Gene annotation
Transcriptome id Sobic.005G187300.1
Synonym Sb05g024490, ATPAH2, PAH2
Functional annotation lipin, N-terminal conserved region family protein, expressed
UniProt C5Y6E6
Pfam PF16876 PF04571 PF08235
Panther DB PTHR12181 PTHR12181:SF12
NCBI CDD KOG2116; Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism
KEGG Orthology K15728; phosphatidate phosphatase LPIN
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G42870 : phosphatidic acid phosphohydrolase 2
RAP-DB (Rice) LOC_Os11g40080.1 : lipin, N-terminal conserved region family protein, expressed
MaizeGDB (Corn) Zm00025a029356
Brachypodium KQJ87821 , KQJ87820 , KQJ87819
Barley HORVU4Hr1G035360.13 , HORVU4Hr1G035360.12 , HORVU4Hr1G035360.11 , HORVU4Hr1G035360.10 , HORVU4Hr1G035360.17 , HORVU4Hr1G035360.16 , HORVU4Hr1G035360.15 , HORVU4Hr1G035360.14 , HORVU4Hr1G035360.19 , HORVU4Hr1G035360.18 , HORVU4Hr1G035360.22 , HORVU4Hr1G035360.20 , HORVU4Hr1G035360.21 , HORVU4Hr1G035360.8 , HORVU4Hr1G035360.7 , HORVU4Hr1G035360.6 , HORVU4Hr1G035360.3 , HORVU4Hr1G035360.2 , HORVU4Hr1G035360.1 , HORVU4Hr1G035360.5 , HORVU4Hr1G035360.4 , HORVU4Hr1G035360.9
Wheat TraesCS4A02G160600 , TraesCS4A02G160600 , TraesCS4A02G160600 , TraesCS4D02G165100 , TraesCS4D02G165100 , TraesCS4B02G163700 , TraesCS4B02G163700 , TraesCS4B02G163700 , TraesCS4B02G163700 , TraesCS4B02G163700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G001500 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
2 Sobic.003G196300 DNA binding protein, putative, expressed -
3 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
4 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
5 Sobic.001G192000 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
6 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
7 Sobic.001G542500 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
8 Sobic.008G085300 hhH-GPD superfamily base excision DNA repair protein, expressed -
9 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor
10 Sobic.001G527800 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
11 Sobic.004G146600 lipase, putative, expressed -
12 Sobic.001G289800 BAH domain containing protein, putative, expressed -
13 Sobic.004G023100 protein binding protein, putative, expressed -
14 Sobic.007G133700 expressed protein -
15 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
16 Sobic.004G040500 expressed protein -
17 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
18 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
19 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
20 Sobic.003G107500 expressed protein K10841: ERCC6, CSB, DNA excision repair protein ERCC-6


Gene co-expression network
sample Sobic005G187300 Sobic005G187300 Sobic004G001500 Sobic004G001500 Sobic005G187300--Sobic004G001500 Sobic003G196300 Sobic003G196300 Sobic005G187300--Sobic003G196300 Sobic002G146300 Sobic002G146300 Sobic005G187300--Sobic002G146300 Sobic004G291900 Sobic004G291900 Sobic005G187300--Sobic004G291900 Sobic001G192000 Sobic001G192000 Sobic005G187300--Sobic001G192000 Sobic006G219600 Sobic006G219600 Sobic005G187300--Sobic006G219600 Sobic001G542500 Sobic001G542500 Sobic005G187300--Sobic001G542500 Sobic008G085300 Sobic008G085300 Sobic005G187300--Sobic008G085300 Sobic009G256400 Sobic009G256400 Sobic005G187300--Sobic009G256400 Sobic004G001500--Sobic002G146300 Sobic003G043200 Sobic003G043200 Sobic004G001500--Sobic003G043200 Sobic004G001500--Sobic005G187300 Sobic001G370900 Sobic001G370900 Sobic004G001500--Sobic001G370900 Sobic001G457800 Sobic001G457800 Sobic004G001500--Sobic001G457800 Sobic004G001500--Sobic009G256400 Sobic003G166750 Sobic003G166750 Sobic004G001500--Sobic003G166750 Sobic004G356700 Sobic004G356700 Sobic004G001500--Sobic004G356700 Sobic001G527800 Sobic001G527800 