Gene annotation
Transcriptome id Sobic.006G237900.1
Synonym Sb06g030480
Functional annotation UBA/TS-N domain containing protein, expressed
UniProt C5Y907
Pfam PF00627
Panther DB PTHR12948 PTHR12948:SF3
NCBI CDD KOG2561; Adaptor protein NUB1, contains UBA domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G12550 : ubiquitin-associated (UBA)/TS-N domain-containing protein
RAP-DB (Rice) LOC_Os04g55150.2 : UBA/TS-N domain containing protein, expressed
MaizeGDB (Corn) Zm00025a009566
Brachypodium KQJ84922
Barley -
Wheat TraesCS2B02G546800 , TraesCS2A02G518400 , TraesCS2B02G546800 , TraesCS2D02G519800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
2 Sobic.004G351300 protein binding protein, putative, expressed -
3 Sobic.001G003000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
4 Sobic.005G059600 WD domain, G-beta repeat domain containing protein, expressed -
5 Sobic.010G129600 dual specificity protein phosphatase, putative, expressed K04459: DUSP, dual specificity MAP kinase phosphatase
6 Sobic.010G130200 BPI/LBP family protein At3g20270 precursor, putative, expressed K05399: lipopolysaccharide-binding protein
7 Sobic.010G043400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.001G089800 nuclear prelamin A recognition factor, putative, expressed -
9 Sobic.001G436900 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
10 Sobic.008G061100 expressed protein -
11 Sobic.007G205900 uvrB/uvrC motif family protein, expressed -
12 Sobic.004G102400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
13 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
14 Sobic.006G083600 expressed protein K10134: etoposide-induced 2.4 mRNA
15 Sobic.003G436300 expressed protein -
16 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
17 Sobic.001G298300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@autophagy-related protein 3, putative, expressed K08343: ubiquitin-like-conjugating enzyme ATG3
18 Sobic.002G270500 UBX domain-containing protein, putative, expressed -
19 Sobic.010G264200 UPF0183 protein, putative, expressed -
20 Sobic.006G125400 steroid nuclear receptor, ligand-binding, putative, expressed -


Gene co-expression network
sample Sobic006G237900 Sobic006G237900 Sobic006G271200 Sobic006G271200 Sobic006G237900--Sobic006G271200 Sobic004G351300 Sobic004G351300 Sobic006G237900--Sobic004G351300 Sobic001G003000 Sobic001G003000 Sobic006G237900--Sobic001G003000 Sobic005G059600 Sobic005G059600 Sobic006G237900--Sobic005G059600 Sobic010G129600 Sobic010G129600 Sobic006G237900--Sobic010G129600 Sobic010G130200 Sobic010G130200 Sobic006G237900--Sobic010G130200 Sobic010G043400 Sobic010G043400 Sobic006G237900--Sobic010G043400 Sobic001G089800 Sobic001G089800 Sobic006G237900--Sobic001G089800 Sobic001G436900 Sobic001G436900 Sobic006G237900--Sobic001G436900 Sobic006G271200--Sobic001G003000 Sobic006G271200--Sobic006G237900 Sobic009G126900 Sobic009G126900 Sobic006G271200--Sobic009G126900 Sobic006G271200--Sobic010G130200 Sobic006G271200--Sobic001G089800 Sobic006G271200--Sobic010G043400 Sobic006G271200--Sobic004G351300 Sobic006G271200--Sobic001G436900 Sobic010G072800 Sobic010G072800 Sobic006G271200--Sobic010G072800 Sobic004G351300--Sobic005G059600 Sobic004G016000 Sobic004G016000 Sobic004G351300--Sobic004G016000 Sobic004G351300--Sobic006G237900 Sobic004G351300--Sobic006G271200 Sobic003G101850 Sobic003G101850 Sobic004G351300--Sobic003G101850 Sobic004G351300--Sobic010G072800 Sobic006G126500 Sobic006G126500 Sobic004G351300--Sobic006G126500 