Gene annotation
Transcriptome id Sobic.001G517800.2,Sobic.001G517800.1
Synonym Sb01g048290
Functional annotation NIN, putative, expressed
UniProt A0A1Z5SBK9 , C5WZW2
Pfam PF00564 PF02042 PF02042
Panther DB PTHR32002 PTHR32002:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G76350 : Plant regulator RWP-RK family protein
RAP-DB (Rice) LOC_Os03g03900.1 : NIN, putative, expressed
MaizeGDB (Corn) Zm00025a000435
Brachypodium KQK23817 , KQK23816 , KQK23819 , KQK23818 , PNT78260
Barley HORVU4Hr1G082110.2 , HORVU4Hr1G082110.3 , HORVU4Hr1G082110.1 , HORVU4Hr1G082110.6 , HORVU4Hr1G082110.4 , HORVU4Hr1G082110.5
Wheat TraesCS5A02G497800 , TraesCS4B02G325500 , TraesCS4B02G325500 , TraesCS4D02G322400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G459600 expressed protein -
2 Sobic.003G301900 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
3 Sobic.004G034600 hydrolase, alpha/beta fold family domain containing protein, expressed -
4 Sobic.010G020800 aminotransferase, classes I and II, domain containing protein, expressed K14270: aminotransferase
5 Sobic.009G011600 expressed protein -
6 Sobic.005G149200 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
7 Sobic.003G320700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.003G322700 expressed protein -
9 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
10 Sobic.003G317500 acyltransferase, putative, expressed K13513: LCLAT1, lysocardiolipin and lysophospholipid acyltransferase
11 Sobic.002G128200 Regulator of chromosome condensation (RCC1) family protein(PubMedID : 26465154)@Regulator of chromosome condensation domain containing protein, expressed -
12 Sobic.006G087700 T-complex protein 11, putative, expressed -
13 Sobic.004G261900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@diacylglycerol O-acyltransferase, putative, expressed K14457: MOGAT2, 2-acylglycerol O-acyltransferase 2
14 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
15 Sobic.004G143475 - -
16 Sobic.010G139600 STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
17 Sobic.005G149700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
18 Sobic.001G223550 - -
19 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
20 Sobic.008G166550 - -


Gene co-expression network
sample Sobic001G517800 Sobic001G517800 Sobic001G459600 Sobic001G459600 Sobic001G517800--Sobic001G459600 Sobic003G301900 Sobic003G301900 Sobic001G517800--Sobic003G301900 Sobic004G034600 Sobic004G034600 Sobic001G517800--Sobic004G034600 Sobic010G020800 Sobic010G020800 Sobic001G517800--Sobic010G020800 Sobic009G011600 Sobic009G011600 Sobic001G517800--Sobic009G011600 Sobic005G149200 Sobic005G149200 Sobic001G517800--Sobic005G149200 Sobic003G320700 Sobic003G320700 Sobic001G517800--Sobic003G320700 Sobic003G322700 Sobic003G322700 Sobic001G517800--Sobic003G322700 Sobic002G146300 Sobic002G146300 Sobic001G517800--Sobic002G146300 Sobic001G459600--Sobic001G517800 Sobic001G000501 Sobic001G000501 Sobic001G459600--Sobic001G000501 Sobic001G459600--Sobic004G034600 Sobic001G000700 Sobic001G000700 Sobic001G459600--Sobic001G000700 Sobic002G418800 Sobic002G418800 Sobic001G459600--Sobic002G418800 Sobic008G084300 Sobic008G084300 Sobic001G459600--Sobic008G084300 Sobic008G166550 Sobic008G166550 Sobic001G459600--Sobic008G166550 Sobic001G223550 Sobic001G223550 Sobic001G459600--Sobic001G223550 Sobic005G133600 Sobic005G133600 Sobic001G459600--Sobic005G133600 Sobic003G301900--Sobic002G146300 Sobic003G301900--Sobic001G517800 Sobic010G139600 Sobic010G139600 Sobic003G301900--Sobic010G139600 