Sobic004G001500--Sobic001G527800 Sobic010G206900 Sobic010G206900 Sobic003G196300--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic003G196300--Sobic004G034900 Sobic001G194200 Sobic001G194200 Sobic003G196300--Sobic001G194200 Sobic007G063000 Sobic007G063000 Sobic003G196300--Sobic007G063000 Sobic001G289800 Sobic001G289800 Sobic003G196300--Sobic001G289800 Sobic004G276400 Sobic004G276400 Sobic003G196300--Sobic004G276400 Sobic010G247800 Sobic010G247800 Sobic003G196300--Sobic010G247800 Sobic009G256300 Sobic009G256300 Sobic003G196300--Sobic009G256300 Sobic001G534700 Sobic001G534700 Sobic003G196300--Sobic001G534700 Sobic003G205200 Sobic003G205200 Sobic002G146300--Sobic003G205200 Sobic002G146300--Sobic001G370900 Sobic010G139600 Sobic010G139600 Sobic002G146300--Sobic010G139600 Sobic005G001000 Sobic005G001000 Sobic002G146300--Sobic005G001000 Sobic002G146300--Sobic004G001500 Sobic008G001200 Sobic008G001200 Sobic002G146300--Sobic008G001200 Sobic002G146300--Sobic001G194200 Sobic007G075400 Sobic007G075400 Sobic002G146300--Sobic007G075400 Sobic002G146300--Sobic009G256400 Sobic004G291900--Sobic001G194200 Sobic004G291900--Sobic001G289800 Sobic004G174200 Sobic004G174200 Sobic004G291900--Sobic004G174200 Sobic004G291900--Sobic004G276400 Sobic004G291900--Sobic005G001000 Sobic004G291900--Sobic004G034900 Sobic004G291900--Sobic009G256400 Sobic001G002000 Sobic001G002000 Sobic004G291900--Sobic001G002000 Sobic010G010700 Sobic010G010700 Sobic004G291900--Sobic010G010700 Sobic002G275700 Sobic002G275700 Sobic001G192000--Sobic002G275700 Sobic009G255700 Sobic009G255700 Sobic001G192000--Sobic009G255700 Sobic005G162500 Sobic005G162500 Sobic001G192000--Sobic005G162500 Sobic008G088872 Sobic008G088872 Sobic001G192000--Sobic008G088872 Sobic001G333100 Sobic001G333100 Sobic001G192000--Sobic001G333100 Sobic003G195000 Sobic003G195000 Sobic001G192000--Sobic003G195000 Sobic001G192000--Sobic002G146300 Sobic001G192000--Sobic001G370900 Sobic003G221400 Sobic003G221400 Sobic001G192000--Sobic003G221400 Sobic003G155100 Sobic003G155100 Sobic006G219600--Sobic003G155100 Sobic009G201300 Sobic009G201300 Sobic006G219600--Sobic009G201300 Sobic002G124600 Sobic002G124600 Sobic006G219600--Sobic002G124600 Sobic006G050700 Sobic006G050700 Sobic006G219600--Sobic006G050700 Sobic001G298900 Sobic001G298900 Sobic006G219600--Sobic001G298900 Sobic006G133900 Sobic006G133900 Sobic006G219600--Sobic006G133900 Sobic001G133000 Sobic001G133000 Sobic006G219600--Sobic001G133000 Sobic005G106600 Sobic005G106600 Sobic006G219600--Sobic005G106600 Sobic005G084500 Sobic005G084500 Sobic006G219600--Sobic005G084500 Sobic001G542500--Sobic004G291900 Sobic001G542500--Sobic001G289800 Sobic001G542500--Sobic008G085300 Sobic001G542500--Sobic004G276400 Sobic008G098900 Sobic008G098900 Sobic001G542500--Sobic008G098900 Sobic001G542500--Sobic003G196300 Sobic001G117200 Sobic001G117200 Sobic001G542500--Sobic001G117200 Sobic009G109200 Sobic009G109200 Sobic001G542500--Sobic009G109200 Sobic001G542500--Sobic004G174200 Sobic008G085300--Sobic008G098900 Sobic008G085300--Sobic001G542500 Sobic008G085300--Sobic005G162500 Sobic008G085300--Sobic004G276400 Sobic008G092600 Sobic008G092600 Sobic008G085300--Sobic008G092600 Sobic002G147600 Sobic002G147600 Sobic008G085300--Sobic002G147600 Sobic003G186000 Sobic003G186000 Sobic008G085300--Sobic003G186000 Sobic008G085300--Sobic001G370900 Sobic008G085300--Sobic004G291900 Sobic009G256400--Sobic001G457800 Sobic009G256400--Sobic008G001200 Sobic009G256400--Sobic001G370900 Sobic009G256400--Sobic004G291900 Sobic009G256400--Sobic005G001000 Sobic009G256400--Sobic003G166750 Sobic009G256400--Sobic001G194200 Sobic009G256400--Sobic004G276400 Sobic009G256400--Sobic010G010700
Octagon: transcription factors


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