Gene annotation
Transcriptome id Sobic.007G103100.1
Synonym SWP, ATMED14, MED14, Sb07g013350
Functional annotation SWP, putative, expressed
UniProt A0A1B6PH98
Pfam PF08638
Panther DB PTHR12809 PTHR12809:SF3
NCBI CDD KOG1875; Thyroid hormone receptor-associated coactivator complex component (TRAP170)
KEGG Orthology K15156; MED14, mediator of RNA polymerase II transcription subunit 14
Gene Ontology GO:0016592; mediator complex GO:0006357regulation of transcription by RNA polymerase II GO:0001104transcription coregulator activity


Orthologs (automatic annotation)
TAIR AT3G04740 : RNA polymerase II transcription mediators
RAP-DB (Rice) LOC_Os09g10960.1 : SWP, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ89683 , KQJ89684
Barley HORVU2Hr1G050500.10 , HORVU2Hr1G050500.11 , HORVU5Hr1G053430.6 , HORVU5Hr1G053430.7 , HORVU5Hr1G053430.4 , HORVU5Hr1G053430.5 , HORVU5Hr1G053430.2 , HORVU5Hr1G053430.1 , HORVU5Hr1G053430.8 , HORVU5Hr1G053430.9 , HORVU2Hr1G050500.8 , HORVU2Hr1G050500.9 , HORVU2Hr1G050500.2 , HORVU2Hr1G050500.3 , HORVU2Hr1G050500.4 , HORVU2Hr1G050500.5 , HORVU2Hr1G050500.6 , HORVU2Hr1G050500.7
Wheat TraesCS5A02G175600 , TraesCS5A02G175600 , TraesCS2B02G260900 , TraesCS2B02G260900 , TraesCS2B02G260900 , TraesCS2A02G239000 , TraesCS2A02G239000 , TraesCS5D02G179600 , TraesCS5D02G179600 , TraesCS5B02G172500 , TraesCS2D02G234700
Populus -


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cDNA sequences
Sobic.007G103100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G316600 expressed protein -
2 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
3 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
4 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
5 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
6 Sobic.001G527800 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
7 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
8 Sobic.002G275700 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
9 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
10 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
11 Sobic.001G289800 BAH domain containing protein, putative, expressed -
12 Sobic.007G165600 aminopeptidase, putative, expressed K01256: aminopeptidase N
13 Sobic.010G105200 SYD, putative, expressed -
14 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
15 Sobic.001G542500 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
16 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
17 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
18 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
19 Sobic.001G004400 - K14290: XPO1, exportin-1
20 Sobic.008G085300 hhH-GPD superfamily base excision DNA repair protein, expressed -


