Gene annotation
Transcriptome id Sobic.008G098900.1
Synonym UBP13, Sb08g015020
Functional annotation ubiquitin carboxyl-terminal hydrolase, putative, expressed
UniProt C5YNS5
Pfam PF00917 PF13423 PF14533 PF12436
Panther DB PTHR24006 PTHR24006:SF445
NCBI CDD -
KEGG Orthology K11838; USP7, ubiquitin carboxyl-terminal hydrolase 7
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G06600 : ubiquitin-specific protease 12
RAP-DB (Rice) LOC_Os12g30540.1 : ubiquitin carboxyl-terminal hydrolase, putative, expressed
MaizeGDB (Corn) Zm00025a054108 , Zm00025a016124 , Zm00025a024859 , Zm00025a045074 , Zm00025a033863 , Zm00025a028438
Brachypodium KQJ88127 , KQJ88126 , KQK09967 , KQK09968 , KQJ86691 , KQJ86690 , KQJ86693 , KQJ86692
Barley HORVU4Hr1G034950.79 , HORVU4Hr1G034950.75 , HORVU4Hr1G034950.74 , HORVU4Hr1G034950.76 , HORVU4Hr1G034950.71 , HORVU4Hr1G034950.70 , HORVU4Hr1G034950.72 , HORVU4Hr1G034950.53 , HORVU5Hr1G031980.14 , HORVU5Hr1G031980.15 , HORVU4Hr1G034950.102 , HORVU5Hr1G031980.17 , HORVU5Hr1G031980.11 , HORVU4Hr1G034950.104 , HORVU5Hr1G031980.21 , HORVU5Hr1G031980.20 , HORVU5Hr1G031980.23 , HORVU5Hr1G031980.22 , HORVU5Hr1G031980.25 , HORVU5Hr1G031980.24 , HORVU5Hr1G031980.27 , HORVU5Hr1G031980.26 , HORVU5Hr1G031980.29 , HORVU5Hr1G031980.28 , HORVU4Hr1G034950.39 , HORVU4Hr1G034950.37 , HORVU5Hr1G031980.19 , HORVU4Hr1G034950.9 , HORVU4Hr1G034950.8 , HORVU4Hr1G034950.7 , HORVU4Hr1G034950.6 , HORVU4Hr1G034950.2 , HORVU4Hr1G034950.1 , HORVU4Hr1G034950.99 , HORVU4Hr1G034950.98 , HORVU4Hr1G034950.97 , HORVU4Hr1G034950.96 , HORVU4Hr1G034950.92 , HORVU4Hr1G034950.91 , HORVU4Hr1G034950.90 , HORVU5Hr1G031980.10 , HORVU4Hr1G034950.63 , HORVU4Hr1G034950.61 , HORVU4Hr1G034950.64 , HORVU4Hr1G034950.68 , HORVU4Hr1G034950.69 , HORVU5Hr1G031980.36 , HORVU5Hr1G031980.37 , HORVU5Hr1G031980.34 , HORVU5Hr1G031980.35 , HORVU5Hr1G031980.32 , HORVU5Hr1G031980.33 , HORVU5Hr1G031980.30 , HORVU5Hr1G031980.31 , HORVU5Hr1G031980.38 , HORVU5Hr1G031980.39 , HORVU4Hr1G034950.23 , HORVU5Hr1G031980.42 , HORVU5Hr1G031980.41 , HORVU5Hr1G031980.40 , HORVU4Hr1G034950.47 , HORVU4Hr1G034950.51 , HORVU4Hr1G034950.50 , HORVU4Hr1G034950.54 , HORVU5Hr1G031980.7 , HORVU5Hr1G031980.4 , HORVU5Hr1G031980.5 , HORVU5Hr1G031980.2 , HORVU5Hr1G031980.3 , HORVU5Hr1G031980.1 , HORVU5Hr1G031980.8 , HORVU5Hr1G031980.9 , HORVU4Hr1G034950.88 , HORVU4Hr1G034950.89 , HORVU4Hr1G034950.84 , HORVU4Hr1G034950.85 , HORVU4Hr1G034950.86 , HORVU4Hr1G034950.80 , HORVU4Hr1G034950.16 , HORVU4Hr1G034950.15 , HORVU4Hr1G034950.14 , HORVU4Hr1G034950.13 , HORVU4Hr1G034950.12 , HORVU4Hr1G034950.11 , HORVU4Hr1G034950.19 , HORVU4Hr1G034950.18 , HORVU4Hr1G034950.24 , HORVU4Hr1G034950.21 , HORVU4Hr1G034950.40 , HORVU4Hr1G034950.43 , HORVU4Hr1G034950.45 , HORVU4Hr1G034950.46 , HORVU4Hr1G034950.52 , HORVU4Hr1G034950.57 , HORVU4Hr1G034950.41 , HORVU5Hr1G031980.18 , HORVU4Hr1G034950.100 , HORVU4Hr1G034950.101 , HORVU5Hr1G031980.16 , HORVU4Hr1G034950.103 , HORVU5Hr1G031980.12 , HORVU5Hr1G031980.13 , HORVU5Hr1G031980.6 , HORVU4Hr1G034950.42
