Gene annotation
Transcriptome id Sobic.001G534700.1
Synonym
Functional annotation plus-3 domain containing protein, putative, expressed
UniProt C5X129
Pfam PF02213 PF02201 PF03126
Panther DB PTHR22884 PTHR22884:SF326
NCBI CDD KOG1946; RNA polymerase I transcription factor UAF
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G16485 : nucleic acid binding;zinc ion binding;DNA binding
RAP-DB (Rice) LOC_Os10g36810.1 : plus-3 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a053532 , Zm00025a017436 , Zm00025a000194 , Zm00025a034008
Brachypodium KQK24038
Barley HORVU4Hr1G089290.10 , HORVU4Hr1G089290.11 , HORVU4Hr1G089320.1 , HORVU4Hr1G089290.8 , HORVU4Hr1G089290.9 , HORVU4Hr1G089290.4 , HORVU4Hr1G089290.5 , HORVU4Hr1G089290.6 , HORVU4Hr1G089290.7 , HORVU4Hr1G089290.1 , HORVU4Hr1G089290.2 , HORVU4Hr1G089290.3
Wheat TraesCS5A02G557400 , TraesCS4B02G395800 , TraesCS4B02G395800 , TraesCSU02G031300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
2 Sobic.001G365900 PWWP domain containing protein, expressed -
3 Sobic.002G411600 CW-type Zinc Finger, putative, expressed -
4 Sobic.003G316500 expressed protein -
5 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -
6 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
7 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
8 Sobic.003G422500 expressed protein -
9 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
10 Sobic.009G053900 HECT-domain domain containing protein, expressed K10589: ubiquitin-protein ligase E3 C
11 Sobic.003G196300 DNA binding protein, putative, expressed -
12 Sobic.009G191000 MATH domain containing protein, expressed -
13 Sobic.001G540400 expressed protein -
14 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
15 Sobic.003G313500 MATH domain containing protein, expressed -
16 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
17 Sobic.003G101400 transcriptional repressor, putative, expressed K11644: paired amphipathic helix protein Sin3a
18 Sobic.007G062800 SET domain containing protein, expressed -
19 Sobic.001G289600 BAH domain containing protein, putative, expressed -
20 Sobic.001G289800 BAH domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G534700 Sobic001G534700 Sobic010G206900 Sobic010G206900 Sobic001G534700--Sobic010G206900 Sobic001G365900 Sobic001G365900 Sobic001G534700--Sobic001G365900 Sobic002G411600 Sobic002G411600 Sobic001G534700--Sobic002G411600 Sobic003G316500 Sobic003G316500 Sobic001G534700--Sobic003G316500 Sobic009G165700 Sobic009G165700 Sobic001G534700--Sobic009G165700 Sobic004G034900 Sobic004G034900 Sobic001G534700--Sobic004G034900 Sobic002G008900 Sobic002G008900 Sobic001G534700--Sobic002G008900 Sobic003G422500 Sobic003G422500 Sobic001G534700--Sobic003G422500 Sobic008G001200 Sobic008G001200 Sobic001G534700--Sobic008G001200 Sobic010G010700 Sobic010G010700 Sobic010G206900--Sobic010G010700 Sobic010G206900--Sobic001G365900 Sobic010G206900--Sobic004G034900 Sobic010G206900--Sobic001G534700 Sobic010G247800 Sobic010G247800 Sobic010G206900--Sobic010G247800 Sobic010G206900--Sobic002G411600 Sobic010G206900--Sobic008G001200 Sobic003G196300 Sobic003G196300 Sobic010G206900--Sobic003G196300 Sobic010G206900--Sobic009G165700 