Gene annotation
Transcriptome id Sobic.003G186000.2,Sobic.003G186000.1
Synonym
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6Q475 , A0A1W0VY26
Pfam PF12234 PF00400 PF12234
Panther DB PTHR13950
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G46560 : transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os01g37120.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a038324
Brachypodium PNT72185
Barley HORVU3Hr1G047530.18 , HORVU3Hr1G047530.19 , HORVU3Hr1G047530.13 , HORVU3Hr1G047530.10 , HORVU3Hr1G047530.11 , HORVU3Hr1G047530.16 , HORVU3Hr1G047530.17 , HORVU3Hr1G047530.14 , HORVU3Hr1G047530.15 , HORVU3Hr1G047530.20 , HORVU3Hr1G047530.6 , HORVU3Hr1G047530.1 , HORVU3Hr1G047530.2 , HORVU3Hr1G047530.3 , HORVU3Hr1G047530.4 , HORVU3Hr1G047530.5 , HORVU3Hr1G047530.7 , HORVU3Hr1G047530.8 , HORVU3Hr1G047530.9
Wheat TraesCS3A02G201200 , TraesCS3D02G203900 , TraesCS3B02G224700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
2 Sobic.010G105200 SYD, putative, expressed -
3 Sobic.010G010700 PHD-finger family protein, expressed -
4 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
5 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
6 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
7 Sobic.007G062800 SET domain containing protein, expressed -
8 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
9 Sobic.007G103100 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
10 Sobic.006G040500 phospholipid-transporting ATPase 2, putative, expressed K01530: phospholipid-translocating ATPase
11 Sobic.002G316600 expressed protein -
12 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
13 Sobic.002G308700 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
14 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
15 Sobic.001G289800 BAH domain containing protein, putative, expressed -
16 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
17 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
18 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
19 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
20 Sobic.004G334300 ATMAK10, putative, expressed -


Gene co-expression network
sample Sobic003G186000 Sobic003G186000 Sobic004G276400 Sobic004G276400 Sobic003G186000--Sobic004G276400 Sobic010G105200 Sobic010G105200 Sobic003G186000--Sobic010G105200 Sobic010G010700 Sobic010G010700 Sobic003G186000--Sobic010G010700 Sobic005G001000 Sobic005G001000 Sobic003G186000--Sobic005G001000 Sobic003G205200 Sobic003G205200 Sobic003G186000--Sobic003G205200 Sobic001G194200 Sobic001G194200 Sobic003G186000--Sobic001G194200 Sobic007G062800 Sobic007G062800 Sobic003G186000--Sobic007G062800 Sobic008G001200 Sobic008G001200 Sobic003G186000--Sobic008G001200 Sobic007G103100 Sobic007G103100 Sobic003G186000--Sobic007G103100 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G034900 Sobic004G034900 Sobic004G276400--Sobic004G034900 Sobic004G276400--Sobic007G062800 Sobic004G291900 Sobic004G291900 Sobic004G276400--Sobic004G291900 Sobic004G242400 Sobic004G242400 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200 Sobic010G105200--Sobic004G276400 Sobic009G109200 Sobic009G109200 Sobic010G105200--Sobic009G109200 Sobic010G105200--Sobic003G186000 Sobic007G098500 Sobic007G098500 Sobic010G105200--Sobic007G098500 Sobic010G105200--Sobic004G242400 Sobic010G105200--Sobic004G034900 Sobic010G105200--Sobic007G062800 Sobic005G008800 Sobic005G008800 Sobic010G105200--Sobic005G008800 Sobic010G105200--Sobic010G010700 Sobic010G206900 Sobic010G206900 Sobic010G010700--Sobic010G206900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic010G010700--Sobic001G194200 Sobic010G010700--Sobic007G062800 Sobic002G008900 Sobic002G008900 Sobic010G010700--Sobic002G008900 Sobic005G112300 Sobic005G112300 Sobic010G010700--Sobic005G112300 Sobic010G010700--Sobic008G001200 Sobic010G010700--Sobic003G186000 Sobic005G001000--Sobic001G194200 Sobic005G001000--Sobic002G008900 Sobic001G370900 Sobic001G370900 Sobic005G001000--Sobic001G370900 Sobic005G001000--Sobic003G205200 Sobic005G001000--Sobic004G291900 Sobic005G001000--Sobic003G186000 Sobic005G001000--Sobic008G001200 Sobic003G422500 Sobic003G422500 Sobic005G001000--Sobic003G422500 Sobic009G256400 Sobic009G256400 Sobic005G001000--Sobic009G256400 Sobic002G146300 Sobic002G146300 Sobic003G205200--Sobic002G146300 Sobic003G205200--Sobic005G001000 Sobic003G205200--Sobic008G001200 Sobic003G205200--Sobic001G370900 Sobic003G205200--Sobic003G186000 Sobic010G139600 Sobic010G139600 Sobic003G205200--Sobic010G139600 Sobic003G205200--Sobic004G276400 Sobic003G205200--Sobic001G194200 Sobic008G098900 Sobic008G098900 Sobic003G205200--Sobic008G098900 Sobic001G194200--Sobic004G291900 Sobic006G055200 Sobic006G055200 Sobic001G194200--Sobic006G055200 Sobic001G194200--Sobic005G001000 Sobic001G194200--Sobic010G010700 Sobic001G194200--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic001G194200--Sobic001G289800 Sobic001G194200--Sobic008G001200 Sobic001G194200--Sobic010G206900 Sobic001G194200--Sobic004G034900 Sobic001G540400 Sobic001G540400 Sobic007G062800--Sobic001G540400 Sobic007G062800--Sobic005G112300 Sobic002G405800 Sobic002G405800 Sobic007G062800--Sobic002G405800 Sobic007G062800--Sobic002G008900 Sobic007G062800--Sobic010G010700 Sobic007G062800--Sobic004G242400 Sobic007G062800--Sobic004G034900 Sobic007G062800--Sobic004G276400 Sobic002G397500 Sobic002G397500 Sobic007G062800--Sobic002G397500 Sobic003G155100 Sobic003G155100 Sobic008G001200--Sobic003G155100 Sobic008G001200--Sobic010G206900 Sobic008G001200--Sobic009G256400 Sobic008G001200--Sobic003G205200 Sobic008G001200--Sobic010G010700 Sobic008G001200--Sobic001G194200 Sobic008G001200--Sobic005G001000 Sobic008G001200--Sobic004G276400 Sobic004G174200 Sobic004G174200 Sobic008G001200--Sobic004G174200 Sobic002G316600 Sobic002G316600 Sobic007G103100--Sobic002G316600 Sobic007G103100--Sobic003G186000 Sobic007G103100--Sobic001G194200 Sobic007G103100--Sobic004G291900 Sobic007G103100--Sobic004G276400 Sobic001G527800 Sobic001G527800 Sobic007G103100--Sobic001G527800 Sobic007G103100--Sobic003G205200 Sobic002G275700 Sobic002G275700 Sobic007G103100--Sobic002G275700 Sobic007G103100--Sobic006G055200
Octagon: transcription factors


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