Gene annotation
Transcriptome id Sobic.004G053700.1
Synonym HPD, Sb04g004560, PDS1
Functional annotation glyoxalase family protein, putative, expressed
UniProt C5XVJ3
Pfam PF00903
Panther DB PTHR11959 PTHR11959:SF7
NCBI CDD KOG0638; 4-hydroxyphenylpyruvate dioxygenase
KEGG Orthology K00457; HPD, 4-hydroxyphenylpyruvate dioxygenase
Gene Ontology GO:0016701; oxidoreductase activity, acting on single donors with incorporation of molecular oxygen GO:0009072aromatic amino acid family metabolic process GO:00038684-hydroxyphenylpyruvate dioxygenase activity


Orthologs (automatic annotation)
TAIR AT1G06570 : phytoene desaturation 1
RAP-DB (Rice) LOC_Os02g07160.1 : glyoxalase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a045590 , Zm00025a019061
Brachypodium KQJ93508 , KQJ87482
Barley HORVU6Hr1G027650.10 , HORVU6Hr1G027650.11 , HORVU6Hr1G027650.12 , HORVU6Hr1G027650.13 , HORVU6Hr1G027650.8 , HORVU6Hr1G027650.9 , HORVU6Hr1G027650.2 , HORVU6Hr1G027650.3 , HORVU6Hr1G027650.6 , HORVU6Hr1G027650.7 , HORVU6Hr1G027650.5
Wheat TraesCS6D02G130800 , TraesCS6B02G169700 , TraesCS1B02G004200 , TraesCS1B02G004200 , TraesCS6A02G141500 , TraesCS6A02G141500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G087700 T-complex protein 11, putative, expressed -
2 Sobic.002G230100 carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
3 Sobic.003G322700 expressed protein -
4 Sobic.004G042300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.007G075400 expressed protein -
6 Sobic.010G169000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Multi-drugresistance-associated protein 6(PubMedID : 26320239)@ABC transporter, ATP-binding protein, putative, expressed -
7 Sobic.003G320700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4
9 Sobic.002G009700 AMP-binding domain containing protein, expressed -
10 Sobic.001G507300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.003G372500 DUF803 domain containing, putative, expressed -
12 Sobic.002G419800 structural constituent of ribosome, putative, expressed -
13 Sobic.001G290000 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
14 Sobic.004G349400 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.003G301900 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
16 Sobic.001G290100 expressed protein -
17 Sobic.010G153700 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
18 Sobic.003G355600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
19 Sobic.006G233500 transcription factor, putative, expressed K14431: transcription factor TGA
20 Sobic.006G104600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic004G053700 Sobic004G053700 Sobic006G087700 Sobic006G087700 Sobic004G053700--Sobic006G087700 Sobic002G230100 Sobic002G230100 Sobic004G053700--Sobic002G230100 Sobic003G322700 Sobic003G322700 Sobic004G053700--Sobic003G322700 Sobic004G042300 Sobic004G042300 Sobic004G053700--Sobic004G042300 Sobic007G075400 Sobic007G075400 Sobic004G053700--Sobic007G075400 Sobic010G169000 Sobic010G169000 Sobic004G053700--Sobic010G169000 Sobic003G320700 Sobic003G320700 Sobic004G053700--Sobic003G320700 Sobic004G331100 Sobic004G331100 Sobic004G053700--Sobic004G331100 Sobic002G009700 Sobic002G009700 Sobic004G053700--Sobic002G009700 Sobic006G087700--Sobic007G075400 Sobic006G087700--Sobic003G322700 Sobic006G233500 Sobic006G233500 Sobic006G087700--Sobic006G233500 Sobic010G139600 Sobic010G139600 Sobic006G087700--Sobic010G139600 Sobic003G301900 Sobic003G301900 Sobic006G087700--Sobic003G301900 Sobic006G087700--Sobic003G320700 Sobic006G204900 Sobic006G204900 Sobic006G087700--Sobic006G204900 Sobic002G128200 Sobic002G128200 Sobic006G087700--Sobic002G128200 Sobic006G043600 Sobic006G043600 Sobic006G087700--Sobic006G043600 Sobic002G230100--Sobic004G053700 Sobic004G183600 Sobic004G183600 Sobic002G230100--Sobic004G183600 Sobic002G399100 Sobic002G399100 Sobic002G230100--Sobic002G399100 