Gene annotation
Transcriptome id Sobic.004G174200.1
Synonym EMB2733, ESP3, Sb04g022460
Functional annotation pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed
UniProt A0A194YRD2
Pfam PF00271 PF04408 PF07717
Panther DB PTHR18934 PTHR18934:SF117
NCBI CDD -
KEGG Orthology K12813; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
Gene Ontology GO:0004386; helicase activity


Orthologs (automatic annotation)
TAIR AT1G32490 : RNA helicase family protein
RAP-DB (Rice) LOC_Os08g24760.1 : ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a030589 , Zm00025a023651
Brachypodium KQK21508
Barley HORVU4Hr1G088270.28 , HORVU4Hr1G088270.29 , HORVU4Hr1G088270.2 , HORVU4Hr1G088270.20 , HORVU4Hr1G088270.21 , HORVU4Hr1G088270.22 , HORVU4Hr1G088270.23 , HORVU4Hr1G088270.24 , HORVU4Hr1G088270.25 , HORVU4Hr1G088270.26 , HORVU4Hr1G088270.27 , HORVU4Hr1G088270.19 , HORVU4Hr1G088270.18 , HORVU4Hr1G088270.15 , HORVU4Hr1G088270.14 , HORVU4Hr1G088270.17 , HORVU4Hr1G088270.16 , HORVU4Hr1G088270.11 , HORVU4Hr1G088270.10 , HORVU4Hr1G088270.13 , HORVU4Hr1G088270.12 , HORVU4Hr1G088270.9 , HORVU4Hr1G088270.8 , HORVU4Hr1G088270.1 , HORVU4Hr1G088270.3 , HORVU4Hr1G088270.5 , HORVU4Hr1G088270.4 , HORVU4Hr1G088270.7 , HORVU4Hr1G088270.6
Wheat TraesCS4D02G362600 , TraesCS4B02G374800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
2 Sobic.002G411600 CW-type Zinc Finger, putative, expressed -
3 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
4 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
5 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
6 Sobic.001G289800 BAH domain containing protein, putative, expressed -
7 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
8 Sobic.003G422500 expressed protein -
9 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
10 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
11 Sobic.010G010700 PHD-finger family protein, expressed -
12 Sobic.009G191000 MATH domain containing protein, expressed -
13 Sobic.004G263600 - K03655: ATP-dependent DNA helicase RecG
14 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
15 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
16 Sobic.001G365900 PWWP domain containing protein, expressed -
17 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -
18 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
19 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
20 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic004G174200 Sobic004G174200 Sobic004G291900 Sobic004G291900 Sobic004G174200--Sobic004G291900 Sobic002G411600 Sobic002G411600 Sobic004G174200--Sobic002G411600 Sobic008G001200 Sobic008G001200 Sobic004G174200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic004G174200--Sobic010G206900 Sobic002G008900 Sobic002G008900 Sobic004G174200--Sobic002G008900 Sobic001G289800 Sobic001G289800 Sobic004G174200--Sobic001G289800 Sobic005G001000 Sobic005G001000 Sobic004G174200--Sobic005G001000 Sobic003G422500 Sobic003G422500 Sobic004G174200--Sobic003G422500 Sobic001G194200 Sobic001G194200 Sobic004G174200--Sobic001G194200 Sobic004G291900--Sobic001G194200 Sobic004G291900--Sobic001G289800 Sobic004G291900--Sobic004G174200 Sobic004G276400 Sobic004G276400 Sobic004G291900--Sobic004G276400 Sobic004G291900--Sobic005G001000 