Gene annotation
Transcriptome id Sobic.007G165600.1
Synonym Sb07g023850
Functional annotation aminopeptidase, putative, expressed
UniProt C5YMT9
Pfam PF01433 PF11940
Panther DB PTHR11533 PTHR11533:SF152
NCBI CDD KOG1046; Puromycin-sensitive aminopeptidase and related aminopeptidases
KEGG Orthology K01256; aminopeptidase N
Gene Ontology GO:0008270; zinc ion binding GO:0008237metallopeptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT1G63770 : Peptidase M1 family protein
RAP-DB (Rice) LOC_Os08g44860.4 : aminopeptidase, putative, expressed
MaizeGDB (Corn) Zm00025a009720 , Zm00025a005555
Brachypodium KQJ94676 , KQJ94677 , KQJ94678 , KQJ94679 , PNT66463 , PNT66464
Barley HORVU7Hr1G021510.2 , HORVU7Hr1G021510.3 , HORVU7Hr1G021510.1 , HORVU7Hr1G021510.6 , HORVU7Hr1G021510.7 , HORVU7Hr1G021510.4 , HORVU7Hr1G021510.5 , HORVU7Hr1G021510.8 , HORVU7Hr1G021510.9 , HORVU7Hr1G021510.34 , HORVU7Hr1G021510.30 , HORVU7Hr1G021510.31 , HORVU7Hr1G021510.36 , HORVU7Hr1G021510.37 , HORVU7Hr1G021510.10 , HORVU7Hr1G021510.11 , HORVU7Hr1G021510.12 , HORVU7Hr1G021510.13 , HORVU7Hr1G021510.14 , HORVU7Hr1G021510.15 , HORVU7Hr1G021510.16 , HORVU7Hr1G021510.17 , HORVU7Hr1G021510.18 , HORVU7Hr1G021510.35 , HORVU7Hr1G021510.25 , HORVU7Hr1G021510.24 , HORVU7Hr1G021510.27 , HORVU7Hr1G021510.26 , HORVU7Hr1G021510.21 , HORVU7Hr1G021510.20 , HORVU7Hr1G021510.23 , HORVU7Hr1G021510.22 , HORVU7Hr1G021510.29 , HORVU7Hr1G021510.28 , HORVU7Hr1G021510.38 , HORVU7Hr1G021510.39 , HORVU7Hr1G021510.32 , HORVU7Hr1G021510.33 , HORVU7Hr1G021510.49 , HORVU7Hr1G021510.48 , HORVU7Hr1G021510.47 , HORVU7Hr1G021510.46 , HORVU7Hr1G021510.45 , HORVU7Hr1G021510.44 , HORVU7Hr1G021510.43 , HORVU7Hr1G021510.42 , HORVU7Hr1G021510.41 , HORVU7Hr1G021510.40 , HORVU7Hr1G021510.19 , HORVU7Hr1G021510.50 , HORVU7Hr1G021510.51 , HORVU7Hr1G021510.52
Wheat TraesCS5D02G172800 , TraesCS5B02G165300 , TraesCS5B02G165300 , TraesCS5A02G168500 , TraesCS5A02G168500 , TraesCS5D02G172800 , TraesCS5D02G172800 , TraesCS5D02G172800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G165600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G103100 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
2 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
3 Sobic.001G004400 - K14290: XPO1, exportin-1
4 Sobic.005G122700 PPR repeat domain containing protein, putative, expressed -
5 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
6 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
7 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
8 Sobic.002G316600 expressed protein -
9 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
10 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
11 Sobic.001G289800 BAH domain containing protein, putative, expressed -
12 Sobic.004G248600 expressed protein K15166: mediator of RNA polymerase II transcription subunit 23
13 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
14 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
15 Sobic.003G166750 - K15188: cyclin T
16 Sobic.006G049900 MYB family transcription factor, putative, expressed K09522: DnaJ homolog subfamily C member 2
17 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
18 Sobic.002G397500 SAC3/GANP family protein, expressed -
19 Sobic.003G110000 TBC domain containing protein, expressed -
20 Sobic.003G195000 OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed K08955: ATP-dependent metalloprotease


Gene co-expression network
