Gene annotation
Transcriptome id Sobic.003G301900.2
Synonym CDS2, Sb03g035100
Functional annotation phosphatidate cytidylyltransferase, putative, expressed
UniProt C5XKS6
Pfam PF01148
Panther DB PTHR13773 PTHR13773:SF9
NCBI CDD -
KEGG Orthology K00981; E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G22340 : cytidinediphosphate diacylglycerol synthase 2
RAP-DB (Rice) LOC_Os01g55360.2 : phosphatidate cytidylyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a039989
Brachypodium KQK12637 , KQK09825 , KQK09826 , KQK09827
Barley HORVU1Hr1G001800.1 , HORVU1Hr1G001800.2 , HORVU1Hr1G001800.3 , HORVU1Hr1G001800.4 , HORVU3Hr1G073040.17 , HORVU3Hr1G073040.16 , HORVU3Hr1G073040.15 , HORVU3Hr1G073040.14 , HORVU3Hr1G073040.13 , HORVU3Hr1G073040.12 , HORVU3Hr1G073040.11 , HORVU3Hr1G073040.10 , HORVU3Hr1G073040.19 , HORVU3Hr1G073040.18 , HORVU3Hr1G073040.9 , HORVU3Hr1G073040.8 , HORVU3Hr1G073040.7 , HORVU3Hr1G073040.6 , HORVU3Hr1G073040.5 , HORVU3Hr1G073040.4 , HORVU3Hr1G073040.3 , HORVU3Hr1G073040.2 , HORVU3Hr1G073040.1 , HORVU3Hr1G073040.24 , HORVU3Hr1G073040.25 , HORVU3Hr1G073040.22 , HORVU3Hr1G073040.23 , HORVU3Hr1G073040.20 , HORVU3Hr1G073040.21
Wheat TraesCS1B02G021300 , TraesCS1B02G021300 , TraesCS3B02G329900 , TraesCS1B02G021300 , TraesCS1B02G021300 , TraesCS3D02G295300 , TraesCS3D02G295300 , TraesCS1D02G016500 , TraesCS1D02G016500 , TraesCS3A02G306600 , TraesCS1A02G016900 , TraesCS1A02G016900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
2 Sobic.001G517800 NIN, putative, expressed -
3 Sobic.010G139600 STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
4 Sobic.003G190400 rossmann fold nucleotide-binding protein involved in DNA uptake, putative, expressed -
5 Sobic.005G149200 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
6 Sobic.003G320700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
8 Sobic.006G087700 T-complex protein 11, putative, expressed -
9 Sobic.007G190000 expressed protein -
10 Sobic.003G198800 myosin, putative, expressed K10357: myosin V
11 Sobic.003G317500 acyltransferase, putative, expressed K13513: LCLAT1, lysocardiolipin and lysophospholipid acyltransferase
12 Sobic.010G020800 aminotransferase, classes I and II, domain containing protein, expressed K14270: aminotransferase
13 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
14 Sobic.007G075400 expressed protein -
15 Sobic.006G002300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
17 Sobic.002G128200 Regulator of chromosome condensation (RCC1) family protein(PubMedID : 26465154)@Regulator of chromosome condensation domain containing protein, expressed -
18 Sobic.009G011600 expressed protein -
19 Sobic.007G198300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
20 Sobic.002G129400 ABC transporter, ATP-binding protein, putative, expressed -


Gene co-expression network
sample Sobic003G301900 Sobic003G301900 Sobic002G146300 Sobic002G146300 Sobic003G301900--Sobic002G146300 Sobic001G517800 Sobic001G517800 Sobic003G301900--Sobic001G517800 Sobic010G139600 Sobic010G139600 Sobic003G301900--Sobic010G139600 Sobic003G190400 Sobic003G190400 Sobic003G301900--Sobic003G190400 Sobic005G149200 Sobic005G149200 Sobic003G301900--Sobic005G149200 Sobic003G320700 Sobic003G320700 Sobic003G301900--Sobic003G320700 Sobic006G219600 Sobic006G219600 Sobic003G301900--Sobic006G219600 Sobic006G087700 Sobic006G087700 Sobic003G301900--Sobic006G087700 Sobic007G190000 Sobic007G190000 Sobic003G301900--Sobic007G190000 Sobic003G205200 Sobic003G205200 Sobic002G146300--Sobic003G205200 Sobic001G370900 Sobic001G370900 Sobic002G146300--Sobic001G370900 Sobic002G146300--Sobic010G139600 Sobic005G001000 Sobic005G001000 Sobic002G146300--Sobic005G001000 Sobic004G001500 Sobic004G001500 Sobic002G146300--Sobic004G001500 Sobic008G001200 Sobic008G001200 Sobic002G146300--Sobic008G001200 Sobic001G194200 Sobic001G194200 