Sobic004G034900 Sobic004G034900 Sobic004G291900--Sobic004G034900 Sobic009G256400 Sobic009G256400 Sobic004G291900--Sobic009G256400 Sobic001G002000 Sobic001G002000 Sobic004G291900--Sobic001G002000 Sobic010G010700 Sobic010G010700 Sobic004G291900--Sobic010G010700 Sobic009G191000 Sobic009G191000 Sobic002G411600--Sobic009G191000 Sobic002G411600--Sobic003G422500 Sobic002G411600--Sobic010G206900 Sobic002G411600--Sobic002G008900 Sobic002G411600--Sobic004G034900 Sobic002G411600--Sobic004G174200 Sobic010G247800 Sobic010G247800 Sobic002G411600--Sobic010G247800 Sobic001G534700 Sobic001G534700 Sobic002G411600--Sobic001G534700 Sobic003G101400 Sobic003G101400 Sobic002G411600--Sobic003G101400 Sobic003G155100 Sobic003G155100 Sobic008G001200--Sobic003G155100 Sobic008G001200--Sobic010G206900 Sobic008G001200--Sobic009G256400 Sobic003G205200 Sobic003G205200 Sobic008G001200--Sobic003G205200 Sobic008G001200--Sobic010G010700 Sobic008G001200--Sobic001G194200 Sobic008G001200--Sobic005G001000 Sobic008G001200--Sobic004G276400 Sobic008G001200--Sobic004G174200 Sobic010G206900--Sobic010G010700 Sobic001G365900 Sobic001G365900 Sobic010G206900--Sobic001G365900 Sobic010G206900--Sobic004G034900 Sobic010G206900--Sobic001G534700 Sobic010G206900--Sobic010G247800 Sobic010G206900--Sobic002G411600 Sobic010G206900--Sobic008G001200 Sobic003G196300 Sobic003G196300 Sobic010G206900--Sobic003G196300 Sobic009G165700 Sobic009G165700 Sobic010G206900--Sobic009G165700 Sobic002G008900--Sobic009G191000 Sobic002G008900--Sobic002G411600 Sobic007G062800 Sobic007G062800 Sobic002G008900--Sobic007G062800 Sobic002G008900--Sobic003G422500 Sobic002G008900--Sobic005G001000 Sobic002G008900--Sobic010G010700 Sobic002G008900--Sobic004G034900 Sobic002G008900--Sobic010G206900 Sobic009G053900 Sobic009G053900 Sobic002G008900--Sobic009G053900 Sobic001G289600 Sobic001G289600 Sobic001G289800--Sobic001G289600 Sobic001G289800--Sobic003G422500 Sobic001G289800--Sobic001G194200 Sobic001G289800--Sobic004G291900 Sobic001G289800--Sobic004G034900 Sobic001G289800--Sobic001G002000 Sobic001G289800--Sobic010G010700 Sobic001G289800--Sobic007G062800 Sobic001G289800--Sobic005G001000 Sobic005G001000--Sobic001G194200 Sobic005G001000--Sobic002G008900 Sobic001G370900 Sobic001G370900 Sobic005G001000--Sobic001G370900 Sobic005G001000--Sobic003G205200 Sobic005G001000--Sobic004G291900 Sobic003G186000 Sobic003G186000 Sobic005G001000--Sobic003G186000 Sobic005G001000--Sobic008G001200 Sobic005G001000--Sobic003G422500 Sobic005G001000--Sobic009G256400 Sobic003G422500--Sobic002G411600 Sobic003G422500--Sobic009G191000 Sobic003G422500--Sobic001G289600 Sobic003G422500--Sobic009G165700 Sobic003G422500--Sobic002G008900 Sobic003G422500--Sobic004G034900 Sobic003G422500--Sobic001G289800 Sobic001G540400 Sobic001G540400 Sobic003G422500--Sobic001G540400 Sobic008G132600 Sobic008G132600 Sobic003G422500--Sobic008G132600 Sobic001G194200--Sobic004G291900 Sobic006G055200 Sobic006G055200 Sobic001G194200--Sobic006G055200 Sobic001G194200--Sobic005G001000 Sobic001G194200--Sobic010G010700 Sobic001G194200--Sobic004G276400 Sobic001G194200--Sobic001G289800 Sobic001G194200--Sobic008G001200 Sobic001G194200--Sobic010G206900 Sobic001G194200--Sobic004G034900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.