Gene annotation
Transcriptome id Sobic.002G270500.1
Synonym Sb02g030430, SAY1
Functional annotation UBX domain-containing protein, putative, expressed
UniProt C5X636
Pfam PF14555 PF00789
Panther DB PTHR23322 PTHR23322:SF3
NCBI CDD KOG1363; Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains)
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G11740 : Ubiquitin-like superfamily protein
RAP-DB (Rice) LOC_Os09g35710.1 : UBX domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a014394 , Zm00025a047721 , Zm00025a022333 , Zm00025a022332
Brachypodium KQJ91126 , KQJ91125 , PNT64994 , PNT68539 , KQJ99260
Barley HORVU5Hr1G080610.4 , HORVU5Hr1G080610.2 , HORVU5Hr1G080610.3 , HORVU5Hr1G080610.1
Wheat TraesCS5D02G319900 , TraesCS5A02G313200 , TraesCS5A02G313200 , TraesCS5B02G314100
Populus PNT45179 , PNT45178 , PNT45173 , PNT45175 , PNT45177 , PNT45176 , PNT53877 , PNT53875 , PNT45180 , PNT53876


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cDNA sequences
Sobic.002G270500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
2 Sobic.001G207400 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
3 Sobic.004G355000 SAC9, putative, expressed -
4 Sobic.005G157000 expressed protein -
5 Sobic.002G430000 expressed protein K08518: STXBP5, syntaxin-binding protein 5
6 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
7 Sobic.009G094300 emp24/gp25L/p24 family protein, putative, expressed -
8 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
9 Sobic.004G269200 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
10 Sobic.010G130200 BPI/LBP family protein At3g20270 precursor, putative, expressed K05399: lipopolysaccharide-binding protein
11 Sobic.001G281100 START domain containing protein, expressed -
12 Sobic.009G010600 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
13 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
14 Sobic.001G270400 OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed -
15 Sobic.010G112300 aluminum-activated malate transporter, putative, expressed -
16 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
17 Sobic.005G059600 WD domain, G-beta repeat domain containing protein, expressed -
18 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
19 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
20 Sobic.010G232600 solute carrier family 35 member F5, putative, expressed K15289: solute carrier family 35, member F5