Sobic002G146300--Sobic001G194200 Sobic007G075400 Sobic007G075400 Sobic002G146300--Sobic007G075400 Sobic009G256400 Sobic009G256400 Sobic002G146300--Sobic009G256400 Sobic001G459600 Sobic001G459600 Sobic001G517800--Sobic001G459600 Sobic001G517800--Sobic003G301900 Sobic004G034600 Sobic004G034600 Sobic001G517800--Sobic004G034600 Sobic010G020800 Sobic010G020800 Sobic001G517800--Sobic010G020800 Sobic009G011600 Sobic009G011600 Sobic001G517800--Sobic009G011600 Sobic001G517800--Sobic005G149200 Sobic001G517800--Sobic003G320700 Sobic003G322700 Sobic003G322700 Sobic001G517800--Sobic003G322700 Sobic001G517800--Sobic002G146300 Sobic010G139600--Sobic007G075400 Sobic010G139600--Sobic002G146300 Sobic010G139600--Sobic003G205200 Sobic008G098900 Sobic008G098900 Sobic010G139600--Sobic008G098900 Sobic003G313500 Sobic003G313500 Sobic010G139600--Sobic003G313500 Sobic010G139600--Sobic005G001000 Sobic010G139600--Sobic001G194200 Sobic003G422500 Sobic003G422500 Sobic010G139600--Sobic003G422500 Sobic010G139600--Sobic001G370900 Sobic003G190400--Sobic010G020800 Sobic003G190400--Sobic003G301900 Sobic002G187700 Sobic002G187700 Sobic003G190400--Sobic002G187700 Sobic005G084500 Sobic005G084500 Sobic003G190400--Sobic005G084500 Sobic003G190400--Sobic007G190000 Sobic004G356700 Sobic004G356700 Sobic003G190400--Sobic004G356700 Sobic003G190400--Sobic002G146300 Sobic004G169000 Sobic004G169000 Sobic003G190400--Sobic004G169000 Sobic006G002300 Sobic006G002300 Sobic003G190400--Sobic006G002300 Sobic001G375100 Sobic001G375100 Sobic005G149200--Sobic001G375100 Sobic005G149200--Sobic006G219600 Sobic001G454500 Sobic001G454500 Sobic005G149200--Sobic001G454500 Sobic006G133900 Sobic006G133900 Sobic005G149200--Sobic006G133900 Sobic005G149200--Sobic003G301900 Sobic005G149200--Sobic001G517800 Sobic001G333800 Sobic001G333800 Sobic005G149200--Sobic001G333800 Sobic007G090403 Sobic007G090403 Sobic005G149200--Sobic007G090403 Sobic003G155100 Sobic003G155100 Sobic005G149200--Sobic003G155100 Sobic003G320700--Sobic003G301900 Sobic006G104600 Sobic006G104600 Sobic003G320700--Sobic006G104600 Sobic003G320700--Sobic001G517800 Sobic001G436900 Sobic001G436900 Sobic003G320700--Sobic001G436900 Sobic003G320700--Sobic007G075400 Sobic006G204900 Sobic006G204900 Sobic003G320700--Sobic006G204900 Sobic003G320700--Sobic006G087700 Sobic003G320700--Sobic003G322700 Sobic009G193700 Sobic009G193700 Sobic003G320700--Sobic009G193700 Sobic006G219600--Sobic003G155100 Sobic009G201300 Sobic009G201300 Sobic006G219600--Sobic009G201300 Sobic002G124600 Sobic002G124600 Sobic006G219600--Sobic002G124600 Sobic006G050700 Sobic006G050700 Sobic006G219600--Sobic006G050700 Sobic001G298900 Sobic001G298900 Sobic006G219600--Sobic001G298900 Sobic006G219600--Sobic006G133900 Sobic001G133000 Sobic001G133000 Sobic006G219600--Sobic001G133000 Sobic005G106600 Sobic005G106600 Sobic006G219600--Sobic005G106600 Sobic006G219600--Sobic005G084500 Sobic006G087700--Sobic007G075400 Sobic006G087700--Sobic003G322700 Sobic006G233500 Sobic006G233500 Sobic006G087700--Sobic006G233500 Sobic006G087700--Sobic010G139600 Sobic006G087700--Sobic003G301900 Sobic006G087700--Sobic003G320700 Sobic006G087700--Sobic006G204900 Sobic002G128200 Sobic002G128200 Sobic006G087700--Sobic002G128200 Sobic006G043600 Sobic006G043600 Sobic006G087700--Sobic006G043600 Sobic010G074300 Sobic010G074300 Sobic007G190000--Sobic010G074300 Sobic004G179300 Sobic004G179300 Sobic007G190000--Sobic004G179300 Sobic003G372500 Sobic003G372500 Sobic007G190000--Sobic003G372500 Sobic010G227100 Sobic010G227100 Sobic007G190000--Sobic010G227100 Sobic007G190000--Sobic002G146300 Sobic007G190000--Sobic010G020800 Sobic009G074400 Sobic009G074400 Sobic007G190000--Sobic009G074400 Sobic010G147100 Sobic010G147100 Sobic007G190000--Sobic010G147100 Sobic004G189200 Sobic004G189200 Sobic007G190000--Sobic004G189200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.