Gene annotation
Transcriptome id Sobic.001G207400.2,Sobic.001G207400.1
Synonym
Functional annotation katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed
UniProt A0A1Z5S6L0 , A0A1Z5S6N6
Pfam PF00400 PF13925 PF13925 PF00400
Panther DB PTHR19845 PTHR19845:SF4
NCBI CDD KOG0267; Microtubule severing protein katanin p80 subunit B (contains WD40 repeats)
KEGG Orthology K18643; katanin p80 WD40 repeat-containing subunit B1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G08390 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os10g35200.1 : katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed
MaizeGDB (Corn) Zm00025a006477
Brachypodium KQJ97279 , KQJ97278 , KQJ97273 , KQJ97272 , KQJ97275 , KQJ97274 , KQJ97277 , KQJ97276 , KQJ97280 , KQJ97281 , KQJ97282 , KQJ97283 , PNT67632 , PNT67633 , PNT67630 , PNT67631 , PNT67636 , PNT67634 , PNT67635 , PNT67629
Barley HORVU1Hr1G061600.2 , HORVU1Hr1G061600.27 , HORVU1Hr1G061600.26 , HORVU1Hr1G061600.24 , HORVU1Hr1G061600.23 , HORVU1Hr1G061600.22 , HORVU1Hr1G061600.21 , HORVU1Hr1G061600.20 , HORVU1Hr1G061600.5 , HORVU1Hr1G061600.6 , HORVU1Hr1G061600.1 , HORVU1Hr1G061600.34 , HORVU1Hr1G061600.35 , HORVU1Hr1G061600.36 , HORVU1Hr1G061600.37 , HORVU1Hr1G061600.30 , HORVU1Hr1G061600.31 , HORVU1Hr1G061600.32 , HORVU1Hr1G061600.33 , HORVU1Hr1G061600.38 , HORVU1Hr1G061600.39 , HORVU1Hr1G061600.8 , HORVU1Hr1G061600.9 , HORVU1Hr1G061600.4 , HORVU1Hr1G061600.7 , HORVU1Hr1G061600.3 , HORVU1Hr1G061600.18 , HORVU1Hr1G061600.16 , HORVU1Hr1G061600.17 , HORVU1Hr1G061600.14 , HORVU1Hr1G061600.15 , HORVU1Hr1G061600.12 , HORVU1Hr1G061600.13 , HORVU1Hr1G061600.10 , HORVU1Hr1G061600.11 , HORVU1Hr1G061600.29 , HORVU1Hr1G061600.28
Wheat TraesCS1D02G151100 , TraesCS1A02G164300 , TraesCS1D02G161300 , TraesCS1D02G161300 , TraesCS1D02G161300 , TraesCS1B02G181100
Populus -


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cDNA sequences
Sobic.001G207400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G355000 SAC9, putative, expressed -
2 Sobic.002G430000 expressed protein K08518: STXBP5, syntaxin-binding protein 5
3 Sobic.002G270500 UBX domain-containing protein, putative, expressed -
4 Sobic.006G204900 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
5 Sobic.005G157000 expressed protein -
6 Sobic.010G139600 STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
7 Sobic.002G111000 peptidase, putative, expressed -
8 Sobic.003G322700 expressed protein -
9 Sobic.001G050200 expressed protein -
10 Sobic.001G016700 ion channel DMI1-like, chloroplast precursor, putative, expressed -
11 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
12 Sobic.007G075400 expressed protein -
13 Sobic.004G329400 formin, putative, expressed -
14 Sobic.004G269200 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
15 Sobic.001G301700 MYB family transcription factor, putative, expressed K09522: DnaJ homolog subfamily C member 2
16 Sobic.003G247300 protein of unknown function DUF1296 domain containing protein, expressed -
17 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
18 Sobic.007G060201 - -
19 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
20 Sobic.009G010600 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1