Sobic001G365900--Sobic010G206900 Sobic001G365900--Sobic001G534700 Sobic001G289600 Sobic001G289600 Sobic001G365900--Sobic001G289600 Sobic008G130100 Sobic008G130100 Sobic001G365900--Sobic008G130100 Sobic001G365900--Sobic002G411600 Sobic001G365900--Sobic002G008900 Sobic009G191000 Sobic009G191000 Sobic001G365900--Sobic009G191000 Sobic001G365900--Sobic004G034900 Sobic001G540400 Sobic001G540400 Sobic001G365900--Sobic001G540400 Sobic002G411600--Sobic009G191000 Sobic002G411600--Sobic003G422500 Sobic002G411600--Sobic010G206900 Sobic002G411600--Sobic002G008900 Sobic002G411600--Sobic004G034900 Sobic004G174200 Sobic004G174200 Sobic002G411600--Sobic004G174200 Sobic002G411600--Sobic010G247800 Sobic002G411600--Sobic001G534700 Sobic003G101400 Sobic003G101400 Sobic002G411600--Sobic003G101400 Sobic003G316500--Sobic001G534700 Sobic009G053900 Sobic009G053900 Sobic003G316500--Sobic009G053900 Sobic009G074400 Sobic009G074400 Sobic003G316500--Sobic009G074400 Sobic001G389100 Sobic001G389100 Sobic003G316500--Sobic001G389100 Sobic010G147100 Sobic010G147100 Sobic003G316500--Sobic010G147100 Sobic003G316500--Sobic001G365900 Sobic003G316500--Sobic009G165700 Sobic001G451400 Sobic001G451400 Sobic003G316500--Sobic001G451400 Sobic003G316500--Sobic010G206900 Sobic009G165700--Sobic003G422500 Sobic009G165700--Sobic010G247800 Sobic009G165700--Sobic010G206900 Sobic003G166750 Sobic003G166750 Sobic009G165700--Sobic003G166750 Sobic008G087866 Sobic008G087866 Sobic009G165700--Sobic008G087866 Sobic009G165700--Sobic001G451400 Sobic003G170900 Sobic003G170900 Sobic009G165700--Sobic003G170900 Sobic009G165700--Sobic001G534700 Sobic009G165700--Sobic008G001200 Sobic004G034900--Sobic001G289600 Sobic004G034900--Sobic010G206900 Sobic004G034900--Sobic010G010700 Sobic004G034900--Sobic002G411600 Sobic004G034900--Sobic001G540400 Sobic004G034900--Sobic003G422500 Sobic004G276400 Sobic004G276400 Sobic004G034900--Sobic004G276400 Sobic004G034900--Sobic002G008900 Sobic007G062800 Sobic007G062800 Sobic004G034900--Sobic007G062800 Sobic002G008900--Sobic009G191000 Sobic002G008900--Sobic002G411600 Sobic002G008900--Sobic007G062800 Sobic002G008900--Sobic003G422500 Sobic005G001000 Sobic005G001000 Sobic002G008900--Sobic005G001000 Sobic002G008900--Sobic010G010700 Sobic002G008900--Sobic004G034900 Sobic002G008900--Sobic010G206900 Sobic002G008900--Sobic009G053900 Sobic003G422500--Sobic002G411600 Sobic003G422500--Sobic009G191000 Sobic003G422500--Sobic001G289600 Sobic003G422500--Sobic009G165700 Sobic003G422500--Sobic002G008900 Sobic003G422500--Sobic004G034900 Sobic001G289800 Sobic001G289800 Sobic003G422500--Sobic001G289800 Sobic003G422500--Sobic001G540400 Sobic008G132600 Sobic008G132600 Sobic003G422500--Sobic008G132600 Sobic003G155100 Sobic003G155100 Sobic008G001200--Sobic003G155100 Sobic008G001200--Sobic010G206900 Sobic009G256400 Sobic009G256400 Sobic008G001200--Sobic009G256400 Sobic003G205200 Sobic003G205200 Sobic008G001200--Sobic003G205200 Sobic008G001200--Sobic010G010700 Sobic001G194200 Sobic001G194200 Sobic008G001200--Sobic001G194200 Sobic008G001200--Sobic005G001000 Sobic008G001200--Sobic004G276400 Sobic008G001200--Sobic004G174200
Octagon: transcription factors


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