Wheat TraesCS5D02G123300 , TraesCS4D02G165800 , TraesCS5D02G123300 , TraesCS5D02G123300 , TraesCS5D02G123300 , TraesCS4A02G163000 , TraesCS4A02G163000 , TraesCS5B02G111000 , TraesCS5B02G111000 , TraesCS5B02G111000 , TraesCS5B02G111000 , TraesCS5B02G111000 , TraesCS5B02G111000 , TraesCS5B02G111000 , TraesCS5B02G111000 , TraesCS5B02G111000 , TraesCS5A02G105900 , TraesCS5A02G105900 , TraesCS5B02G111000 , TraesCS5B02G111000 , TraesCS5B02G111000 , TraesCS5D02G123300 , TraesCS5D02G123300 , TraesCS5D02G123300 , TraesCS5D02G123300 , TraesCS5D02G123300 , TraesCS5D02G123300 , TraesCS5D02G123300 , TraesCS5D02G123300 , TraesCS5D02G123300 , TraesCS5A02G105900 , TraesCS5A02G105900 , TraesCS5A02G105900 , TraesCS5A02G105900 , TraesCS5A02G105900 , TraesCS5A02G105900 , TraesCS5A02G105900 , TraesCS5A02G105900 , TraesCS5A02G105900
Populus PNT22088 , PNT22089 , PNT22086 , PNT22087 , PNT22085 , PNT18496 , PNT18497 , PNT18498 , PNT18499


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
2 Sobic.008G085300 hhH-GPD superfamily base excision DNA repair protein, expressed -
3 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
4 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
5 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
6 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
7 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
8 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
9 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
10 Sobic.009G131300 cation-transporting ATPase, putative, expressed K14950: ATP13A1, manganese-transporting P-type ATPase
11 Sobic.001G289800 BAH domain containing protein, putative, expressed -
12 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
13 Sobic.010G139600 STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
14 Sobic.001G542500 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
15 Sobic.002G429300 importin subunit beta, putative, expressed -
16 Sobic.008G092600 ubiquitin-protein ligase 1, putative, expressed K10592: HUWE1, MULE, E3 ubiquitin-protein ligase HUWE1
17 Sobic.002G430000 expressed protein K08518: STXBP5, syntaxin-binding protein 5
18 Sobic.002G147600 ubiquitin-protein ligase 1, putative, expressed K10592: HUWE1, MULE, E3 ubiquitin-protein ligase HUWE1
19 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
20 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin


Gene co-expression network
sample Sobic008G098900 Sobic008G098900 Sobic001G370900 Sobic001G370900 Sobic008G098900--Sobic001G370900 Sobic008G085300 Sobic008G085300 Sobic008G098900--Sobic008G085300 Sobic001G117200 Sobic001G117200 Sobic008G098900--Sobic001G117200 Sobic003G205200 Sobic003G205200 Sobic008G098900--Sobic003G205200 Sobic005G001000 Sobic005G001000 Sobic008G098900--Sobic005G001000 Sobic003G072200 Sobic003G072200 Sobic008G098900--Sobic003G072200 Sobic005G162500 Sobic005G162500 Sobic008G098900--Sobic005G162500 Sobic002G042600 Sobic002G042600 Sobic008G098900--Sobic002G042600 Sobic004G276400 Sobic004G276400 Sobic008G098900--Sobic004G276400 Sobic001G370900--Sobic008G098900 Sobic001G370900--Sobic005G001000 Sobic009G256400 Sobic009G256400 Sobic001G370900--Sobic009G256400 Sobic002G146300 Sobic002G146300 Sobic001G370900--Sobic002G146300 Sobic001G370900--Sobic003G205200 Sobic001G194200 Sobic001G194200 Sobic001G370900--Sobic001G194200 Sobic001G370900--Sobic004G276400 Sobic008G001200 Sobic008G001200 Sobic001G370900--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic001G370900--Sobic001G457800 Sobic008G085300--Sobic008G098900 Sobic001G542500 Sobic001G542500 Sobic008G085300--Sobic001G542500 Sobic008G085300--Sobic005G162500 Sobic008G085300--Sobic004G276400 Sobic008G092600 Sobic008G092600 Sobic008G085300--Sobic008G092600 