Gene co-expression network
sample Sobic007G103100 Sobic007G103100 Sobic002G316600 Sobic002G316600 Sobic007G103100--Sobic002G316600 Sobic003G186000 Sobic003G186000 Sobic007G103100--Sobic003G186000 Sobic001G194200 Sobic001G194200 Sobic007G103100--Sobic001G194200 Sobic004G291900 Sobic004G291900 Sobic007G103100--Sobic004G291900 Sobic004G276400 Sobic004G276400 Sobic007G103100--Sobic004G276400 Sobic001G527800 Sobic001G527800 Sobic007G103100--Sobic001G527800 Sobic003G205200 Sobic003G205200 Sobic007G103100--Sobic003G205200 Sobic002G275700 Sobic002G275700 Sobic007G103100--Sobic002G275700 Sobic006G055200 Sobic006G055200 Sobic007G103100--Sobic006G055200 Sobic002G316600--Sobic007G103100 Sobic002G316600--Sobic001G527800 Sobic002G316600--Sobic003G186000 Sobic002G316600--Sobic004G276400 Sobic001G529600 Sobic001G529600 Sobic002G316600--Sobic001G529600 Sobic003G166750 Sobic003G166750 Sobic002G316600--Sobic003G166750 Sobic002G316600--Sobic001G194200 Sobic001G289800 Sobic001G289800 Sobic002G316600--Sobic001G289800 Sobic010G079500 Sobic010G079500 Sobic002G316600--Sobic010G079500 Sobic003G186000--Sobic004G276400 Sobic010G105200 Sobic010G105200 Sobic003G186000--Sobic010G105200 Sobic010G010700 Sobic010G010700 Sobic003G186000--Sobic010G010700 Sobic005G001000 Sobic005G001000 Sobic003G186000--Sobic005G001000 Sobic003G186000--Sobic003G205200 Sobic003G186000--Sobic001G194200 Sobic007G062800 Sobic007G062800 Sobic003G186000--Sobic007G062800 Sobic008G001200 Sobic008G001200 Sobic003G186000--Sobic008G001200 Sobic003G186000--Sobic007G103100 Sobic001G194200--Sobic004G291900 Sobic001G194200--Sobic006G055200 Sobic001G194200--Sobic005G001000 Sobic001G194200--Sobic010G010700 Sobic001G194200--Sobic004G276400 Sobic001G194200--Sobic001G289800 Sobic001G194200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic001G194200--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic001G194200--Sobic004G034900 Sobic004G291900--Sobic001G194200 Sobic004G291900--Sobic001G289800 Sobic004G174200 Sobic004G174200 Sobic004G291900--Sobic004G174200 Sobic004G291900--Sobic004G276400 Sobic004G291900--Sobic005G001000 Sobic004G291900--Sobic004G034900 Sobic009G256400 Sobic009G256400 Sobic004G291900--Sobic009G256400 Sobic001G002000 Sobic001G002000 Sobic004G291900--Sobic001G002000 Sobic004G291900--Sobic010G010700 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G276400--Sobic004G034900 Sobic004G276400--Sobic007G062800 Sobic004G276400--Sobic004G291900 Sobic004G242400 Sobic004G242400 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200 Sobic001G527800--Sobic002G316600 Sobic001G527800--Sobic008G001200 Sobic001G527800--Sobic004G276400 Sobic001G527800--Sobic010G206900 Sobic001G527800--Sobic003G166750 Sobic001G527800--Sobic003G186000 Sobic003G196300 Sobic003G196300 Sobic001G527800--Sobic003G196300 Sobic001G527800--Sobic007G103100 Sobic010G123600 Sobic010G123600 Sobic001G527800--Sobic010G123600 Sobic002G146300 Sobic002G146300 Sobic003G205200--Sobic002G146300 Sobic003G205200--Sobic005G001000 Sobic003G205200--Sobic008G001200 Sobic001G370900 Sobic001G370900 Sobic003G205200--Sobic001G370900 Sobic003G205200--Sobic003G186000 Sobic010G139600 Sobic010G139600 Sobic003G205200--Sobic010G139600 Sobic003G205200--Sobic004G276400 Sobic003G205200--Sobic001G194200 Sobic008G098900 Sobic008G098900 Sobic003G205200--Sobic008G098900 Sobic001G192000 Sobic001G192000 Sobic002G275700--Sobic001G192000 Sobic002G275700--Sobic001G194200 Sobic002G275700--Sobic007G103100 Sobic006G041600 Sobic006G041600 Sobic002G275700--Sobic006G041600 Sobic009G255700 Sobic009G255700 Sobic002G275700--Sobic009G255700 Sobic003G195000 Sobic003G195000 Sobic002G275700--Sobic003G195000 Sobic002G275700--Sobic001G289800 Sobic002G275700--Sobic001G527800 Sobic002G275700--Sobic003G196300 Sobic006G055200--Sobic001G194200 Sobic006G055200--Sobic010G010700 Sobic006G055200--Sobic005G001000 Sobic006G055200--Sobic004G276400 Sobic006G055200--Sobic004G291900 Sobic006G055200--Sobic003G186000 Sobic006G055200--Sobic001G289800 Sobic004G263600 Sobic004G263600 Sobic006G055200--Sobic004G263600 Sobic006G055200--Sobic001G002000
Octagon: transcription factors


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