Gene annotation
Transcriptome id Sobic.001G016700.2,Sobic.001G016700.1
Synonym Sb01g001620
Functional annotation ion channel DMI1-like, chloroplast precursor, putative, expressed
UniProt C5WT06 , A0A1B6QGU4
Pfam PF06241
Panther DB PTHR31563 PTHR31563:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G49960 : -
RAP-DB (Rice) LOC_Os03g62650.1 : ion channel DMI1-like, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a025513 , Zm00025a002324 , Zm00025a016348
Brachypodium KQK12174 , KQK12172 , KQK12173 , PNT73816 , PNT73815
Barley HORVU5Hr1G120340.24 , HORVU5Hr1G120340.25 , HORVU5Hr1G120340.26 , HORVU5Hr1G120340.27 , HORVU5Hr1G120340.21 , HORVU5Hr1G120340.23 , HORVU5Hr1G120340.20 , HORVU5Hr1G120340.22 , HORVU5Hr1G120340.11 , HORVU5Hr1G120340.10 , HORVU5Hr1G120340.13 , HORVU5Hr1G120340.12 , HORVU5Hr1G120340.15 , HORVU5Hr1G120340.14 , HORVU5Hr1G120340.17 , HORVU5Hr1G120340.16 , HORVU5Hr1G120340.19 , HORVU5Hr1G120340.18 , HORVU5Hr1G120340.5 , HORVU5Hr1G120340.4 , HORVU5Hr1G120340.7 , HORVU5Hr1G120340.6 , HORVU5Hr1G120340.3 , HORVU5Hr1G120340.2 , HORVU5Hr1G120340.9 , HORVU5Hr1G120340.8
Wheat TraesCS5B02G532600 , TraesCS5B02G532600 , TraesCS4A02G342400 , TraesCS4A02G342400 , TraesCS4A02G342400 , TraesCS5D02G530700 , TraesCS5D02G530700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G430000 expressed protein K08518: STXBP5, syntaxin-binding protein 5
2 Sobic.002G111000 peptidase, putative, expressed -
3 Sobic.001G207400 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
4 Sobic.010G139600 STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
5 Sobic.003G110000 TBC domain containing protein, expressed -
6 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
7 Sobic.006G204900 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
8 Sobic.003G322700 expressed protein -
9 Sobic.003G086900 C2 domain containing protein, putative, expressed -
10 Sobic.007G004500 phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
11 Sobic.002G266000 ankyrin repeat-containing protein, putative, expressed -
12 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
13 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
14 Sobic.004G355000 SAC9, putative, expressed -
15 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
16 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
17 Sobic.004G266400 monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
18 Sobic.008G087866 - -
19 Sobic.001G050200 expressed protein -
20 Sobic.003G247300 protein of unknown function DUF1296 domain containing protein, expressed -


Gene co-expression network
sample Sobic001G016700 Sobic001G016700 Sobic002G430000 Sobic002G430000 Sobic001G016700--Sobic002G430000 Sobic002G111000 Sobic002G111000 Sobic001G016700--Sobic002G111000 Sobic001G207400 Sobic001G207400 Sobic001G016700--Sobic001G207400 Sobic010G139600 Sobic010G139600 Sobic001G016700--Sobic010G139600 Sobic003G110000 Sobic003G110000 Sobic001G016700--Sobic003G110000 Sobic001G390800 Sobic001G390800 Sobic001G016700--Sobic001G390800 Sobic006G204900 Sobic006G204900 Sobic001G016700--Sobic006G204900 Sobic003G322700 Sobic003G322700 Sobic001G016700--Sobic003G322700 Sobic003G086900 Sobic003G086900 Sobic001G016700--Sobic003G086900 Sobic002G430000--Sobic001G207400 Sobic001G117200 Sobic001G117200 Sobic002G430000--Sobic001G117200 Sobic004G355000 Sobic004G355000 Sobic002G430000--Sobic004G355000 Sobic008G098900 Sobic008G098900 Sobic002G430000--Sobic008G098900 Sobic002G430000--Sobic001G016700 Sobic004G113400 Sobic004G113400 Sobic002G430000--Sobic004G113400 Sobic002G430000--Sobic010G139600 Sobic008G092600 Sobic008G092600 Sobic002G430000--Sobic008G092600 