Gene annotation
Transcriptome id Sobic.004G042300.1
Synonym Sb04g003670
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt C5XUQ3
Pfam PF07800
Panther DB PTHR31197 PTHR31197:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G31410 : Protein of unknown function (DUF1644)
RAP-DB (Rice) LOC_Os02g05710.1 : expressed protein
MaizeGDB (Corn) Zm00025a041823 , Zm00025a018269
Brachypodium KQJ93358 , PNT65891
Barley HORVU7Hr1G099070.2 , HORVU7Hr1G099070.3 , HORVU7Hr1G099070.6 , HORVU7Hr1G099070.7 , HORVU7Hr1G099070.4 , HORVU7Hr1G099070.5
Wheat TraesCS7B02G332200 , TraesCS6A02G121600
Populus -


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cDNA sequences
Sobic.004G042300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G052100 nodulin, putative, expressed -
2 Sobic.009G193700 transmembrane protein 56, putative, expressed -
3 Sobic.008G062200 dehydrogenase E1 component domain containing protein, expressed K00166: BCKDHA, 2-oxoisovalerate dehydrogenase E1 component alpha subunit
4 Sobic.004G102400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
5 Sobic.003G320700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
7 Sobic.002G132000 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
8 Sobic.001G089800 nuclear prelamin A recognition factor, putative, expressed -
9 Sobic.001G290000 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
10 Sobic.001G003000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
11 Sobic.004G053700 glyoxalase family protein, putative, expressed K00457: HPD, 4-hydroxyphenylpyruvate dioxygenase
12 Sobic.002G375300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
13 Sobic.010G169000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Multi-drugresistance-associated protein 6(PubMedID : 26320239)@ABC transporter, ATP-binding protein, putative, expressed -
14 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
15 Sobic.006G147700 L-allo-threonine aldolase, putative, expressed K01620: threonine aldolase
16 Sobic.002G244100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.001G436900 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
18 Sobic.002G009700 AMP-binding domain containing protein, expressed -
19 Sobic.003G228100 cytochrome P450 72A1, putative, expressed -
20 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -


Gene co-expression network
sample Sobic004G042300 Sobic004G042300 Sobic006G052100 Sobic006G052100 Sobic004G042300--Sobic006G052100 Sobic009G193700 Sobic009G193700 Sobic004G042300--Sobic009G193700 Sobic008G062200 Sobic008G062200 Sobic004G042300--Sobic008G062200 Sobic004G102400 Sobic004G102400 Sobic004G042300--Sobic004G102400 Sobic003G320700 Sobic003G320700 Sobic004G042300--Sobic003G320700 Sobic003G329400 Sobic003G329400 Sobic004G042300--Sobic003G329400 Sobic002G132000 Sobic002G132000 Sobic004G042300--Sobic002G132000 Sobic001G089800 Sobic001G089800 Sobic004G042300--Sobic001G089800 Sobic001G290000 Sobic001G290000 Sobic004G042300--Sobic001G290000 Sobic006G052100--Sobic004G042300 Sobic006G052100--Sobic003G329400 Sobic003G305200 Sobic003G305200 Sobic006G052100--Sobic003G305200 Sobic006G052100--Sobic009G193700 Sobic006G052100--Sobic008G062200 Sobic001G447500 Sobic001G447500 Sobic006G052100--Sobic001G447500 Sobic006G214500 Sobic006G214500 Sobic006G052100--Sobic006G214500 Sobic007G219900 Sobic007G219900 Sobic006G052100--Sobic007G219900 Sobic003G401200 Sobic003G401200 Sobic006G052100--Sobic003G401200 Sobic010G107000 Sobic010G107000 Sobic009G193700--Sobic010G107000 Sobic009G193700--Sobic008G062200 Sobic009G211400 Sobic009G211400 Sobic009G193700--Sobic009G211400 Sobic003G355600 Sobic003G355600 Sobic009G193700--Sobic003G355600 Sobic009G029600 Sobic009G029600 Sobic009G193700--Sobic009G029600 Sobic004G260000 Sobic004G260000 Sobic009G193700--Sobic004G260000 Sobic003G219600 Sobic003G219600 Sobic009G193700--Sobic003G219600 Sobic006G199000 Sobic006G199000 Sobic009G193700--Sobic006G199000 Sobic009G193700--Sobic001G089800 Sobic008G062200--Sobic003G355600 Sobic009G226300 Sobic009G226300 Sobic008G062200--Sobic009G226300 Sobic002G304000 Sobic002G304000 Sobic008G062200--Sobic002G304000 Sobic009G054500 Sobic009G054500 Sobic008G062200--Sobic009G054500 Sobic008G062200--Sobic004G260000 Sobic001G325200 Sobic001G325200 Sobic008G062200--Sobic001G325200 Sobic004G101900 Sobic004G101900 Sobic008G062200--Sobic004G101900 Sobic008G062200--Sobic009G193700 Sobic003G148800 Sobic003G148800 Sobic008G062200--Sobic003G148800 Sobic003G338400 Sobic003G338400 Sobic004G102400--Sobic003G338400 Sobic001G158500 Sobic001G158500 Sobic004G102400--Sobic001G158500 Sobic001G003000 Sobic001G003000 Sobic004G102400--Sobic001G003000 Sobic009G167700 Sobic009G167700 Sobic004G102400--Sobic009G167700 Sobic005G150800 Sobic005G150800 Sobic004G102400--Sobic005G150800 Sobic006G271200 Sobic006G271200 Sobic004G102400--Sobic006G271200 Sobic004G102400--Sobic001G089800 Sobic001G057800 Sobic001G057800 Sobic004G102400--Sobic001G057800 Sobic004G102400--Sobic004G042300 Sobic003G301900 Sobic003G301900 Sobic003G320700--Sobic003G301900 Sobic006G104600 Sobic006G104600 Sobic003G320700--Sobic006G104600 Sobic001G517800 Sobic001G517800 Sobic003G320700--Sobic001G517800 Sobic001G436900 Sobic001G436900 Sobic003G320700--Sobic001G436900 Sobic007G075400 Sobic007G075400 Sobic003G320700--Sobic007G075400 Sobic006G204900 Sobic006G204900 Sobic003G320700--Sobic006G204900 Sobic006G087700 Sobic006G087700 Sobic003G320700--Sobic006G087700 Sobic003G322700 Sobic003G322700 Sobic003G320700--Sobic003G322700 Sobic003G320700--Sobic009G193700 Sobic001G322700 Sobic001G322700 Sobic003G329400--Sobic001G322700 Sobic003G329400--Sobic008G062200 Sobic003G329400--Sobic001G325200 Sobic003G329400--Sobic010G107000 Sobic003G329400--Sobic002G304000 Sobic007G068100 Sobic007G068100 Sobic003G329400--Sobic007G068100 Sobic003G329400--Sobic009G226300 Sobic003G329400--Sobic003G148800 Sobic003G354400 Sobic003G354400 Sobic003G329400--Sobic003G354400 Sobic004G006200 Sobic004G006200 Sobic002G132000--Sobic004G006200 Sobic004G264400 Sobic004G264400 Sobic002G132000--Sobic004G264400 Sobic007G024700 Sobic007G024700 Sobic002G132000--Sobic007G024700 Sobic004G295800 Sobic004G295800 Sobic002G132000--Sobic004G295800 Sobic001G109800 Sobic001G109800 Sobic002G132000--Sobic001G109800 Sobic002G132000--Sobic001G290000 Sobic009G113000 Sobic009G113000 Sobic002G132000--Sobic009G113000 Sobic002G132000--Sobic003G305200 Sobic001G137100 Sobic001G137100 Sobic002G132000--Sobic001G137100 Sobic001G089800--Sobic001G003000 Sobic004G341200 Sobic004G341200 Sobic001G089800--Sobic004G341200 Sobic001G089800--Sobic009G193700 Sobic001G089800--Sobic006G271200 Sobic001G089800--Sobic009G167700 Sobic002G244100 Sobic002G244100 Sobic001G089800--Sobic002G244100 Sobic001G089800--Sobic004G102400 Sobic010G064600 Sobic010G064600 Sobic001G089800--Sobic010G064600 Sobic001G089800--Sobic003G354400 Sobic001G224600 Sobic001G224600 Sobic001G290000--Sobic001G224600 Sobic001G290000--Sobic007G024700 Sobic001G290000--Sobic002G132000 Sobic001G290000--Sobic004G295800 Sobic008G191100 Sobic008G191100 Sobic001G290000--Sobic008G191100 Sobic001G290000--Sobic004G264400 Sobic002G419800 Sobic002G419800 Sobic001G290000--Sobic002G419800 Sobic001G290000--Sobic001G137100 Sobic009G249200 Sobic009G249200 Sobic001G290000--Sobic009G249200
Octagon: transcription factors


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