Gene annotation
Transcriptome id Sobic.004G143475.1
Synonym -
Functional annotation -
UniProt A0A1Z5RME0
Pfam PF00168 PF16909 PF06650 PF06101 PF12624 PF16910 PF16908
Panther DB PTHR16166 PTHR16166:SF93
NCBI CDD KOG1809; Vacuolar protein sorting-associated protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G48090 : calcium-dependent lipid-binding family protein
RAP-DB (Rice) LOC_Os02g27110.1 : expressed protein
MaizeGDB (Corn) Zm00025a034265
Brachypodium PNT68654 , KQJ99462 , KQJ99461
Barley HORVU6Hr1G047650.18 , HORVU6Hr1G047650.19 , HORVU6Hr1G047650.16 , HORVU6Hr1G047650.17 , HORVU6Hr1G047650.14 , HORVU6Hr1G047650.15 , HORVU6Hr1G047650.12 , HORVU6Hr1G047650.13 , HORVU6Hr1G047650.10 , HORVU6Hr1G047650.11 , HORVU6Hr1G047650.27 , HORVU6Hr1G047650.26 , HORVU6Hr1G047650.22 , HORVU6Hr1G047650.21 , HORVU6Hr1G047650.20 , HORVU6Hr1G047650.29 , HORVU6Hr1G047650.28 , HORVU6Hr1G047650.30 , HORVU6Hr1G047650.31 , HORVU6Hr1G047650.8 , HORVU6Hr1G047650.9 , HORVU6Hr1G047650.4 , HORVU6Hr1G047650.5 , HORVU6Hr1G047650.6 , HORVU6Hr1G047650.7 , HORVU6Hr1G047650.1 , HORVU6Hr1G047650.3
Wheat TraesCS6B02G224600 , TraesCS6D02G182900 , TraesCS6D02G182900 , TraesCS6B02G224600 , TraesCS6A02G197400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
2 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
3 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
4 Sobic.001G457800 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K18663: activating signal cointegrator complex subunit 3
5 Sobic.004G001500 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
6 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
7 Sobic.004G146600 lipase, putative, expressed -
8 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor
9 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
10 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
11 Sobic.001G298900 agenet domain containing protein, putative, expressed -
12 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
13 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
14 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -
15 Sobic.001G454500 potyvirus VPg interacting protein, putative, expressed -
16 Sobic.004G223000 MIF4G domain containing protein, putative, expressed K14327: UPF2, regulator of nonsense transcripts 2
17 Sobic.008G130100 protein kinase family protein, putative, expressed -
18 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
19 Sobic.002G124600 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
20 Sobic.003G388100 expressed protein -


Gene co-expression network
sample Sobic004G143475 Sobic004G143475 Sobic002G146300 Sobic002G146300 Sobic004G143475--Sobic002G146300 Sobic008G001200 Sobic008G001200 Sobic004G143475--Sobic008G001200 Sobic001G230000 Sobic001G230000 Sobic004G143475--Sobic001G230000 Sobic001G457800 Sobic001G457800 Sobic004G143475--Sobic001G457800 Sobic004G001500 Sobic004G001500 Sobic004G143475--Sobic004G001500 Sobic003G155100 Sobic003G155100 Sobic004G143475--Sobic003G155100 Sobic004G146600 Sobic004G146600 Sobic004G143475--Sobic004G146600 Sobic009G256400 Sobic009G256400 Sobic004G143475--Sobic009G256400 Sobic003G205200 Sobic003G205200 Sobic004G143475--Sobic003G205200 Sobic002G146300--Sobic003G205200 Sobic001G370900 Sobic001G370900 Sobic002G146300--Sobic001G370900 Sobic010G139600 Sobic010G139600 Sobic002G146300--Sobic010G139600 Sobic005G001000 Sobic005G001000 