Gene annotation
Transcriptome id Sobic.001G365900.1
Synonym Sb01g034875
Functional annotation PWWP domain containing protein, expressed
UniProt A0A1B6QN43
Pfam PF04818 PF12243 PF00855
Panther DB PTHR12550 PTHR12550:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G63070 : Tudor/PWWP/MBT domain-containing protein
RAP-DB (Rice) LOC_Os03g24339.1 : PWWP domain containing protein, expressed
MaizeGDB (Corn) Zm00025a052329 , Zm00025a042310 , Zm00025a043017 , Zm00025a031536 , Zm00025a002552
Brachypodium KQK21610 , PNT77386 , KQK14901 , PNT77387 , PNT77385 , PNT77384
Barley -
Wheat TraesCS2A02G135600 , TraesCS2B02G159500 , TraesCS2D02G138100 , TraesCS2D02G138100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
2 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -
3 Sobic.001G289600 BAH domain containing protein, putative, expressed -
4 Sobic.008G130100 protein kinase family protein, putative, expressed -
5 Sobic.002G411600 CW-type Zinc Finger, putative, expressed -
6 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
7 Sobic.009G191000 MATH domain containing protein, expressed -
8 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
9 Sobic.001G540400 expressed protein -
10 Sobic.009G053900 HECT-domain domain containing protein, expressed K10589: ubiquitin-protein ligase E3 C
11 Sobic.010G010700 PHD-finger family protein, expressed -
12 Sobic.009G026500 ATSIZ1/SIZ1, putative, expressed -
13 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
14 Sobic.003G313500 MATH domain containing protein, expressed -
15 Sobic.003G388100 expressed protein -
16 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
17 Sobic.003G422500 expressed protein -
18 Sobic.003G389200 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1
19 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
20 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16


Gene co-expression network
sample Sobic001G365900 Sobic001G365900 Sobic010G206900 Sobic010G206900 Sobic001G365900--Sobic010G206900 Sobic001G534700 Sobic001G534700 Sobic001G365900--Sobic001G534700 Sobic001G289600 Sobic001G289600 Sobic001G365900--Sobic001G289600 Sobic008G130100 Sobic008G130100 Sobic001G365900--Sobic008G130100 Sobic002G411600 Sobic002G411600 Sobic001G365900--Sobic002G411600 Sobic002G008900 Sobic002G008900 Sobic001G365900--Sobic002G008900 Sobic009G191000 Sobic009G191000 Sobic001G365900--Sobic009G191000 Sobic004G034900 Sobic004G034900 Sobic001G365900--Sobic004G034900 Sobic001G540400 Sobic001G540400 Sobic001G365900--Sobic001G540400 Sobic010G010700 Sobic010G010700 Sobic010G206900--Sobic010G010700 Sobic010G206900--Sobic001G365900 Sobic010G206900--Sobic004G034900 Sobic010G206900--Sobic001G534700 Sobic010G247800 Sobic010G247800 Sobic010G206900--Sobic010G247800 Sobic010G206900--Sobic002G411600 Sobic008G001200 Sobic008G001200 Sobic010G206900--Sobic008G001200 Sobic003G196300 Sobic003G196300 Sobic010G206900--Sobic003G196300 Sobic009G165700 Sobic009G165700 Sobic010G206900--Sobic009G165700 Sobic001G534700--Sobic010G206900 Sobic001G534700--Sobic001G365900 Sobic001G534700--Sobic002G411600 Sobic003G316500 Sobic003G316500 Sobic001G534700--Sobic003G316500 Sobic001G534700--Sobic009G165700 Sobic001G534700--Sobic004G034900 Sobic001G534700--Sobic002G008900 Sobic003G422500 Sobic003G422500 Sobic001G534700--Sobic003G422500 Sobic001G534700--Sobic008G001200 Sobic001G289600--Sobic001G540400 Sobic001G289600--Sobic004G034900 Sobic001G289800 Sobic001G289800 Sobic001G289600--Sobic001G289800 Sobic001G289600--Sobic003G422500 Sobic001G289600--Sobic001G365900 Sobic001G289600--Sobic009G191000 Sobic005G008800 Sobic005G008800 Sobic001G289600--Sobic005G008800 Sobic007G105100 Sobic007G105100 Sobic001G289600--Sobic007G105100 Sobic001G289600--Sobic010G010700 Sobic008G130100--Sobic001G365900 Sobic001G454500 Sobic001G454500 Sobic008G130100--Sobic001G454500 Sobic006G133900 Sobic006G133900 Sobic008G130100--Sobic006G133900 Sobic008G130100--Sobic010G010700 Sobic003G155100 Sobic003G155100 Sobic008G130100--Sobic003G155100 Sobic008G130100--Sobic004G034900 Sobic002G346200 Sobic002G346200 Sobic008G130100--Sobic002G346200 Sobic008G130100--Sobic010G206900 Sobic007G198300 Sobic007G198300 Sobic008G130100--Sobic007G198300 Sobic002G411600--Sobic009G191000 Sobic002G411600--Sobic003G422500 Sobic002G411600--Sobic010G206900 Sobic002G411600--Sobic002G008900 Sobic002G411600--Sobic004G034900 Sobic004G174200 Sobic004G174200 Sobic002G411600--Sobic004G174200 Sobic002G411600--Sobic010G247800 Sobic002G411600--Sobic001G534700 Sobic003G101400 Sobic003G101400 Sobic002G411600--Sobic003G101400 Sobic002G008900--Sobic009G191000 Sobic002G008900--Sobic002G411600 Sobic007G062800 Sobic007G062800 Sobic002G008900--Sobic007G062800 Sobic002G008900--Sobic003G422500 Sobic005G001000 Sobic005G001000 Sobic002G008900--Sobic005G001000 Sobic002G008900--Sobic010G010700 Sobic002G008900--Sobic004G034900 Sobic002G008900--Sobic010G206900 Sobic009G053900 Sobic009G053900 Sobic002G008900--Sobic009G053900 Sobic009G191000--Sobic002G008900 Sobic009G191000--Sobic002G411600 Sobic009G191000--Sobic003G422500 Sobic009G191000--Sobic009G053900 Sobic009G191000--Sobic001G289600 Sobic003G313500 Sobic003G313500 Sobic009G191000--Sobic003G313500 Sobic009G191000--Sobic010G247800 Sobic009G191000--Sobic004G034900 Sobic009G191000--Sobic001G365900 Sobic004G034900--Sobic001G289600 Sobic004G034900--Sobic010G206900 Sobic004G034900--Sobic010G010700 Sobic004G034900--Sobic002G411600 Sobic004G034900--Sobic001G540400 Sobic004G034900--Sobic003G422500 Sobic004G276400 Sobic004G276400 Sobic004G034900--Sobic004G276400 Sobic004G034900--Sobic002G008900 Sobic004G034900--Sobic007G062800 Sobic001G540400--Sobic001G289600 Sobic003G408600 Sobic003G408600 Sobic001G540400--Sobic003G408600 Sobic001G540400--Sobic007G062800 Sobic001G540400--Sobic005G008800 Sobic001G540400--Sobic004G034900 Sobic005G112300 Sobic005G112300 Sobic001G540400--Sobic005G112300 Sobic001G540400--Sobic003G422500 Sobic002G397500 Sobic002G397500 Sobic001G540400--Sobic002G397500 Sobic010G112100 Sobic010G112100 Sobic001G540400--Sobic010G112100
Octagon: transcription factors


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