Gene annotation
Transcriptome id Sobic.005G059600.1,Sobic.005G059600.2
Synonym Sb05g004850
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1Z5RGY3 , C5Y633 , A0A109NDM3
Pfam PF00400
Panther DB PTHR14107 PTHR14107:SF18
NCBI CDD KOG2394; WD40 protein DMR-N9
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G53390 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os12g07450.1,LOC_Os12g07450.2 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a012828 , Zm00025a034003 , Zm00025a025730
Brachypodium KQJ92046 , KQJ89205
Barley HORVU5Hr1G036690.7 , HORVU5Hr1G036690.6 , HORVU5Hr1G036690.5 , HORVU5Hr1G036690.3 , HORVU5Hr1G036690.2 , HORVU5Hr1G036690.9 , HORVU5Hr1G036690.8 , HORVU5Hr1G036690.11 , HORVU5Hr1G036690.10 , HORVU4Hr1G019090.10 , HORVU5Hr1G036690.1 , HORVU4Hr1G019090.7 , HORVU4Hr1G019090.6 , HORVU4Hr1G019090.5 , HORVU4Hr1G019090.4 , HORVU4Hr1G019090.3 , HORVU4Hr1G019090.2 , HORVU4Hr1G019090.1 , HORVU4Hr1G019090.9 , HORVU4Hr1G019090.8 , HORVU4Hr1G019090.11
Wheat TraesCS4B02G094400 , TraesCS5B02G118700 , TraesCS5A02G111700 , TraesCS5A02G111700 , TraesCS4A02G221900 , TraesCS5B02G118700 , TraesCS4D02G091200 , TraesCS5D02G127600 , TraesCS4A02G221900 , TraesCS4B02G094400 , TraesCS4B02G094400 , TraesCS4B02G094400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.005G059600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G351300 protein binding protein, putative, expressed -
2 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
3 Sobic.002G270500 UBX domain-containing protein, putative, expressed -
4 Sobic.006G237900 UBA/TS-N domain containing protein, expressed -
5 Sobic.004G177300 SPRY-domain containing protein, putative, expressed -
6 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
7 Sobic.004G228800 LMBR1 integral membrane protein, putative, expressed -
8 Sobic.001G273700 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
9 Sobic.004G016000 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
10 Sobic.002G262900 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed K05955: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
11 Sobic.004G004200 expressed protein -
12 Sobic.004G269200 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
13 Sobic.002G430000 expressed protein K08518: STXBP5, syntaxin-binding protein 5
14 Sobic.002G156000 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed K14724: SLC9A8, solute carrier family 9 (sodium/hydrogen exchanger), member 8
15 Sobic.007G205900 uvrB/uvrC motif family protein, expressed -
16 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
17 Sobic.001G003000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
18 Sobic.006G204900 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
19 Sobic.002G008800 PTEN, putative, expressed K01110: phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN
20 Sobic.006G077300 expressed protein K17637: EXOC2, exocyst complex component 2


Gene co-expression network
sample Sobic005G059600 Sobic005G059600 Sobic004G351300 Sobic004G351300 Sobic005G059600--Sobic004G351300 Sobic006G271200 Sobic006G271200 Sobic005G059600--Sobic006G271200 Sobic002G270500 Sobic002G270500 Sobic005G059600--Sobic002G270500 Sobic006G237900 Sobic006G237900 Sobic005G059600--Sobic006G237900 Sobic004G177300 Sobic004G177300 Sobic005G059600--Sobic004G177300 Sobic010G261600 Sobic010G261600 Sobic005G059600--Sobic010G261600 Sobic004G228800 Sobic004G228800 Sobic005G059600--Sobic004G228800 Sobic001G273700 Sobic001G273700 Sobic005G059600--Sobic001G273700 Sobic004G016000 Sobic004G016000 Sobic005G059600--Sobic004G016000 Sobic004G351300--Sobic005G059600 Sobic004G351300--Sobic004G016000 Sobic004G351300--Sobic006G237900 Sobic004G351300--Sobic006G271200 Sobic003G101850 Sobic003G101850 Sobic004G351300--Sobic003G101850 Sobic010G072800 Sobic010G072800 Sobic004G351300--Sobic010G072800 Sobic006G126500 Sobic006G126500 Sobic004G351300--Sobic006G126500 Sobic001G003000 Sobic001G003000 Sobic004G351300--Sobic001G003000 