Sobic002G146300--Sobic005G001000 Sobic002G146300--Sobic004G001500 Sobic002G146300--Sobic008G001200 Sobic001G194200 Sobic001G194200 Sobic002G146300--Sobic001G194200 Sobic007G075400 Sobic007G075400 Sobic002G146300--Sobic007G075400 Sobic002G146300--Sobic009G256400 Sobic008G001200--Sobic003G155100 Sobic010G206900 Sobic010G206900 Sobic008G001200--Sobic010G206900 Sobic008G001200--Sobic009G256400 Sobic008G001200--Sobic003G205200 Sobic010G010700 Sobic010G010700 Sobic008G001200--Sobic010G010700 Sobic008G001200--Sobic001G194200 Sobic008G001200--Sobic005G001000 Sobic004G276400 Sobic004G276400 Sobic008G001200--Sobic004G276400 Sobic004G174200 Sobic004G174200 Sobic008G001200--Sobic004G174200 Sobic001G230000--Sobic010G206900 Sobic001G230000--Sobic003G155100 Sobic001G230000--Sobic008G001200 Sobic001G230000--Sobic004G276400 Sobic004G223000 Sobic004G223000 Sobic001G230000--Sobic004G223000 Sobic009G256300 Sobic009G256300 Sobic001G230000--Sobic009G256300 Sobic001G230000--Sobic010G010700 Sobic001G298900 Sobic001G298900 Sobic001G230000--Sobic001G298900 Sobic008G044100 Sobic008G044100 Sobic001G230000--Sobic008G044100 Sobic001G457800--Sobic009G256400 Sobic001G457800--Sobic008G001200 Sobic001G457800--Sobic001G370900 Sobic003G166750 Sobic003G166750 Sobic001G457800--Sobic003G166750 Sobic001G457800--Sobic003G155100 Sobic001G457800--Sobic004G001500 Sobic001G457800--Sobic001G230000 Sobic003G043200 Sobic003G043200 Sobic001G457800--Sobic003G043200 Sobic004G334300 Sobic004G334300 Sobic001G457800--Sobic004G334300 Sobic004G001500--Sobic002G146300 Sobic004G001500--Sobic003G043200 Sobic005G187300 Sobic005G187300 Sobic004G001500--Sobic005G187300 Sobic004G001500--Sobic001G370900 Sobic004G001500--Sobic001G457800 Sobic004G001500--Sobic009G256400 Sobic004G001500--Sobic003G166750 Sobic004G356700 Sobic004G356700 Sobic004G001500--Sobic004G356700 Sobic001G527800 Sobic001G527800 Sobic004G001500--Sobic001G527800 Sobic003G155100--Sobic008G001200 Sobic006G219600 Sobic006G219600 Sobic003G155100--Sobic006G219600 Sobic003G155100--Sobic010G206900 Sobic003G155100--Sobic001G230000 Sobic001G375100 Sobic001G375100 Sobic003G155100--Sobic001G375100 Sobic003G155100--Sobic001G194200 Sobic003G155100--Sobic010G010700 Sobic003G155100--Sobic009G256400 Sobic004G291900 Sobic004G291900 Sobic003G155100--Sobic004G291900 Sobic004G146600--Sobic001G230000 Sobic004G146600--Sobic001G298900 Sobic004G146600--Sobic004G001500 Sobic004G146600--Sobic006G219600 Sobic002G043800 Sobic002G043800 Sobic004G146600--Sobic002G043800 Sobic004G146600--Sobic004G143475 Sobic010G132600 Sobic010G132600 Sobic004G146600--Sobic010G132600 Sobic004G146600--Sobic003G155100 Sobic004G146600--Sobic003G043200 Sobic009G256400--Sobic001G457800 Sobic009G256400--Sobic008G001200 Sobic009G256400--Sobic001G370900 Sobic009G256400--Sobic004G291900 Sobic009G256400--Sobic005G001000 Sobic009G256400--Sobic003G166750 Sobic009G256400--Sobic001G194200 Sobic009G256400--Sobic004G276400 Sobic009G256400--Sobic010G010700 Sobic003G205200--Sobic002G146300 Sobic003G205200--Sobic005G001000 Sobic003G205200--Sobic008G001200 Sobic003G205200--Sobic001G370900 Sobic003G186000 Sobic003G186000 Sobic003G205200--Sobic003G186000 Sobic003G205200--Sobic010G139600 Sobic003G205200--Sobic004G276400 Sobic003G205200--Sobic001G194200 Sobic008G098900 Sobic008G098900 Sobic003G205200--Sobic008G098900
Octagon: transcription factors


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