Sobic004G351300--Sobic001G003000 Sobic003G089000 Sobic003G089000 Sobic004G351300--Sobic003G089000 Sobic001G003000--Sobic006G271200 Sobic001G003000--Sobic001G089800 Sobic001G003000--Sobic009G126900 Sobic004G102400 Sobic004G102400 Sobic001G003000--Sobic004G102400 Sobic001G003000--Sobic006G237900 Sobic003G005600 Sobic003G005600 Sobic001G003000--Sobic003G005600 Sobic001G003000--Sobic010G043400 Sobic009G193700 Sobic009G193700 Sobic001G003000--Sobic009G193700 Sobic001G350700 Sobic001G350700 Sobic001G003000--Sobic001G350700 Sobic005G059600--Sobic004G351300 Sobic005G059600--Sobic006G271200 Sobic002G270500 Sobic002G270500 Sobic005G059600--Sobic002G270500 Sobic005G059600--Sobic006G237900 Sobic004G177300 Sobic004G177300 Sobic005G059600--Sobic004G177300 Sobic010G261600 Sobic010G261600 Sobic005G059600--Sobic010G261600 Sobic004G228800 Sobic004G228800 Sobic005G059600--Sobic004G228800 Sobic001G273700 Sobic001G273700 Sobic005G059600--Sobic001G273700 Sobic005G059600--Sobic004G016000 Sobic001G005600 Sobic001G005600 Sobic010G129600--Sobic001G005600 Sobic001G161900 Sobic001G161900 Sobic010G129600--Sobic001G161900 Sobic001G313500 Sobic001G313500 Sobic010G129600--Sobic001G313500 Sobic010G129600--Sobic006G271200 Sobic004G091200 Sobic004G091200 Sobic010G129600--Sobic004G091200 Sobic010G129600--Sobic010G261600 Sobic009G160600 Sobic009G160600 Sobic010G129600--Sobic009G160600 Sobic010G129600--Sobic006G237900 Sobic008G061100 Sobic008G061100 Sobic010G129600--Sobic008G061100 Sobic006G083600 Sobic006G083600 Sobic010G130200--Sobic006G083600 Sobic001G111150 Sobic001G111150 Sobic010G130200--Sobic001G111150 Sobic003G305200 Sobic003G305200 Sobic010G130200--Sobic003G305200 Sobic010G130200--Sobic006G271200 Sobic010G130200--Sobic002G270500 Sobic010G264200 Sobic010G264200 Sobic010G130200--Sobic010G264200 Sobic003G354400 Sobic003G354400 Sobic010G130200--Sobic003G354400 Sobic007G024700 Sobic007G024700 Sobic010G130200--Sobic007G024700 Sobic005G203800 Sobic005G203800 Sobic010G130200--Sobic005G203800 Sobic010G043400--Sobic009G126900 Sobic004G124200 Sobic004G124200 Sobic010G043400--Sobic004G124200 Sobic002G009700 Sobic002G009700 Sobic010G043400--Sobic002G009700 Sobic010G018100 Sobic010G018100 Sobic010G043400--Sobic010G018100 Sobic003G355600 Sobic003G355600 Sobic010G043400--Sobic003G355600 Sobic010G043400--Sobic006G271200 Sobic010G107000 Sobic010G107000 Sobic010G043400--Sobic010G107000 Sobic006G204900 Sobic006G204900 Sobic010G043400--Sobic006G204900 Sobic006G125400 Sobic006G125400 Sobic010G043400--Sobic006G125400 Sobic001G089800--Sobic001G003000 Sobic004G341200 Sobic004G341200 Sobic001G089800--Sobic004G341200 Sobic001G089800--Sobic009G193700 Sobic001G089800--Sobic006G271200 Sobic009G167700 Sobic009G167700 Sobic001G089800--Sobic009G167700 Sobic002G244100 Sobic002G244100 Sobic001G089800--Sobic002G244100 Sobic001G089800--Sobic004G102400 Sobic010G064600 Sobic010G064600 Sobic001G089800--Sobic010G064600 Sobic001G089800--Sobic003G354400 Sobic004G331100 Sobic004G331100 Sobic001G436900--Sobic004G331100 Sobic003G320700 Sobic003G320700 Sobic001G436900--Sobic003G320700 Sobic004G065000 Sobic004G065000 Sobic001G436900--Sobic004G065000 Sobic001G436900--Sobic006G271200 Sobic001G436900--Sobic006G204900 Sobic007G075400 Sobic007G075400 Sobic001G436900--Sobic007G075400 Sobic009G113000 Sobic009G113000 Sobic001G436900--Sobic009G113000 Sobic002G382600 Sobic002G382600 Sobic001G436900--Sobic002G382600 Sobic001G436900--Sobic010G264200
Octagon: transcription factors


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