Gene annotation
Transcriptome id Sobic.003G110000.1
Synonym Sb03g009250
Functional annotation TBC domain containing protein, expressed
UniProt A0A1B6Q2K7
Pfam PF00566
Panther DB PTHR22957 PTHR22957:SF211
NCBI CDD KOG2197; Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G43490 : Ypt/Rab-GAP domain of gyp1p superfamily protein
RAP-DB (Rice) LOC_Os01g01010.1 : TBC domain containing protein, expressed
MaizeGDB (Corn) Zm00025a023892
Brachypodium KQK23571
Barley HORVU3Hr1G015620.20 , HORVU3Hr1G015620.21 , HORVU3Hr1G015620.9 , HORVU3Hr1G015620.8 , HORVU3Hr1G015620.3 , HORVU3Hr1G015620.7 , HORVU3Hr1G015620.6 , HORVU3Hr1G015620.5 , HORVU3Hr1G015620.4 , HORVU3Hr1G015620.2 , HORVU3Hr1G015620.19 , HORVU3Hr1G015620.18 , HORVU3Hr1G015620.13 , HORVU3Hr1G015620.12 , HORVU3Hr1G015620.11 , HORVU3Hr1G015620.10 , HORVU3Hr1G015620.17 , HORVU3Hr1G015620.16 , HORVU3Hr1G015620.15 , HORVU3Hr1G015620.14
Wheat TraesCS3A02G087000 , TraesCS3A02G087000 , TraesCS3D02G087200 , TraesCS3B02G102400
Populus PNT28695 , PNT28694 , PNS94861 , PNS94862 , PNT28693 , PNT28692


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cDNA sequences
Sobic.003G110000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
2 Sobic.001G085300 phytosulfokine receptor precursor, putative, expressed -
3 Sobic.003G166750 - K15188: cyclin T
4 Sobic.002G275700 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
5 Sobic.002G430000 expressed protein K08518: STXBP5, syntaxin-binding protein 5
6 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
7 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
8 Sobic.009G131300 cation-transporting ATPase, putative, expressed K14950: ATP13A1, manganese-transporting P-type ATPase
9 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
10 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
11 Sobic.007G133700 expressed protein -
12 Sobic.008G087866 - -
13 Sobic.010G139600 STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
14 Sobic.001G192000 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
15 Sobic.001G273700 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
16 Sobic.001G289800 BAH domain containing protein, putative, expressed -
17 Sobic.003G422500 expressed protein -
18 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
19 Sobic.007G103100 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
20 Sobic.001G016700 ion channel DMI1-like, chloroplast precursor, putative, expressed -


