Gene annotation
Transcriptome id Sobic.004G001500.1
Synonym UPL3, KAK, Sb04g000340
Functional annotation HECT-domain domain containing protein, expressed
UniProt A0A194YN33
Pfam PF00632
Panther DB PTHR11254 PTHR11254:SF73
NCBI CDD -
KEGG Orthology K10590; E3 ubiquitin-protein ligase TRIP12
Gene Ontology GO:0004842; ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT4G38600 : HEAT repeat ;HECT-domain (ubiquitin-transferase)
RAP-DB (Rice) LOC_Os02g01170.1 : HECT-domain domain containing protein, expressed
MaizeGDB (Corn) Zm00025a011978 , Zm00025a035109 , Zm00025a018628
Brachypodium KQJ92735 , KQJ81971 , PNT60766
Barley HORVU6Hr1G001760.10 , HORVU6Hr1G001760.1 , HORVU6Hr1G001760.2 , HORVU6Hr1G001760.3 , HORVU6Hr1G001760.6 , HORVU6Hr1G001760.7 , HORVU6Hr1G001760.4 , HORVU6Hr1G001760.5 , HORVU6Hr1G001760.8 , HORVU6Hr1G001760.9
Wheat TraesCS6A02G003300 , TraesCS6B02G000300 , TraesCS6D02G005600
Populus -


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cDNA sequences
Sobic.004G001500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
2 Sobic.003G043200 EMB2410, putative, expressed -
3 Sobic.005G187300 lipin, N-terminal conserved region family protein, expressed K15728: phosphatidate phosphatase LPIN
4 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
5 Sobic.001G457800 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K18663: activating signal cointegrator complex subunit 3
6 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor
7 Sobic.003G166750 - K15188: cyclin T
8 Sobic.004G356700 oligopeptidase, putative, expressed K01414: oligopeptidase A
9 Sobic.001G527800 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
10 Sobic.003G107500 expressed protein K10841: ERCC6, CSB, DNA excision repair protein ERCC-6
11 Sobic.003G196300 DNA binding protein, putative, expressed -
12 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
13 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
14 Sobic.007G133700 expressed protein -
15 Sobic.004G146600 lipase, putative, expressed -
16 Sobic.001G192000 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
17 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
18 Sobic.004G143475 - -
19 Sobic.002G275700 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
20 Sobic.009G201300 - -