Sobic003G190400 Sobic003G190400 Sobic003G301900--Sobic003G190400 Sobic003G301900--Sobic005G149200 Sobic003G301900--Sobic003G320700 Sobic006G219600 Sobic006G219600 Sobic003G301900--Sobic006G219600 Sobic006G087700 Sobic006G087700 Sobic003G301900--Sobic006G087700 Sobic007G190000 Sobic007G190000 Sobic003G301900--Sobic007G190000 Sobic005G149700 Sobic005G149700 Sobic004G034600--Sobic005G149700 Sobic002G249300 Sobic002G249300 Sobic004G034600--Sobic002G249300 Sobic004G034600--Sobic001G517800 Sobic004G034600--Sobic009G011600 Sobic002G266000 Sobic002G266000 Sobic004G034600--Sobic002G266000 Sobic004G034600--Sobic001G459600 Sobic004G034600--Sobic003G322700 Sobic004G034600--Sobic001G223550 Sobic004G261900 Sobic004G261900 Sobic004G034600--Sobic004G261900 Sobic010G020800--Sobic003G190400 Sobic010G020800--Sobic001G517800 Sobic004G001500 Sobic004G001500 Sobic010G020800--Sobic004G001500 Sobic010G020800--Sobic007G190000 Sobic010G020800--Sobic002G146300 Sobic010G020800--Sobic003G301900 Sobic010G020800--Sobic009G011600 Sobic001G446850 Sobic001G446850 Sobic010G020800--Sobic001G446850 Sobic006G240400 Sobic006G240400 Sobic010G020800--Sobic006G240400 Sobic009G011600--Sobic004G034600 Sobic009G011600--Sobic001G517800 Sobic001G496100 Sobic001G496100 Sobic009G011600--Sobic001G496100 Sobic009G011600--Sobic005G149700 Sobic009G011600--Sobic010G020800 Sobic007G169300 Sobic007G169300 Sobic009G011600--Sobic007G169300 Sobic009G011600--Sobic002G249300 Sobic009G011600--Sobic005G149200 Sobic010G043100 Sobic010G043100 Sobic009G011600--Sobic010G043100 Sobic001G375100 Sobic001G375100 Sobic005G149200--Sobic001G375100 Sobic005G149200--Sobic006G219600 Sobic001G454500 Sobic001G454500 Sobic005G149200--Sobic001G454500 Sobic006G133900 Sobic006G133900 Sobic005G149200--Sobic006G133900 Sobic005G149200--Sobic003G301900 Sobic005G149200--Sobic001G517800 Sobic001G333800 Sobic001G333800 Sobic005G149200--Sobic001G333800 Sobic007G090403 Sobic007G090403 Sobic005G149200--Sobic007G090403 Sobic003G155100 Sobic003G155100 Sobic005G149200--Sobic003G155100 Sobic003G320700--Sobic003G301900 Sobic006G104600 Sobic006G104600 Sobic003G320700--Sobic006G104600 Sobic003G320700--Sobic001G517800 Sobic001G436900 Sobic001G436900 Sobic003G320700--Sobic001G436900 Sobic007G075400 Sobic007G075400 Sobic003G320700--Sobic007G075400 Sobic006G204900 Sobic006G204900 Sobic003G320700--Sobic006G204900 Sobic003G320700--Sobic006G087700 Sobic003G320700--Sobic003G322700 Sobic009G193700 Sobic009G193700 Sobic003G320700--Sobic009G193700 Sobic003G322700--Sobic002G266000 Sobic003G322700--Sobic006G204900 Sobic010G001500 Sobic010G001500 Sobic003G322700--Sobic010G001500 Sobic004G355000 Sobic004G355000 Sobic003G322700--Sobic004G355000 Sobic001G207400 Sobic001G207400 Sobic003G322700--Sobic001G207400 Sobic003G355600 Sobic003G355600 Sobic003G322700--Sobic003G355600 Sobic003G322700--Sobic006G087700 Sobic006G199000 Sobic006G199000 Sobic003G322700--Sobic006G199000 Sobic003G322700--Sobic004G034600 Sobic003G205200 Sobic003G205200 Sobic002G146300--Sobic003G205200 Sobic001G370900 Sobic001G370900 Sobic002G146300--Sobic001G370900 Sobic002G146300--Sobic010G139600 Sobic005G001000 Sobic005G001000 Sobic002G146300--Sobic005G001000 Sobic002G146300--Sobic004G001500 Sobic008G001200 Sobic008G001200 Sobic002G146300--Sobic008G001200 Sobic001G194200 Sobic001G194200 Sobic002G146300--Sobic001G194200 Sobic002G146300--Sobic007G075400 Sobic009G256400 Sobic009G256400 Sobic002G146300--Sobic009G256400
Octagon: transcription factors


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