Sobic002G430000--Sobic003G110000 Sobic002G111000--Sobic001G207400 Sobic002G111000--Sobic001G390800 Sobic002G111000--Sobic001G016700 Sobic001G121200 Sobic001G121200 Sobic002G111000--Sobic001G121200 Sobic003G365300 Sobic003G365300 Sobic002G111000--Sobic003G365300 Sobic002G111000--Sobic002G430000 Sobic002G111000--Sobic010G139600 Sobic010G147100 Sobic010G147100 Sobic002G111000--Sobic010G147100 Sobic001G137100 Sobic001G137100 Sobic002G111000--Sobic001G137100 Sobic001G207400--Sobic004G355000 Sobic001G207400--Sobic002G430000 Sobic002G270500 Sobic002G270500 Sobic001G207400--Sobic002G270500 Sobic001G207400--Sobic006G204900 Sobic005G157000 Sobic005G157000 Sobic001G207400--Sobic005G157000 Sobic001G207400--Sobic010G139600 Sobic001G207400--Sobic002G111000 Sobic001G207400--Sobic003G322700 Sobic001G050200 Sobic001G050200 Sobic001G207400--Sobic001G050200 Sobic007G075400 Sobic007G075400 Sobic010G139600--Sobic007G075400 Sobic002G146300 Sobic002G146300 Sobic010G139600--Sobic002G146300 Sobic003G205200 Sobic003G205200 Sobic010G139600--Sobic003G205200 Sobic010G139600--Sobic008G098900 Sobic003G313500 Sobic003G313500 Sobic010G139600--Sobic003G313500 Sobic005G001000 Sobic005G001000 Sobic010G139600--Sobic005G001000 Sobic001G194200 Sobic001G194200 Sobic010G139600--Sobic001G194200 Sobic003G422500 Sobic003G422500 Sobic010G139600--Sobic003G422500 Sobic001G370900 Sobic001G370900 Sobic010G139600--Sobic001G370900 Sobic003G110000--Sobic008G098900 Sobic001G085300 Sobic001G085300 Sobic003G110000--Sobic001G085300 Sobic003G166750 Sobic003G166750 Sobic003G110000--Sobic003G166750 Sobic002G275700 Sobic002G275700 Sobic003G110000--Sobic002G275700 Sobic003G110000--Sobic002G430000 Sobic003G110000--Sobic001G194200 Sobic003G110000--Sobic001G370900 Sobic009G131300 Sobic009G131300 Sobic003G110000--Sobic009G131300 Sobic003G110000--Sobic001G117200 Sobic001G268200 Sobic001G268200 Sobic001G390800--Sobic001G268200 Sobic001G390800--Sobic001G121200 Sobic001G390800--Sobic003G313500 Sobic010G205800 Sobic010G205800 Sobic001G390800--Sobic010G205800 Sobic001G390800--Sobic001G085300 Sobic001G390800--Sobic010G147100 Sobic001G390800--Sobic007G075400 Sobic001G390800--Sobic010G139600 Sobic001G390800--Sobic001G050200 Sobic006G204900--Sobic003G322700 Sobic006G204900--Sobic001G207400 Sobic004G269200 Sobic004G269200 Sobic006G204900--Sobic004G269200 Sobic009G133500 Sobic009G133500 Sobic006G204900--Sobic009G133500 Sobic010G001500 Sobic010G001500 Sobic006G204900--Sobic010G001500 Sobic004G068400 Sobic004G068400 Sobic006G204900--Sobic004G068400 Sobic006G204900--Sobic004G355000 Sobic003G320700 Sobic003G320700 Sobic006G204900--Sobic003G320700 Sobic006G204900--Sobic002G430000 Sobic002G266000 Sobic002G266000 Sobic003G322700--Sobic002G266000 Sobic003G322700--Sobic006G204900 Sobic003G322700--Sobic010G001500 Sobic003G322700--Sobic004G355000 Sobic003G322700--Sobic001G207400 Sobic003G355600 Sobic003G355600 Sobic003G322700--Sobic003G355600 Sobic006G087700 Sobic006G087700 Sobic003G322700--Sobic006G087700 Sobic006G199000 Sobic006G199000 Sobic003G322700--Sobic006G199000 Sobic004G034600 Sobic004G034600 Sobic003G322700--Sobic004G034600 Sobic007G193700 Sobic007G193700 Sobic003G086900--Sobic007G193700 Sobic006G225900 Sobic006G225900 Sobic003G086900--Sobic006G225900 Sobic010G196500 Sobic010G196500 Sobic003G086900--Sobic010G196500 Sobic004G174200 Sobic004G174200 Sobic003G086900--Sobic004G174200 Sobic003G086900--Sobic001G016700 Sobic003G086900--Sobic001G390800 Sobic003G086900--Sobic001G268200 Sobic003G086900--Sobic001G121200 Sobic003G086900--Sobic003G422500
Octagon: transcription factors


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