Gene co-expression network
sample Sobic004G001500 Sobic004G001500 Sobic002G146300 Sobic002G146300 Sobic004G001500--Sobic002G146300 Sobic003G043200 Sobic003G043200 Sobic004G001500--Sobic003G043200 Sobic005G187300 Sobic005G187300 Sobic004G001500--Sobic005G187300 Sobic001G370900 Sobic001G370900 Sobic004G001500--Sobic001G370900 Sobic001G457800 Sobic001G457800 Sobic004G001500--Sobic001G457800 Sobic009G256400 Sobic009G256400 Sobic004G001500--Sobic009G256400 Sobic003G166750 Sobic003G166750 Sobic004G001500--Sobic003G166750 Sobic004G356700 Sobic004G356700 Sobic004G001500--Sobic004G356700 Sobic001G527800 Sobic001G527800 Sobic004G001500--Sobic001G527800 Sobic003G205200 Sobic003G205200 Sobic002G146300--Sobic003G205200 Sobic002G146300--Sobic001G370900 Sobic010G139600 Sobic010G139600 Sobic002G146300--Sobic010G139600 Sobic005G001000 Sobic005G001000 Sobic002G146300--Sobic005G001000 Sobic002G146300--Sobic004G001500 Sobic008G001200 Sobic008G001200 Sobic002G146300--Sobic008G001200 Sobic001G194200 Sobic001G194200 Sobic002G146300--Sobic001G194200 Sobic007G075400 Sobic007G075400 Sobic002G146300--Sobic007G075400 Sobic002G146300--Sobic009G256400 Sobic003G043200--Sobic004G001500 Sobic003G043200--Sobic009G256400 Sobic003G043200--Sobic001G457800 Sobic003G043200--Sobic001G370900 Sobic003G043200--Sobic002G146300 Sobic003G170700 Sobic003G170700 Sobic003G043200--Sobic003G170700 Sobic003G043200--Sobic008G001200 Sobic007G172200 Sobic007G172200 Sobic003G043200--Sobic007G172200 Sobic003G043200--Sobic003G166750 Sobic005G187300--Sobic004G001500 Sobic003G196300 Sobic003G196300 Sobic005G187300--Sobic003G196300 Sobic005G187300--Sobic002G146300 Sobic004G291900 Sobic004G291900 Sobic005G187300--Sobic004G291900 Sobic001G192000 Sobic001G192000 Sobic005G187300--Sobic001G192000 Sobic006G219600 Sobic006G219600 Sobic005G187300--Sobic006G219600 Sobic001G542500 Sobic001G542500 Sobic005G187300--Sobic001G542500 Sobic008G085300 Sobic008G085300 Sobic005G187300--Sobic008G085300 Sobic005G187300--Sobic009G256400 Sobic008G098900 Sobic008G098900 Sobic001G370900--Sobic008G098900 Sobic001G370900--Sobic005G001000 Sobic001G370900--Sobic009G256400 Sobic001G370900--Sobic002G146300 Sobic001G370900--Sobic003G205200 Sobic001G370900--Sobic001G194200 Sobic004G276400 Sobic004G276400 Sobic001G370900--Sobic004G276400 Sobic001G370900--Sobic008G001200 Sobic001G370900--Sobic001G457800 Sobic001G457800--Sobic009G256400 Sobic001G457800--Sobic008G001200 Sobic001G457800--Sobic001G370900 Sobic001G457800--Sobic003G166750 Sobic003G155100 Sobic003G155100 Sobic001G457800--Sobic003G155100 Sobic001G457800--Sobic004G001500 Sobic001G230000 Sobic001G230000 Sobic001G457800--Sobic001G230000 Sobic001G457800--Sobic003G043200 Sobic004G334300 Sobic004G334300 Sobic001G457800--Sobic004G334300 Sobic009G256400--Sobic001G457800 Sobic009G256400--Sobic008G001200 Sobic009G256400--Sobic001G370900 Sobic009G256400--Sobic004G291900 Sobic009G256400--Sobic005G001000 Sobic009G256400--Sobic003G166750 Sobic009G256400--Sobic001G194200 Sobic009G256400--Sobic004G276400 Sobic010G010700 Sobic010G010700 Sobic009G256400--Sobic010G010700 Sobic009G165700 Sobic009G165700 Sobic003G166750--Sobic009G165700 Sobic003G166750--Sobic008G001200 Sobic003G166750--Sobic009G256400 Sobic003G166750--Sobic001G370900 Sobic001G289800 Sobic001G289800 Sobic003G166750--Sobic001G289800 Sobic002G316600 Sobic002G316600 Sobic003G166750--Sobic002G316600 Sobic003G166750--Sobic001G194200 Sobic003G166750--Sobic001G527800 Sobic003G166750--Sobic001G457800 Sobic004G356700--Sobic008G001200 Sobic004G356700--Sobic001G194200 Sobic004G356700--Sobic002G146300 Sobic004G356700--Sobic004G001500 Sobic004G356700--Sobic009G256400 Sobic004G244900 Sobic004G244900 Sobic004G356700--Sobic004G244900 Sobic004G356700--Sobic003G155100 Sobic004G356700--Sobic006G219600 Sobic004G356700--Sobic004G334300 Sobic001G527800--Sobic002G316600 Sobic001G527800--Sobic008G001200 Sobic001G527800--Sobic004G276400 Sobic010G206900 Sobic010G206900 Sobic001G527800--Sobic010G206900 Sobic001G527800--Sobic003G166750 Sobic003G186000 Sobic003G186000 Sobic001G527800--Sobic003G186000 Sobic001G527800--Sobic003G196300 Sobic007G103100 Sobic007G103100 Sobic001G527800--Sobic007G103100 Sobic010G123600 Sobic010G123600 Sobic001G527800--Sobic010G123600
Octagon: transcription factors


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