Sobic010G153700 Sobic010G153700 Sobic002G230100--Sobic010G153700 Sobic001G270400 Sobic001G270400 Sobic002G230100--Sobic001G270400 Sobic002G116900 Sobic002G116900 Sobic002G230100--Sobic002G116900 Sobic001G056601 Sobic001G056601 Sobic002G230100--Sobic001G056601 Sobic001G137100 Sobic001G137100 Sobic002G230100--Sobic001G137100 Sobic001G383300 Sobic001G383300 Sobic002G230100--Sobic001G383300 Sobic002G266000 Sobic002G266000 Sobic003G322700--Sobic002G266000 Sobic003G322700--Sobic006G204900 Sobic010G001500 Sobic010G001500 Sobic003G322700--Sobic010G001500 Sobic004G355000 Sobic004G355000 Sobic003G322700--Sobic004G355000 Sobic001G207400 Sobic001G207400 Sobic003G322700--Sobic001G207400 Sobic003G355600 Sobic003G355600 Sobic003G322700--Sobic003G355600 Sobic003G322700--Sobic006G087700 Sobic006G199000 Sobic006G199000 Sobic003G322700--Sobic006G199000 Sobic004G034600 Sobic004G034600 Sobic003G322700--Sobic004G034600 Sobic006G052100 Sobic006G052100 Sobic004G042300--Sobic006G052100 Sobic009G193700 Sobic009G193700 Sobic004G042300--Sobic009G193700 Sobic008G062200 Sobic008G062200 Sobic004G042300--Sobic008G062200 Sobic004G102400 Sobic004G102400 Sobic004G042300--Sobic004G102400 Sobic004G042300--Sobic003G320700 Sobic003G329400 Sobic003G329400 Sobic004G042300--Sobic003G329400 Sobic002G132000 Sobic002G132000 Sobic004G042300--Sobic002G132000 Sobic001G089800 Sobic001G089800 Sobic004G042300--Sobic001G089800 Sobic001G290000 Sobic001G290000 Sobic004G042300--Sobic001G290000 Sobic007G075400--Sobic010G139600 Sobic009G053900 Sobic009G053900 Sobic007G075400--Sobic009G053900 Sobic007G075400--Sobic004G331100 Sobic002G008900 Sobic002G008900 Sobic007G075400--Sobic002G008900 Sobic009G191000 Sobic009G191000 Sobic007G075400--Sobic009G191000 Sobic002G146300 Sobic002G146300 Sobic007G075400--Sobic002G146300 Sobic003G422500 Sobic003G422500 Sobic007G075400--Sobic003G422500 Sobic003G313500 Sobic003G313500 Sobic007G075400--Sobic003G313500 Sobic004G065000 Sobic004G065000 Sobic007G075400--Sobic004G065000 Sobic004G329300 Sobic004G329300 Sobic010G169000--Sobic004G329300 Sobic007G210500 Sobic007G210500 Sobic010G169000--Sobic007G210500 Sobic001G282600 Sobic001G282600 Sobic010G169000--Sobic001G282600 Sobic010G169000--Sobic004G042300 Sobic001G217400 Sobic001G217400 Sobic010G169000--Sobic001G217400 Sobic010G169000--Sobic004G053700 Sobic006G214200 Sobic006G214200 Sobic010G169000--Sobic006G214200 Sobic010G107000 Sobic010G107000 Sobic010G169000--Sobic010G107000 Sobic010G169000--Sobic003G355600 Sobic003G320700--Sobic003G301900 Sobic006G104600 Sobic006G104600 Sobic003G320700--Sobic006G104600 Sobic001G517800 Sobic001G517800 Sobic003G320700--Sobic001G517800 Sobic001G436900 Sobic001G436900 Sobic003G320700--Sobic001G436900 Sobic003G320700--Sobic007G075400 Sobic003G320700--Sobic006G204900 Sobic003G320700--Sobic006G087700 Sobic003G320700--Sobic003G322700 Sobic003G320700--Sobic009G193700 Sobic004G331100--Sobic007G075400 Sobic009G027300 Sobic009G027300 Sobic004G331100--Sobic009G027300 Sobic002G419800 Sobic002G419800 Sobic004G331100--Sobic002G419800 Sobic003G101400 Sobic003G101400 Sobic004G331100--Sobic003G101400 Sobic001G290100 Sobic001G290100 Sobic004G331100--Sobic001G290100 Sobic001G050200 Sobic001G050200 Sobic004G331100--Sobic001G050200 Sobic004G347400 Sobic004G347400 Sobic004G331100--Sobic004G347400 Sobic003G118200 Sobic003G118200 Sobic004G331100--Sobic003G118200 Sobic004G331100--Sobic004G065000 Sobic002G009700--Sobic003G355600 Sobic009G126900 Sobic009G126900 Sobic002G009700--Sobic009G126900 Sobic010G043400 Sobic010G043400 Sobic002G009700--Sobic010G043400 Sobic002G009700--Sobic008G062200 Sobic002G009700--Sobic003G322700 Sobic002G009700--Sobic003G329400 Sobic002G009700--Sobic006G204900 Sobic002G009700--Sobic009G193700 Sobic007G024700 Sobic007G024700 Sobic002G009700--Sobic007G024700
Octagon: transcription factors


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