Gene co-expression network
sample Sobic003G110000 Sobic003G110000 Sobic008G098900 Sobic008G098900 Sobic003G110000--Sobic008G098900 Sobic001G085300 Sobic001G085300 Sobic003G110000--Sobic001G085300 Sobic003G166750 Sobic003G166750 Sobic003G110000--Sobic003G166750 Sobic002G275700 Sobic002G275700 Sobic003G110000--Sobic002G275700 Sobic002G430000 Sobic002G430000 Sobic003G110000--Sobic002G430000 Sobic001G194200 Sobic001G194200 Sobic003G110000--Sobic001G194200 Sobic001G370900 Sobic001G370900 Sobic003G110000--Sobic001G370900 Sobic009G131300 Sobic009G131300 Sobic003G110000--Sobic009G131300 Sobic001G117200 Sobic001G117200 Sobic003G110000--Sobic001G117200 Sobic008G098900--Sobic001G370900 Sobic008G085300 Sobic008G085300 Sobic008G098900--Sobic008G085300 Sobic008G098900--Sobic001G117200 Sobic003G205200 Sobic003G205200 Sobic008G098900--Sobic003G205200 Sobic005G001000 Sobic005G001000 Sobic008G098900--Sobic005G001000 Sobic003G072200 Sobic003G072200 Sobic008G098900--Sobic003G072200 Sobic005G162500 Sobic005G162500 Sobic008G098900--Sobic005G162500 Sobic002G042600 Sobic002G042600 Sobic008G098900--Sobic002G042600 Sobic004G276400 Sobic004G276400 Sobic008G098900--Sobic004G276400 Sobic001G390800 Sobic001G390800 Sobic001G085300--Sobic001G390800 Sobic003G313500 Sobic003G313500 Sobic001G085300--Sobic003G313500 Sobic001G085300--Sobic001G117200 Sobic001G085300--Sobic003G110000 Sobic003G422500 Sobic003G422500 Sobic001G085300--Sobic003G422500 Sobic001G415300 Sobic001G415300 Sobic001G085300--Sobic001G415300 Sobic010G139600 Sobic010G139600 Sobic001G085300--Sobic010G139600 Sobic003G196300 Sobic003G196300 Sobic001G085300--Sobic003G196300 Sobic001G268200 Sobic001G268200 Sobic001G085300--Sobic001G268200 Sobic009G165700 Sobic009G165700 Sobic003G166750--Sobic009G165700 Sobic008G001200 Sobic008G001200 Sobic003G166750--Sobic008G001200 Sobic009G256400 Sobic009G256400 Sobic003G166750--Sobic009G256400 Sobic003G166750--Sobic001G370900 Sobic001G289800 Sobic001G289800 Sobic003G166750--Sobic001G289800 Sobic002G316600 Sobic002G316600 Sobic003G166750--Sobic002G316600 Sobic003G166750--Sobic001G194200 Sobic001G527800 Sobic001G527800 Sobic003G166750--Sobic001G527800 Sobic001G457800 Sobic001G457800 Sobic003G166750--Sobic001G457800 Sobic001G192000 Sobic001G192000 Sobic002G275700--Sobic001G192000 Sobic002G275700--Sobic001G194200 Sobic007G103100 Sobic007G103100 Sobic002G275700--Sobic007G103100 Sobic006G041600 Sobic006G041600 Sobic002G275700--Sobic006G041600 Sobic009G255700 Sobic009G255700 Sobic002G275700--Sobic009G255700 Sobic003G195000 Sobic003G195000 Sobic002G275700--Sobic003G195000 Sobic002G275700--Sobic001G289800 Sobic002G275700--Sobic001G527800 Sobic002G275700--Sobic003G196300 Sobic001G207400 Sobic001G207400 Sobic002G430000--Sobic001G207400 Sobic002G430000--Sobic001G117200 Sobic004G355000 Sobic004G355000 Sobic002G430000--Sobic004G355000 Sobic002G430000--Sobic008G098900 Sobic001G016700 Sobic001G016700 Sobic002G430000--Sobic001G016700 Sobic004G113400 Sobic004G113400 Sobic002G430000--Sobic004G113400 Sobic002G430000--Sobic010G139600 Sobic008G092600 Sobic008G092600 Sobic002G430000--Sobic008G092600 Sobic002G430000--Sobic003G110000 Sobic004G291900 Sobic004G291900 Sobic001G194200--Sobic004G291900 Sobic006G055200 Sobic006G055200 Sobic001G194200--Sobic006G055200 Sobic001G194200--Sobic005G001000 Sobic010G010700 Sobic010G010700 Sobic001G194200--Sobic010G010700 Sobic001G194200--Sobic004G276400 Sobic001G194200--Sobic001G289800 Sobic001G194200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic001G194200--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic001G194200--Sobic004G034900 Sobic001G370900--Sobic008G098900 Sobic001G370900--Sobic005G001000 Sobic001G370900--Sobic009G256400 Sobic002G146300 Sobic002G146300 Sobic001G370900--Sobic002G146300 Sobic001G370900--Sobic003G205200 Sobic001G370900--Sobic001G194200 Sobic001G370900--Sobic004G276400 Sobic001G370900--Sobic008G001200 Sobic001G370900--Sobic001G457800 Sobic002G429300 Sobic002G429300 Sobic009G131300--Sobic002G429300 Sobic002G401500 Sobic002G401500 Sobic009G131300--Sobic002G401500 Sobic009G131300--Sobic005G162500 Sobic008G088872 Sobic008G088872 Sobic009G131300--Sobic008G088872 Sobic010G059500 Sobic010G059500 Sobic009G131300--Sobic010G059500 Sobic009G131300--Sobic008G098900 Sobic006G184900 Sobic006G184900 Sobic009G131300--Sobic006G184900 Sobic001G493700 Sobic001G493700 Sobic009G131300--Sobic001G493700 Sobic009G084900 Sobic009G084900 Sobic009G131300--Sobic009G084900 Sobic001G117200--Sobic008G098900 Sobic003G408600 Sobic003G408600 Sobic001G117200--Sobic003G408600 Sobic001G117200--Sobic002G430000 Sobic001G540400 Sobic001G540400 Sobic001G117200--Sobic001G540400 Sobic001G137000 Sobic001G137000 Sobic001G117200--Sobic001G137000 Sobic001G117200--Sobic004G113400 Sobic001G542500 Sobic001G542500 Sobic001G117200--Sobic001G542500 Sobic001G058700 Sobic001G058700 Sobic001G117200--Sobic001G058700 Sobic001G117200--Sobic008G092600
Octagon: transcription factors


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