Gene co-expression network
sample Sobic002G270500 Sobic002G270500 Sobic007G024700 Sobic007G024700 Sobic002G270500--Sobic007G024700 Sobic001G207400 Sobic001G207400 Sobic002G270500--Sobic001G207400 Sobic004G355000 Sobic004G355000 Sobic002G270500--Sobic004G355000 Sobic005G157000 Sobic005G157000 Sobic002G270500--Sobic005G157000 Sobic002G430000 Sobic002G430000 Sobic002G270500--Sobic002G430000 Sobic009G126900 Sobic009G126900 Sobic002G270500--Sobic009G126900 Sobic009G094300 Sobic009G094300 Sobic002G270500--Sobic009G094300 Sobic004G113400 Sobic004G113400 Sobic002G270500--Sobic004G113400 Sobic004G269200 Sobic004G269200 Sobic002G270500--Sobic004G269200 Sobic007G024700--Sobic002G270500 Sobic007G024700--Sobic009G094300 Sobic009G249200 Sobic009G249200 Sobic007G024700--Sobic009G249200 Sobic004G052900 Sobic004G052900 Sobic007G024700--Sobic004G052900 Sobic001G270400 Sobic001G270400 Sobic007G024700--Sobic001G270400 Sobic004G264400 Sobic004G264400 Sobic007G024700--Sobic004G264400 Sobic003G305200 Sobic003G305200 Sobic007G024700--Sobic003G305200 Sobic002G132000 Sobic002G132000 Sobic007G024700--Sobic002G132000 Sobic002G419800 Sobic002G419800 Sobic007G024700--Sobic002G419800 Sobic001G207400--Sobic004G355000 Sobic001G207400--Sobic002G430000 Sobic001G207400--Sobic002G270500 Sobic006G204900 Sobic006G204900 Sobic001G207400--Sobic006G204900 Sobic001G207400--Sobic005G157000 Sobic010G139600 Sobic010G139600 Sobic001G207400--Sobic010G139600 Sobic002G111000 Sobic002G111000 Sobic001G207400--Sobic002G111000 Sobic003G322700 Sobic003G322700 Sobic001G207400--Sobic003G322700 Sobic001G050200 Sobic001G050200 Sobic001G207400--Sobic001G050200 Sobic004G355000--Sobic001G207400 Sobic004G355000--Sobic002G430000 Sobic001G248300 Sobic001G248300 Sobic004G355000--Sobic001G248300 Sobic005G001000 Sobic005G001000 Sobic004G355000--Sobic005G001000 Sobic004G329400 Sobic004G329400 Sobic004G355000--Sobic004G329400 Sobic004G355000--Sobic005G157000 Sobic004G355000--Sobic003G322700 Sobic004G355000--Sobic004G113400 Sobic009G010600 Sobic009G010600 Sobic004G355000--Sobic009G010600 Sobic005G157000--Sobic004G329400 Sobic005G157000--Sobic001G207400 Sobic005G157000--Sobic004G355000 Sobic005G157000--Sobic007G024700 Sobic005G157000--Sobic004G269200 Sobic005G157000--Sobic002G270500 Sobic005G157000--Sobic004G113400 Sobic005G157000--Sobic009G094300 Sobic005G157000--Sobic002G430000 Sobic002G430000--Sobic001G207400 Sobic001G117200 Sobic001G117200 Sobic002G430000--Sobic001G117200 Sobic002G430000--Sobic004G355000 Sobic008G098900 Sobic008G098900 Sobic002G430000--Sobic008G098900 Sobic001G016700 Sobic001G016700 Sobic002G430000--Sobic001G016700 Sobic002G430000--Sobic004G113400 Sobic002G430000--Sobic010G139600 Sobic008G092600 Sobic008G092600 Sobic002G430000--Sobic008G092600 Sobic003G110000 Sobic003G110000 Sobic002G430000--Sobic003G110000 Sobic010G043400 Sobic010G043400 Sobic009G126900--Sobic010G043400 Sobic009G126900--Sobic002G270500 Sobic002G009700 Sobic002G009700 Sobic009G126900--Sobic002G009700 Sobic006G271200 Sobic006G271200 Sobic009G126900--Sobic006G271200 Sobic001G003000 Sobic001G003000 Sobic009G126900--Sobic001G003000 Sobic004G124200 Sobic004G124200 Sobic009G126900--Sobic004G124200 Sobic003G005600 Sobic003G005600 Sobic009G126900--Sobic003G005600 Sobic003G329400 Sobic003G329400 Sobic009G126900--Sobic003G329400 Sobic004G101900 Sobic004G101900 Sobic009G126900--Sobic004G101900 Sobic009G094300--Sobic007G024700 Sobic009G094300--Sobic004G113400 Sobic009G094300--Sobic002G270500 Sobic009G094300--Sobic004G329400 Sobic009G094300--Sobic005G157000 Sobic009G094300--Sobic004G052900 Sobic009G094300--Sobic001G270400 Sobic009G094300--Sobic001G248300 Sobic009G094300--Sobic001G207400 Sobic004G113400--Sobic009G010600 Sobic003G408600 Sobic003G408600 Sobic004G113400--Sobic003G408600 Sobic004G113400--Sobic004G329400 Sobic001G058700 Sobic001G058700 Sobic004G113400--Sobic001G058700 Sobic008G099800 Sobic008G099800 Sobic004G113400--Sobic008G099800 Sobic001G178700 Sobic001G178700 Sobic004G113400--Sobic001G178700 Sobic004G113400--Sobic001G117200 Sobic001G534800 Sobic001G534800 Sobic004G113400--Sobic001G534800 Sobic004G113400--Sobic002G430000 Sobic009G027300 Sobic009G027300 Sobic004G269200--Sobic009G027300 Sobic004G269200--Sobic001G050200 Sobic001G281100 Sobic001G281100 Sobic004G269200--Sobic001G281100 Sobic004G269200--Sobic004G329400 Sobic004G331100 Sobic004G331100 Sobic004G269200--Sobic004G331100 Sobic003G101400 Sobic003G101400 Sobic004G269200--Sobic003G101400 Sobic004G004300 Sobic004G004300 Sobic004G269200--Sobic004G004300 Sobic004G269200--Sobic005G157000 Sobic004G269200--Sobic001G534800
Octagon: transcription factors


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