Gene annotation
Transcriptome id Sobic.009G024000.1
Synonym Sb09g002020
Functional annotation nuclear factor related to kappa-B-binding protein, related, putative, expressed
UniProt C5YZ15
Pfam -
Panther DB PTHR13052 PTHR13052:SF0
NCBI CDD KOG1927; R-kappa-B and related transcription factors
KEGG Orthology K11671; NFRKB, nuclear factor related to kappa-B-binding protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G45830 : -
RAP-DB (Rice) LOC_Os05g02680.1 : nuclear factor related to kappa-B-binding protein, related, putative, expressed
MaizeGDB (Corn) Zm00025a038208 , Zm00025a040777
Brachypodium KQK07807
Barley HORVU1Hr1G010800.2 , HORVU1Hr1G010800.3 , HORVU1Hr1G010800.1 , HORVU1Hr1G010800.4
Wheat TraesCS1A02G054300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
2 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
3 Sobic.008G028700 SET domain containing protein, expressed -
4 Sobic.008G113100 protein binding protein, putative, expressed -
5 Sobic.007G117400 expressed protein -
6 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
7 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
8 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
9 Sobic.003G101500 dnaJ domain containing protein, expressed -
10 Sobic.004G258700 PHD-finger family protein, expressed -
11 Sobic.003G052200 G-patch domain containing protein, expressed -
12 Sobic.001G154900 "GL3.1/qGL3(Ortholog in rice:Qi et al., 2012, Zhang et al., 2012)"(PubMedID : 31659834)@serine/threonine protein phosphatase, putative, expressed -
13 Sobic.004G314000 expressed protein -
14 Sobic.002G405800 PHD-finger family protein, expressed -
15 Sobic.010G279450 - K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
16 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
17 Sobic.009G256300 DNA binding protein, putative, expressed -
18 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
19 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
20 Sobic.001G365900 PWWP domain containing protein, expressed -


Gene co-expression network
sample Sobic009G024000 Sobic009G024000 Sobic004G039200 Sobic004G039200 Sobic009G024000--Sobic004G039200 Sobic007G161000 Sobic007G161000 Sobic009G024000--Sobic007G161000 Sobic008G028700 Sobic008G028700 Sobic009G024000--Sobic008G028700 Sobic008G113100 Sobic008G113100 Sobic009G024000--Sobic008G113100 Sobic007G117400 Sobic007G117400 Sobic009G024000--Sobic007G117400 Sobic009G040600 Sobic009G040600 Sobic009G024000--Sobic009G040600 Sobic004G009600 Sobic004G009600 Sobic009G024000--Sobic004G009600 Sobic002G309600 Sobic002G309600 Sobic009G024000--Sobic002G309600 Sobic003G101500 Sobic003G101500 Sobic009G024000--Sobic003G101500 Sobic004G039200--Sobic009G024000 Sobic004G039200--Sobic003G101500 Sobic004G039200--Sobic007G161000 Sobic007G065400 Sobic007G065400 Sobic004G039200--Sobic007G065400 Sobic004G039200--Sobic008G113100 Sobic004G039200--Sobic008G028700 Sobic008G009700 Sobic008G009700 Sobic004G039200--Sobic008G009700 Sobic004G039200--Sobic007G117400 Sobic007G054400 Sobic007G054400 Sobic004G039200--Sobic007G054400 Sobic007G161000--Sobic004G039200 Sobic007G161000--Sobic007G117400 Sobic007G161000--Sobic009G024000 Sobic010G139000 Sobic010G139000 Sobic007G161000--Sobic010G139000 Sobic006G182900 Sobic006G182900 Sobic007G161000--Sobic006G182900 Sobic007G161000--Sobic002G309600 Sobic004G314000 Sobic004G314000 Sobic007G161000--Sobic004G314000 Sobic002G134200 Sobic002G134200 Sobic007G161000--Sobic002G134200 Sobic007G161000--Sobic008G028700 Sobic010G279450 Sobic010G279450 Sobic008G028700--Sobic010G279450 Sobic008G028700--Sobic009G040600 Sobic008G028700--Sobic004G009600 Sobic004G258700 Sobic004G258700 Sobic008G028700--Sobic004G258700 Sobic008G028700--Sobic007G065400 Sobic008G028700--Sobic010G139000 Sobic002G006900 Sobic002G006900 Sobic008G028700--Sobic002G006900 Sobic002G145101 Sobic002G145101 Sobic008G028700--Sobic002G145101 Sobic008G028700--Sobic008G113100 Sobic008G113100--Sobic004G258700 Sobic008G113100--Sobic008G028700 Sobic005G064000 Sobic005G064000 Sobic008G113100--Sobic005G064000 Sobic008G113100--Sobic007G065400 Sobic001G456900 Sobic001G456900 Sobic008G113100--Sobic001G456900 Sobic008G113100--Sobic009G024000 Sobic008G113100--Sobic009G040600 Sobic004G208900 Sobic004G208900 Sobic008G113100--Sobic004G208900 Sobic008G113100--Sobic004G039200 Sobic007G117400--Sobic002G309600 Sobic001G241200 Sobic001G241200 Sobic007G117400--Sobic001G241200 Sobic004G065100 Sobic004G065100 Sobic007G117400--Sobic004G065100 Sobic007G117400--Sobic007G161000 Sobic003G280800 Sobic003G280800 Sobic007G117400--Sobic003G280800 Sobic007G117400--Sobic004G009600 Sobic001G154900 Sobic001G154900 Sobic007G117400--Sobic001G154900 Sobic007G117400--Sobic009G040600 Sobic005G008800 Sobic005G008800 Sobic007G117400--Sobic005G008800 Sobic009G040600--Sobic004G009600 Sobic009G040600--Sobic002G006900 Sobic008G047800 Sobic008G047800 Sobic009G040600--Sobic008G047800 Sobic009G040600--Sobic004G208900 Sobic005G112300 Sobic005G112300 Sobic009G040600--Sobic005G112300 Sobic009G040600--Sobic007G065400 Sobic009G040600--Sobic008G028700 Sobic009G040600--Sobic002G309600 Sobic009G126400 Sobic009G126400 Sobic009G040600--Sobic009G126400 Sobic004G009600--Sobic009G040600 Sobic004G009600--Sobic008G028700 Sobic009G260500 Sobic009G260500 Sobic004G009600--Sobic009G260500 Sobic004G009600--Sobic010G279450 Sobic004G009600--Sobic002G309600 Sobic004G009600--Sobic007G117400 Sobic003G293200 Sobic003G293200 Sobic004G009600--Sobic003G293200 Sobic001G363500 Sobic001G363500 Sobic004G009600--Sobic001G363500 Sobic010G277500 Sobic010G277500 Sobic004G009600--Sobic010G277500 Sobic002G309600--Sobic003G280800 Sobic002G309600--Sobic002G134200 Sobic002G309600--Sobic007G117400 Sobic002G309600--Sobic008G009700 Sobic001G071400 Sobic001G071400 Sobic002G309600--Sobic001G071400 Sobic002G309600--Sobic005G112300 Sobic002G309600--Sobic004G065100 Sobic002G309600--Sobic001G154900 Sobic002G309600--Sobic002G006900 Sobic003G101500--Sobic004G039200 Sobic003G101500--Sobic004G258700 Sobic003G101500--Sobic007G161000 Sobic003G101500--Sobic009G260500 Sobic003G101500--Sobic007G054400 Sobic003G101500--Sobic001G456900 Sobic003G101500--Sobic008G113100 Sobic003G101500--Sobic008G028700 Sobic003G101500--Sobic009G024000
Octagon: transcription factors


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