Sobic002G147600 Sobic002G147600 Sobic008G085300--Sobic002G147600 Sobic003G186000 Sobic003G186000 Sobic008G085300--Sobic003G186000 Sobic008G085300--Sobic001G370900 Sobic004G291900 Sobic004G291900 Sobic008G085300--Sobic004G291900 Sobic001G117200--Sobic008G098900 Sobic003G408600 Sobic003G408600 Sobic001G117200--Sobic003G408600 Sobic002G430000 Sobic002G430000 Sobic001G117200--Sobic002G430000 Sobic001G540400 Sobic001G540400 Sobic001G117200--Sobic001G540400 Sobic001G137000 Sobic001G137000 Sobic001G117200--Sobic001G137000 Sobic004G113400 Sobic004G113400 Sobic001G117200--Sobic004G113400 Sobic001G117200--Sobic001G542500 Sobic001G058700 Sobic001G058700 Sobic001G117200--Sobic001G058700 Sobic001G117200--Sobic008G092600 Sobic003G205200--Sobic002G146300 Sobic003G205200--Sobic005G001000 Sobic003G205200--Sobic008G001200 Sobic003G205200--Sobic001G370900 Sobic003G205200--Sobic003G186000 Sobic010G139600 Sobic010G139600 Sobic003G205200--Sobic010G139600 Sobic003G205200--Sobic004G276400 Sobic003G205200--Sobic001G194200 Sobic003G205200--Sobic008G098900 Sobic005G001000--Sobic001G194200 Sobic002G008900 Sobic002G008900 Sobic005G001000--Sobic002G008900 Sobic005G001000--Sobic001G370900 Sobic005G001000--Sobic003G205200 Sobic005G001000--Sobic004G291900 Sobic005G001000--Sobic003G186000 Sobic005G001000--Sobic008G001200 Sobic003G422500 Sobic003G422500 Sobic005G001000--Sobic003G422500 Sobic005G001000--Sobic009G256400 Sobic002G397500 Sobic002G397500 Sobic003G072200--Sobic002G397500 Sobic007G098500 Sobic007G098500 Sobic003G072200--Sobic007G098500 Sobic007G062800 Sobic007G062800 Sobic003G072200--Sobic007G062800 Sobic003G233400 Sobic003G233400 Sobic003G072200--Sobic003G233400 Sobic009G084900 Sobic009G084900 Sobic003G072200--Sobic009G084900 Sobic003G072200--Sobic008G098900 Sobic005G112300 Sobic005G112300 Sobic003G072200--Sobic005G112300 Sobic001G347500 Sobic001G347500 Sobic003G072200--Sobic001G347500 Sobic002G133300 Sobic002G133300 Sobic003G072200--Sobic002G133300 Sobic001G493700 Sobic001G493700 Sobic005G162500--Sobic001G493700 Sobic002G429300 Sobic002G429300 Sobic005G162500--Sobic002G429300 Sobic005G162500--Sobic001G370900 Sobic009G131300 Sobic009G131300 Sobic005G162500--Sobic009G131300 Sobic008G088872 Sobic008G088872 Sobic005G162500--Sobic008G088872 Sobic005G162500--Sobic003G186000 Sobic005G162500--Sobic008G098900 Sobic005G162500--Sobic004G276400 Sobic002G335600 Sobic002G335600 Sobic005G162500--Sobic002G335600 Sobic001G065100 Sobic001G065100 Sobic002G042600--Sobic001G065100 Sobic006G184900 Sobic006G184900 Sobic002G042600--Sobic006G184900 Sobic002G042600--Sobic008G098900 Sobic002G401500 Sobic002G401500 Sobic002G042600--Sobic002G401500 Sobic002G179400 Sobic002G179400 Sobic002G042600--Sobic002G179400 Sobic004G322400 Sobic004G322400 Sobic002G042600--Sobic004G322400 Sobic002G042600--Sobic002G429300 Sobic002G042600--Sobic008G088872 Sobic002G042600--Sobic001G370900 Sobic004G276400--Sobic003G186000 Sobic010G010700 Sobic010G010700 Sobic004G276400--Sobic010G010700 Sobic010G105200 Sobic010G105200 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G034900 Sobic004G034900 Sobic004G276400--Sobic004G034900 Sobic004G276400--Sobic007G062800 Sobic004G276400--Sobic004G291900 Sobic004G242400 Sobic004G242400 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200
Octagon: transcription factors


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