500 Sobic009G210500 Sobic009G210500 Sobic007G065400--Sobic009G210500 Sobic003G119000 Sobic003G119000 Sobic007G065400--Sobic003G119000 Sobic003G372700 Sobic003G372700 Sobic007G065400--Sobic003G372700 Sobic007G065400--Sobic008G028700 Sobic008G113100--Sobic004G258700 Sobic008G113100--Sobic008G028700 Sobic005G064000 Sobic005G064000 Sobic008G113100--Sobic005G064000 Sobic008G113100--Sobic007G065400 Sobic008G113100--Sobic001G456900 Sobic008G113100--Sobic009G024000 Sobic008G113100--Sobic009G040600 Sobic004G208900 Sobic004G208900 Sobic008G113100--Sobic004G208900 Sobic008G113100--Sobic004G039200 Sobic010G279450 Sobic010G279450 Sobic008G028700--Sobic010G279450 Sobic008G028700--Sobic009G040600 Sobic008G028700--Sobic004G009600 Sobic008G028700--Sobic004G258700 Sobic008G028700--Sobic007G065400 Sobic008G028700--Sobic010G139000 Sobic008G028700--Sobic002G006900 Sobic002G145101 Sobic002G145101 Sobic008G028700--Sobic002G145101 Sobic008G028700--Sobic008G113100 Sobic008G009700--Sobic002G309600 Sobic005G008800 Sobic005G008800 Sobic008G009700--Sobic005G008800 Sobic005G112300 Sobic005G112300 Sobic008G009700--Sobic005G112300 Sobic008G009700--Sobic007G065400 Sobic002G071500 Sobic002G071500 Sobic008G009700--Sobic002G071500 Sobic010G002100 Sobic010G002100 Sobic008G009700--Sobic010G002100 Sobic002G153700 Sobic002G153700 Sobic008G009700--Sobic002G153700 Sobic010G065300 Sobic010G065300 Sobic008G009700--Sobic010G065300 Sobic001G241200 Sobic001G241200 Sobic008G009700--Sobic001G241200 Sobic007G117400--Sobic002G309600 Sobic007G117400--Sobic001G241200 Sobic004G065100 Sobic004G065100 Sobic007G117400--Sobic004G065100 Sobic007G117400--Sobic007G161000 Sobic003G280800 Sobic003G280800 Sobic007G117400--Sobic003G280800 Sobic007G117400--Sobic004G009600 Sobic001G154900 Sobic001G154900 Sobic007G117400--Sobic001G154900 Sobic007G117400--Sobic009G040600 Sobic007G117400--Sobic005G008800 Sobic001G253200 Sobic001G253200 Sobic007G054400--Sobic001G253200 Sobic007G054400--Sobic004G039200 Sobic007G054400--Sobic003G101500 Sobic007G054400--Sobic004G145500 Sobic003G197800 Sobic003G197800 Sobic007G054400--Sobic003G197800 Sobic007G054400--Sobic004G258700 Sobic001G433300 Sobic001G433300 Sobic007G054400--Sobic001G433300 Sobic009G065100 Sobic009G065100 Sobic007G054400--Sobic009G065100 Sobic006G052300 Sobic006G052300 Sobic007G054400--Sobic006G052300
Octagon: transcription factors


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