Sobic003G089000 Sobic003G089000 Sobic004G351300--Sobic003G089000 Sobic006G271200--Sobic001G003000 Sobic006G271200--Sobic006G237900 Sobic009G126900 Sobic009G126900 Sobic006G271200--Sobic009G126900 Sobic010G130200 Sobic010G130200 Sobic006G271200--Sobic010G130200 Sobic001G089800 Sobic001G089800 Sobic006G271200--Sobic001G089800 Sobic010G043400 Sobic010G043400 Sobic006G271200--Sobic010G043400 Sobic006G271200--Sobic004G351300 Sobic001G436900 Sobic001G436900 Sobic006G271200--Sobic001G436900 Sobic006G271200--Sobic010G072800 Sobic007G024700 Sobic007G024700 Sobic002G270500--Sobic007G024700 Sobic001G207400 Sobic001G207400 Sobic002G270500--Sobic001G207400 Sobic004G355000 Sobic004G355000 Sobic002G270500--Sobic004G355000 Sobic005G157000 Sobic005G157000 Sobic002G270500--Sobic005G157000 Sobic002G430000 Sobic002G430000 Sobic002G270500--Sobic002G430000 Sobic002G270500--Sobic009G126900 Sobic009G094300 Sobic009G094300 Sobic002G270500--Sobic009G094300 Sobic004G113400 Sobic004G113400 Sobic002G270500--Sobic004G113400 Sobic004G269200 Sobic004G269200 Sobic002G270500--Sobic004G269200 Sobic006G237900--Sobic006G271200 Sobic006G237900--Sobic004G351300 Sobic006G237900--Sobic001G003000 Sobic006G237900--Sobic005G059600 Sobic010G129600 Sobic010G129600 Sobic006G237900--Sobic010G129600 Sobic006G237900--Sobic010G130200 Sobic006G237900--Sobic010G043400 Sobic006G237900--Sobic001G089800 Sobic006G237900--Sobic001G436900 Sobic002G008800 Sobic002G008800 Sobic004G177300--Sobic002G008800 Sobic004G177300--Sobic003G089000 Sobic002G262900 Sobic002G262900 Sobic004G177300--Sobic002G262900 Sobic004G065000 Sobic004G065000 Sobic004G177300--Sobic004G065000 Sobic010G020300 Sobic010G020300 Sobic004G177300--Sobic010G020300 Sobic004G177300--Sobic010G261600 Sobic004G177300--Sobic005G059600 Sobic009G133500 Sobic009G133500 Sobic004G177300--Sobic009G133500 Sobic002G263600 Sobic002G263600 Sobic004G177300--Sobic002G263600 Sobic003G338500 Sobic003G338500 Sobic010G261600--Sobic003G338500 Sobic002G303600 Sobic002G303600 Sobic010G261600--Sobic002G303600 Sobic010G261600--Sobic002G008800 Sobic010G261600--Sobic004G228800 Sobic004G323700 Sobic004G323700 Sobic010G261600--Sobic004G323700 Sobic010G261600--Sobic002G262900 Sobic009G228700 Sobic009G228700 Sobic010G261600--Sobic009G228700 Sobic004G275700 Sobic004G275700 Sobic010G261600--Sobic004G275700 Sobic010G020400 Sobic010G020400 Sobic010G261600--Sobic010G020400 Sobic004G261600 Sobic004G261600 Sobic004G228800--Sobic004G261600 Sobic004G228800--Sobic010G261600 Sobic004G228800--Sobic004G323700 Sobic010G278200 Sobic010G278200 Sobic004G228800--Sobic010G278200 Sobic004G236200 Sobic004G236200 Sobic004G228800--Sobic004G236200 Sobic006G131000 Sobic006G131000 Sobic004G228800--Sobic006G131000 Sobic005G177700 Sobic005G177700 Sobic004G228800--Sobic005G177700 Sobic007G056600 Sobic007G056600 Sobic004G228800--Sobic007G056600 Sobic003G126300 Sobic003G126300 Sobic004G228800--Sobic003G126300 Sobic007G172200 Sobic007G172200 Sobic001G273700--Sobic007G172200 Sobic001G263600 Sobic001G263600 Sobic001G273700--Sobic001G263600 Sobic008G099800 Sobic008G099800 Sobic001G273700--Sobic008G099800 Sobic001G347500 Sobic001G347500 Sobic001G273700--Sobic001G347500 Sobic007G133700 Sobic007G133700 Sobic001G273700--Sobic007G133700 Sobic007G163100 Sobic007G163100 Sobic001G273700--Sobic007G163100 Sobic001G457900 Sobic001G457900 Sobic001G273700--Sobic001G457900 Sobic001G313700 Sobic001G313700 Sobic001G273700--Sobic001G313700 Sobic002G042600 Sobic002G042600 Sobic001G273700--Sobic002G042600 Sobic004G016000--Sobic004G351300 Sobic004G209800 Sobic004G209800 Sobic004G016000--Sobic004G209800 Sobic004G016000--Sobic010G072800 Sobic002G156000 Sobic002G156000 Sobic004G016000--Sobic002G156000 Sobic004G016000--Sobic005G059600 Sobic007G075500 Sobic007G075500 Sobic004G016000--Sobic007G075500 Sobic004G016000--Sobic002G270500 Sobic004G016000--Sobic009G133500 Sobic004G016000--Sobic003G089000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.