sample Sobic007G165600 Sobic007G165600 Sobic007G103100 Sobic007G103100 Sobic007G165600--Sobic007G103100 Sobic006G055200 Sobic006G055200 Sobic007G165600--Sobic006G055200 Sobic001G004400 Sobic001G004400 Sobic007G165600--Sobic001G004400 Sobic005G122700 Sobic005G122700 Sobic007G165600--Sobic005G122700 Sobic002G133300 Sobic002G133300 Sobic007G165600--Sobic002G133300 Sobic009G056200 Sobic009G056200 Sobic007G165600--Sobic009G056200 Sobic001G194200 Sobic001G194200 Sobic007G165600--Sobic001G194200 Sobic002G316600 Sobic002G316600 Sobic007G165600--Sobic002G316600 Sobic003G186000 Sobic003G186000 Sobic007G165600--Sobic003G186000 Sobic007G103100--Sobic002G316600 Sobic007G103100--Sobic003G186000 Sobic007G103100--Sobic001G194200 Sobic004G291900 Sobic004G291900 Sobic007G103100--Sobic004G291900 Sobic004G276400 Sobic004G276400 Sobic007G103100--Sobic004G276400 Sobic001G527800 Sobic001G527800 Sobic007G103100--Sobic001G527800 Sobic003G205200 Sobic003G205200 Sobic007G103100--Sobic003G205200 Sobic002G275700 Sobic002G275700 Sobic007G103100--Sobic002G275700 Sobic007G103100--Sobic006G055200 Sobic006G055200--Sobic001G194200 Sobic010G010700 Sobic010G010700 Sobic006G055200--Sobic010G010700 Sobic005G001000 Sobic005G001000 Sobic006G055200--Sobic005G001000 Sobic006G055200--Sobic004G276400 Sobic006G055200--Sobic004G291900 Sobic006G055200--Sobic003G186000 Sobic001G289800 Sobic001G289800 Sobic006G055200--Sobic001G289800 Sobic004G263600 Sobic004G263600 Sobic006G055200--Sobic004G263600 Sobic001G002000 Sobic001G002000 Sobic006G055200--Sobic001G002000 Sobic001G004400--Sobic002G133300 Sobic001G110600 Sobic001G110600 Sobic001G004400--Sobic001G110600 Sobic007G054800 Sobic007G054800 Sobic001G004400--Sobic007G054800 Sobic004G248600 Sobic004G248600 Sobic001G004400--Sobic004G248600 Sobic003G312100 Sobic003G312100 Sobic001G004400--Sobic003G312100 Sobic001G493700 Sobic001G493700 Sobic001G004400--Sobic001G493700 Sobic003G221400 Sobic003G221400 Sobic001G004400--Sobic003G221400 Sobic001G004400--Sobic004G276400 Sobic002G179400 Sobic002G179400 Sobic001G004400--Sobic002G179400 Sobic005G122700--Sobic002G316600 Sobic005G122700--Sobic007G103100 Sobic003G166750 Sobic003G166750 Sobic005G122700--Sobic003G166750 Sobic001G529600 Sobic001G529600 Sobic005G122700--Sobic001G529600 Sobic005G122700--Sobic002G133300 Sobic005G122700--Sobic001G527800 Sobic005G122700--Sobic001G289800 Sobic010G079500 Sobic010G079500 Sobic005G122700--Sobic010G079500 Sobic001G542500 Sobic001G542500 Sobic005G122700--Sobic001G542500 Sobic002G133300--Sobic004G276400 Sobic001G433800 Sobic001G433800 Sobic002G133300--Sobic001G433800 Sobic002G133300--Sobic001G004400 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic004G131300 Sobic004G131300 Sobic002G133300--Sobic004G131300 Sobic002G133300--Sobic001G194200 Sobic002G133300--Sobic001G493700 Sobic005G172500 Sobic005G172500 Sobic009G056200--Sobic005G172500 Sobic009G056200--Sobic001G194200 Sobic001G227400 Sobic001G227400 Sobic009G056200--Sobic001G227400 Sobic009G056200--Sobic006G055200 Sobic003G195000 Sobic003G195000 Sobic009G056200--Sobic003G195000 Sobic007G207200 Sobic007G207200 Sobic009G056200--Sobic007G207200 Sobic008G063300 Sobic008G063300 Sobic009G056200--Sobic008G063300 Sobic002G142900 Sobic002G142900 Sobic009G056200--Sobic002G142900 Sobic006G055300 Sobic006G055300 Sobic009G056200--Sobic006G055300 Sobic001G194200--Sobic004G291900 Sobic001G194200--Sobic006G055200 Sobic001G194200--Sobic005G001000 Sobic001G194200--Sobic010G010700 Sobic001G194200--Sobic004G276400 Sobic001G194200--Sobic001G289800 Sobic008G001200 Sobic008G001200 Sobic001G194200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic001G194200--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic001G194200--Sobic004G034900 Sobic002G316600--Sobic007G103100 Sobic002G316600--Sobic001G527800 Sobic002G316600--Sobic003G186000 Sobic002G316600--Sobic004G276400 Sobic002G316600--Sobic001G529600 Sobic002G316600--Sobic003G166750 Sobic002G316600--Sobic001G194200 Sobic002G316600--Sobic001G289800 Sobic002G316600--Sobic010G079500 Sobic003G186000--Sobic004G276400 Sobic010G105200 Sobic010G105200 Sobic003G186000--Sobic010G105200 Sobic003G186000--Sobic010G010700 Sobic003G186000--Sobic005G001000 Sobic003G186000--Sobic003G205200 Sobic003G186000--Sobic001G194200 Sobic007G062800 Sobic007G062800 Sobic003G186000--Sobic007G062800 Sobic003G186000--Sobic008G001200 Sobic003G186000--Sobic007G103100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.