Gene co-expression network
sample Sobic001G207400 Sobic001G207400 Sobic004G355000 Sobic004G355000 Sobic001G207400--Sobic004G355000 Sobic002G430000 Sobic002G430000 Sobic001G207400--Sobic002G430000 Sobic002G270500 Sobic002G270500 Sobic001G207400--Sobic002G270500 Sobic006G204900 Sobic006G204900 Sobic001G207400--Sobic006G204900 Sobic005G157000 Sobic005G157000 Sobic001G207400--Sobic005G157000 Sobic010G139600 Sobic010G139600 Sobic001G207400--Sobic010G139600 Sobic002G111000 Sobic002G111000 Sobic001G207400--Sobic002G111000 Sobic003G322700 Sobic003G322700 Sobic001G207400--Sobic003G322700 Sobic001G050200 Sobic001G050200 Sobic001G207400--Sobic001G050200 Sobic004G355000--Sobic001G207400 Sobic004G355000--Sobic002G430000 Sobic001G248300 Sobic001G248300 Sobic004G355000--Sobic001G248300 Sobic005G001000 Sobic005G001000 Sobic004G355000--Sobic005G001000 Sobic004G329400 Sobic004G329400 Sobic004G355000--Sobic004G329400 Sobic004G355000--Sobic005G157000 Sobic004G355000--Sobic003G322700 Sobic004G113400 Sobic004G113400 Sobic004G355000--Sobic004G113400 Sobic009G010600 Sobic009G010600 Sobic004G355000--Sobic009G010600 Sobic002G430000--Sobic001G207400 Sobic001G117200 Sobic001G117200 Sobic002G430000--Sobic001G117200 Sobic002G430000--Sobic004G355000 Sobic008G098900 Sobic008G098900 Sobic002G430000--Sobic008G098900 Sobic001G016700 Sobic001G016700 Sobic002G430000--Sobic001G016700 Sobic002G430000--Sobic004G113400 Sobic002G430000--Sobic010G139600 Sobic008G092600 Sobic008G092600 Sobic002G430000--Sobic008G092600 Sobic003G110000 Sobic003G110000 Sobic002G430000--Sobic003G110000 Sobic007G024700 Sobic007G024700 Sobic002G270500--Sobic007G024700 Sobic002G270500--Sobic001G207400 Sobic002G270500--Sobic004G355000 Sobic002G270500--Sobic005G157000 Sobic002G270500--Sobic002G430000 Sobic009G126900 Sobic009G126900 Sobic002G270500--Sobic009G126900 Sobic009G094300 Sobic009G094300 Sobic002G270500--Sobic009G094300 Sobic002G270500--Sobic004G113400 Sobic004G269200 Sobic004G269200 Sobic002G270500--Sobic004G269200 Sobic006G204900--Sobic003G322700 Sobic006G204900--Sobic001G207400 Sobic006G204900--Sobic004G269200 Sobic009G133500 Sobic009G133500 Sobic006G204900--Sobic009G133500 Sobic010G001500 Sobic010G001500 Sobic006G204900--Sobic010G001500 Sobic004G068400 Sobic004G068400 Sobic006G204900--Sobic004G068400 Sobic006G204900--Sobic004G355000 Sobic003G320700 Sobic003G320700 Sobic006G204900--Sobic003G320700 Sobic006G204900--Sobic002G430000 Sobic005G157000--Sobic004G329400 Sobic005G157000--Sobic001G207400 Sobic005G157000--Sobic004G355000 Sobic005G157000--Sobic007G024700 Sobic005G157000--Sobic004G269200 Sobic005G157000--Sobic002G270500 Sobic005G157000--Sobic004G113400 Sobic005G157000--Sobic009G094300 Sobic005G157000--Sobic002G430000 Sobic007G075400 Sobic007G075400 Sobic010G139600--Sobic007G075400 Sobic002G146300 Sobic002G146300 Sobic010G139600--Sobic002G146300 Sobic003G205200 Sobic003G205200 Sobic010G139600--Sobic003G205200 Sobic010G139600--Sobic008G098900 Sobic003G313500 Sobic003G313500 Sobic010G139600--Sobic003G313500 Sobic010G139600--Sobic005G001000 Sobic001G194200 Sobic001G194200 Sobic010G139600--Sobic001G194200 Sobic003G422500 Sobic003G422500 Sobic010G139600--Sobic003G422500 Sobic001G370900 Sobic001G370900 Sobic010G139600--Sobic001G370900 Sobic002G111000--Sobic001G207400 Sobic001G390800 Sobic001G390800 Sobic002G111000--Sobic001G390800 Sobic002G111000--Sobic001G016700 Sobic001G121200 Sobic001G121200 Sobic002G111000--Sobic001G121200 Sobic003G365300 Sobic003G365300 Sobic002G111000--Sobic003G365300 Sobic002G111000--Sobic002G430000 Sobic002G111000--Sobic010G139600 Sobic010G147100 Sobic010G147100 Sobic002G111000--Sobic010G147100 Sobic001G137100 Sobic001G137100 Sobic002G111000--Sobic001G137100 Sobic002G266000 Sobic002G266000 Sobic003G322700--Sobic002G266000 Sobic003G322700--Sobic006G204900 Sobic003G322700--Sobic010G001500 Sobic003G322700--Sobic004G355000 Sobic003G322700--Sobic001G207400 Sobic003G355600 Sobic003G355600 Sobic003G322700--Sobic003G355600 Sobic006G087700 Sobic006G087700 Sobic003G322700--Sobic006G087700 Sobic006G199000 Sobic006G199000 Sobic003G322700--Sobic006G199000 Sobic004G034600 Sobic004G034600 Sobic003G322700--Sobic004G034600 Sobic002G419800 Sobic002G419800 Sobic001G050200--Sobic002G419800 Sobic001G050200--Sobic003G422500 Sobic009G027300 Sobic009G027300 Sobic001G050200--Sobic009G027300 Sobic003G247300 Sobic003G247300 Sobic001G050200--Sobic003G247300 Sobic009G191000 Sobic009G191000 Sobic001G050200--Sobic009G191000 Sobic001G050200--Sobic007G075400 Sobic001G050200--Sobic004G269200 Sobic004G331100 Sobic004G331100 Sobic001G050200--Sobic004G331100 Sobic003G101400 Sobic003G101400 Sobic001G050200--Sobic003G101400
Octagon: transcription factors


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