Gene annotation
Transcriptome id Sobic.004G102400.1
Synonym Sb04g008370
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
FYVE zinc finger domain containing protein, expressed
UniProt C5XYL4
Pfam PF01363 PF04366
Panther DB PTHR15629 PTHR15629:SF13
NCBI CDD KOG1843; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G29800 : RING/FYVE/PHD-type zinc finger family protein
RAP-DB (Rice) LOC_Os02g13890.1 : FYVE zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a051080 , Zm00025a020049 , Zm00025a034505
Brachypodium KQK18036 , KQJ94166
Barley -
Wheat TraesCS7B02G272800 , TraesCS7D02G367900 , TraesCS7A02G354900 , TraesCS7B02G272800
Populus -


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cDNA sequences
Sobic.004G102400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G338400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase NAK, putative, expressed -
2 Sobic.001G158500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LSD1 zinc finger domain containing protein, expressed -
3 Sobic.001G003000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
4 Sobic.009G167700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
5 Sobic.005G150800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@yippee zinc-binding protein, putative, expressed -
6 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
7 Sobic.001G089800 nuclear prelamin A recognition factor, putative, expressed -
8 Sobic.001G057800 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
9 Sobic.004G042300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.003G348400 ankyrin repeat-containing protein, putative, expressed -
11 Sobic.001G298300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@autophagy-related protein 3, putative, expressed K08343: ubiquitin-like-conjugating enzyme ATG3
12 Sobic.004G341200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
13 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
14 Sobic.002G375300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
15 Sobic.006G114800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ras-related protein, putative, expressed K07877: Ras-related protein Rab-2A
16 Sobic.009G236200 lectin-like receptor kinase 7, putative, expressed -
17 Sobic.007G125900 protein kinase domain containing protein, expressed -
18 Sobic.009G193700 transmembrane protein 56, putative, expressed -
19 Sobic.001G488500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"OsFBK12(Ortholog in rice:Chen et al., 2013)"(PubMedID : 31659851)@OsFBK12 - F-box domain and kelch repeat containing protein, expressed -
20 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -


Gene co-expression network
sample Sobic004G102400 Sobic004G102400 Sobic003G338400 Sobic003G338400 Sobic004G102400--Sobic003G338400 Sobic001G158500 Sobic001G158500 Sobic004G102400--Sobic001G158500 Sobic001G003000 Sobic001G003000 Sobic004G102400--Sobic001G003000 Sobic009G167700 Sobic009G167700 Sobic004G102400--Sobic009G167700 Sobic005G150800 Sobic005G150800 Sobic004G102400--Sobic005G150800 Sobic006G271200 Sobic006G271200 Sobic004G102400--Sobic006G271200 Sobic001G089800 Sobic001G089800 Sobic004G102400--Sobic001G089800 Sobic001G057800 Sobic001G057800 Sobic004G102400--Sobic001G057800 Sobic004G042300 Sobic004G042300 Sobic004G102400--Sobic004G042300 Sobic003G338400--Sobic004G102400 Sobic003G348400 Sobic003G348400 Sobic003G338400--Sobic003G348400 Sobic004G341200 Sobic004G341200 Sobic003G338400--Sobic004G341200 Sobic003G338400--Sobic009G167700 Sobic010G016400 Sobic010G016400 Sobic003G338400--Sobic010G016400 Sobic003G338400--Sobic001G003000 Sobic003G338400--Sobic001G158500 Sobic006G140000 Sobic006G140000 Sobic003G338400--Sobic006G140000 Sobic003G338400--Sobic001G089800 Sobic001G158500--Sobic004G102400 Sobic001G158500--Sobic001G057800 Sobic002G375300 Sobic002G375300 Sobic001G158500--Sobic002G375300 Sobic003G367451 Sobic003G367451 Sobic001G158500--Sobic003G367451 Sobic002G083266 Sobic002G083266 Sobic001G158500--Sobic002G083266 Sobic001G433400 Sobic001G433400 Sobic001G158500--Sobic001G433400 Sobic002G264400 Sobic002G264400 Sobic001G158500--Sobic002G264400 Sobic002G385900 Sobic002G385900 Sobic001G158500--Sobic002G385900 Sobic001G085900 Sobic001G085900 Sobic001G158500--Sobic001G085900 Sobic001G003000--Sobic006G271200 Sobic001G003000--Sobic001G089800 Sobic009G126900 Sobic009G126900 Sobic001G003000--Sobic009G126900 Sobic001G003000--Sobic004G102400 Sobic006G237900 Sobic006G237900 Sobic001G003000--Sobic006G237900 Sobic003G005600 Sobic003G005600 Sobic001G003000--Sobic003G005600 Sobic010G043400 Sobic010G043400 Sobic001G003000--Sobic010G043400 Sobic009G193700 Sobic009G193700 Sobic001G003000--Sobic009G193700 Sobic001G350700 Sobic001G350700 Sobic001G003000--Sobic001G350700 Sobic002G244100 Sobic002G244100 Sobic009G167700--Sobic002G244100 Sobic009G167700--Sobic004G341200 Sobic009G167700--Sobic004G102400 Sobic001G386400 Sobic001G386400 Sobic009G167700--Sobic001G386400 Sobic009G167700--Sobic010G016400 Sobic009G167700--Sobic001G089800 Sobic003G354400 Sobic003G354400 Sobic009G167700--Sobic003G354400 Sobic001G132000 Sobic001G132000 Sobic009G167700--Sobic001G132000 Sobic006G119200 Sobic006G119200 Sobic009G167700--Sobic006G119200 Sobic005G150800--Sobic004G102400 Sobic001G393800 Sobic001G393800 Sobic005G150800--Sobic001G393800 Sobic008G107500 Sobic008G107500 Sobic005G150800--Sobic008G107500 Sobic003G009100 Sobic003G009100 Sobic005G150800--Sobic003G009100 Sobic005G150800--Sobic009G167700 Sobic005G150800--Sobic001G057800 Sobic005G150800--Sobic003G354400 Sobic006G114800 Sobic006G114800 Sobic005G150800--Sobic006G114800 Sobic004G167400 Sobic004G167400 Sobic005G150800--Sobic004G167400 Sobic006G271200--Sobic001G003000 Sobic006G271200--Sobic006G237900 Sobic006G271200--Sobic009G126900 Sobic010G130200 Sobic010G130200 Sobic006G271200--Sobic010G130200 Sobic006G271200--Sobic001G089800 Sobic006G271200--Sobic010G043400 Sobic004G351300 Sobic004G351300 Sobic006G271200--Sobic004G351300 Sobic001G436900 Sobic001G436900 Sobic006G271200--Sobic001G436900 Sobic010G072800 Sobic010G072800 Sobic006G271200--Sobic010G072800 Sobic001G089800--Sobic001G003000 Sobic001G089800--Sobic004G341200 Sobic001G089800--Sobic009G193700 Sobic001G089800--Sobic006G271200 Sobic001G089800--Sobic009G167700 Sobic001G089800--Sobic002G244100 Sobic001G089800--Sobic004G102400 Sobic010G064600 Sobic010G064600 Sobic001G089800--Sobic010G064600 Sobic001G089800--Sobic003G354400 Sobic001G323000 Sobic001G323000 Sobic001G057800--Sobic001G323000 Sobic002G400000 Sobic002G400000 Sobic001G057800--Sobic002G400000 Sobic002G352700 Sobic002G352700 Sobic001G057800--Sobic002G352700 Sobic001G057800--Sobic002G385900 Sobic001G057800--Sobic001G158500 Sobic004G130900 Sobic004G130900 Sobic001G057800--Sobic004G130900 Sobic010G000900 Sobic010G000900 Sobic001G057800--Sobic010G000900 Sobic010G168600 Sobic010G168600 Sobic001G057800--Sobic010G168600 Sobic009G207000 Sobic009G207000 Sobic001G057800--Sobic009G207000 Sobic006G052100 Sobic006G052100 Sobic004G042300--Sobic006G052100 Sobic004G042300--Sobic009G193700 Sobic008G062200 Sobic008G062200 Sobic004G042300--Sobic008G062200 Sobic004G042300--Sobic004G102400 Sobic003G320700 Sobic003G320700 Sobic004G042300--Sobic003G320700 Sobic003G329400 Sobic003G329400 Sobic004G042300--Sobic003G329400 Sobic002G132000 Sobic002G132000 Sobic004G042300--Sobic002G132000 Sobic004G042300--Sobic001G089800 Sobic001G290000 Sobic001G290000 Sobic004G042300--Sobic001G290000
Octagon: transcription factors


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