Gene annotation
Transcriptome id Sobic.003G205200.1
Synonym Sb03g026680
Functional annotation expressed protein
UniProt A0A1B6Q4H3
Pfam -
Panther DB PTHR35478 PTHR35478:SF1
NCBI CDD -
KEGG Orthology K19027; zinc finger FYVE domain-containing protein 26
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G25730 : -
RAP-DB (Rice) LOC_Os01g40990.3 : expressed protein
MaizeGDB (Corn) Zm00025a028578
Brachypodium KQK08549 , PNT72308 , PNT72309
Barley HORVU3Hr1G051430.14 , HORVU3Hr1G051430.9 , HORVU3Hr1G051430.2 , HORVU3Hr1G051430.3 , HORVU3Hr1G051430.1 , HORVU3Hr1G051430.6 , HORVU3Hr1G051430.7 , HORVU3Hr1G051430.4 , HORVU3Hr1G051430.5 , HORVU3Hr1G051430.10 , HORVU3Hr1G051430.11 , HORVU3Hr1G051430.12 , HORVU3Hr1G051430.13 , HORVU3Hr1G051430.15 , HORVU3Hr1G051430.16 , HORVU3Hr1G051410.1
Wheat TraesCS3A02G212700 , TraesCS3B02G242900 , TraesCS3D02G215100
Populus PNT33539 , PNT33541 , PNT33540 , PNT33542


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
2 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
3 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
4 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
5 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
6 Sobic.010G139600 STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
7 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
8 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
9 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
10 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
11 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
12 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
13 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
14 Sobic.007G062800 SET domain containing protein, expressed -
15 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
16 Sobic.003G422500 expressed protein -
17 Sobic.007G103100 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
18 Sobic.002G411600 CW-type Zinc Finger, putative, expressed -
19 Sobic.010G010700 PHD-finger family protein, expressed -
20 Sobic.001G527800 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer


Gene co-expression network
sample Sobic003G205200 Sobic003G205200 Sobic002G146300 Sobic002G146300 Sobic003G205200--Sobic002G146300 Sobic005G001000 Sobic005G001000 Sobic003G205200--Sobic005G001000 Sobic008G001200 Sobic008G001200 Sobic003G205200--Sobic008G001200 Sobic001G370900 Sobic001G370900 Sobic003G205200--Sobic001G370900 Sobic003G186000 Sobic003G186000 Sobic003G205200--Sobic003G186000 Sobic010G139600 Sobic010G139600 Sobic003G205200--Sobic010G139600 Sobic004G276400 Sobic004G276400 Sobic003G205200--Sobic004G276400 Sobic001G194200 Sobic001G194200 Sobic003G205200--Sobic001G194200 Sobic008G098900 Sobic008G098900 Sobic003G205200--Sobic008G098900 Sobic002G146300--Sobic003G205200 Sobic002G146300--Sobic001G370900 Sobic002G146300--Sobic010G139600 Sobic002G146300--Sobic005G001000 Sobic004G001500 Sobic004G001500 Sobic002G146300--Sobic004G001500 Sobic002G146300--Sobic008G001200 Sobic002G146300--Sobic001G194200 Sobic007G075400 Sobic007G075400 Sobic002G146300--Sobic007G075400 Sobic009G256400 Sobic009G256400 Sobic002G146300--Sobic009G256400 Sobic005G001000--Sobic001G194200 Sobic002G008900 Sobic002G008900 Sobic005G001000--Sobic002G008900 Sobic005G001000--Sobic001G370900 Sobic005G001000--Sobic003G205200 Sobic004G291900 Sobic004G291900 Sobic005G001000--Sobic004G291900 Sobic005G001000--Sobic003G186000 Sobic005G001000--Sobic008G001200 Sobic003G422500 Sobic003G422500 Sobic005G001000--Sobic003G422500 Sobic005G001000--Sobic009G256400 Sobic003G155100 Sobic003G155100 Sobic008G001200--Sobic003G155100 Sobic010G206900 Sobic010G206900 Sobic008G001200--Sobic010G206900 Sobic008G001200--Sobic009G256400 Sobic008G001200--Sobic003G205200 Sobic010G010700 Sobic010G010700 Sobic008G001200--Sobic010G010700 Sobic008G001200--Sobic001G194200 Sobic008G001200--Sobic005G001000 Sobic008G001200--Sobic004G276400 Sobic004G174200 Sobic004G174200 Sobic008G001200--Sobic004G174200 Sobic001G370900--Sobic008G098900 Sobic001G370900--Sobic005G001000 Sobic001G370900--Sobic009G256400 Sobic001G370900--Sobic002G146300 Sobic001G370900--Sobic003G205200 Sobic001G370900--Sobic001G194200 Sobic001G370900--Sobic004G276400 Sobic001G370900--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic001G370900--Sobic001G457800 Sobic003G186000--Sobic004G276400 Sobic010G105200 Sobic010G105200 Sobic003G186000--Sobic010G105200 Sobic003G186000--Sobic010G010700 Sobic003G186000--Sobic005G001000 Sobic003G186000--Sobic003G205200 Sobic003G186000--Sobic001G194200 Sobic007G062800 Sobic007G062800 Sobic003G186000--Sobic007G062800 Sobic003G186000--Sobic008G001200 Sobic007G103100 Sobic007G103100 Sobic003G186000--Sobic007G103100 Sobic010G139600--Sobic007G075400 Sobic010G139600--Sobic002G146300 Sobic010G139600--Sobic003G205200 Sobic010G139600--Sobic008G098900 Sobic003G313500 Sobic003G313500 Sobic010G139600--Sobic003G313500 Sobic010G139600--Sobic005G001000 Sobic010G139600--Sobic001G194200 Sobic010G139600--Sobic003G422500 Sobic010G139600--Sobic001G370900 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G034900 Sobic004G034900 Sobic004G276400--Sobic004G034900 Sobic004G276400--Sobic007G062800 Sobic004G276400--Sobic004G291900 Sobic004G242400 Sobic004G242400 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200 Sobic001G194200--Sobic004G291900 Sobic006G055200 Sobic006G055200 Sobic001G194200--Sobic006G055200 Sobic001G194200--Sobic005G001000 Sobic001G194200--Sobic010G010700 Sobic001G194200--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic001G194200--Sobic001G289800 Sobic001G194200--Sobic008G001200 Sobic001G194200--Sobic010G206900 Sobic001G194200--Sobic004G034900 Sobic008G098900--Sobic001G370900 Sobic008G085300 Sobic008G085300 Sobic008G098900--Sobic008G085300 Sobic001G117200 Sobic001G117200 Sobic008G098900--Sobic001G117200 Sobic008G098900--Sobic003G205200 Sobic008G098900--Sobic005G001000 Sobic003G072200 Sobic003G072200 Sobic008G098900--Sobic003G072200 Sobic005G162500 Sobic005G162500 Sobic008G098900--Sobic005G162500 Sobic002G042600 Sobic002G042600 Sobic008G098900--Sobic002G042600 Sobic008G098900--Sobic004G276400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.