Gene annotation
Transcriptome id Sobic.004G146600.1
Synonym Sb04g019260
Functional annotation lipase, putative, expressed
UniProt A0A194YQW1
Pfam PF01764
Panther DB PTHR21493 PTHR21493:SF84
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006629; lipid metabolic process


Orthologs (automatic annotation)
TAIR AT3G07400 : lipase class 3 family protein
RAP-DB (Rice) LOC_Os02g28040.1 : lipase, putative, expressed
MaizeGDB (Corn) Zm00025a034248
Brachypodium PNT68635 , KQJ99497 , KQJ99499 , KQJ99498
Barley HORVU6Hr1G045800.10 , HORVU6Hr1G045800.3 , HORVU6Hr1G045800.2 , HORVU6Hr1G045800.1 , HORVU6Hr1G045800.7 , HORVU6Hr1G045800.6 , HORVU6Hr1G045800.4 , HORVU6Hr1G045800.8 , HORVU6Hr1G045820.3 , HORVU6Hr1G045820.2 , HORVU6Hr1G045820.4 , HORVU6Hr1G045800.9
Wheat TraesCS6B02G235100 , TraesCS6A02G197800 , TraesCS6D02G179300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
2 Sobic.001G298900 agenet domain containing protein, putative, expressed -
3 Sobic.004G001500 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
4 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
5 Sobic.002G043800 regulator of chromosome condensation/beta-lactamase-inhibitor protein II, putative, expressed -
6 Sobic.004G143475 - -
7 Sobic.010G132600 selenoprotein O, putative, expressed -
8 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
9 Sobic.003G043200 EMB2410, putative, expressed -
10 Sobic.004G231900 ribonuclease protein, putative, expressed K18758: DIS3-like exonuclease 2
11 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
12 Sobic.005G187300 lipin, N-terminal conserved region family protein, expressed K15728: phosphatidate phosphatase LPIN
13 Sobic.003G119600 zinc finger, C3HC4 type domain containing protein, expressed -
14 Sobic.001G457800 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K18663: activating signal cointegrator complex subunit 3
15 Sobic.004G356700 oligopeptidase, putative, expressed K01414: oligopeptidase A
16 Sobic.003G196300 DNA binding protein, putative, expressed -
17 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
18 Sobic.003G107500 expressed protein K10841: ERCC6, CSB, DNA excision repair protein ERCC-6
19 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
20 Sobic.002G198200 expressed protein K03128: transcription initiation factor TFIID subunit 2


Gene co-expression network
sample Sobic004G146600 Sobic004G146600 Sobic001G230000 Sobic001G230000 Sobic004G146600--Sobic001G230000 Sobic001G298900 Sobic001G298900 Sobic004G146600--Sobic001G298900 Sobic004G001500 Sobic004G001500 Sobic004G146600--Sobic004G001500 Sobic006G219600 Sobic006G219600 Sobic004G146600--Sobic006G219600 Sobic002G043800 Sobic002G043800 Sobic004G146600--Sobic002G043800 Sobic004G143475 Sobic004G143475 Sobic004G146600--Sobic004G143475 Sobic010G132600 Sobic010G132600 Sobic004G146600--Sobic010G132600 Sobic003G155100 Sobic003G155100 Sobic004G146600--Sobic003G155100 Sobic003G043200 Sobic003G043200 Sobic004G146600--Sobic003G043200 Sobic010G206900 Sobic010G206900 Sobic001G230000--Sobic010G206900 Sobic001G230000--Sobic003G155100 Sobic008G001200 Sobic008G001200 Sobic001G230000--Sobic008G001200 Sobic004G276400 Sobic004G276400 Sobic001G230000--Sobic004G276400 Sobic004G223000 Sobic004G223000 Sobic001G230000--Sobic004G223000 Sobic009G256300 Sobic009G256300 Sobic001G230000--Sobic009G256300 Sobic010G010700 Sobic010G010700 Sobic001G230000--Sobic010G010700 Sobic001G230000--Sobic001G298900 Sobic008G044100 Sobic008G044100 Sobic001G230000--Sobic008G044100 Sobic001G298900--Sobic001G230000 Sobic001G298900--Sobic006G219600 Sobic002G198200 Sobic002G198200 Sobic001G298900--Sobic002G198200 Sobic004G178500 Sobic004G178500 Sobic001G298900--Sobic004G178500 Sobic001G298900--Sobic003G155100 Sobic001G298900--Sobic008G044100 Sobic003G388100 Sobic003G388100 Sobic001G298900--Sobic003G388100 Sobic005G142800 Sobic005G142800 Sobic001G298900--Sobic005G142800 Sobic001G298900--Sobic004G146600 Sobic002G146300 Sobic002G146300 Sobic004G001500--Sobic002G146300 Sobic004G001500--Sobic003G043200 Sobic005G187300 Sobic005G187300 Sobic004G001500--Sobic005G187300 Sobic001G370900 Sobic001G370900 Sobic004G001500--Sobic001G370900 Sobic001G457800 Sobic001G457800 Sobic004G001500--Sobic001G457800 Sobic009G256400 Sobic009G256400 Sobic004G001500--Sobic009G256400 Sobic003G166750 Sobic003G166750 Sobic004G001500--Sobic003G166750 Sobic004G356700 Sobic004G356700 Sobic004G001500--Sobic004G356700 Sobic001G527800 Sobic001G527800 Sobic004G001500--Sobic001G527800 Sobic006G219600--Sobic003G155100 Sobic009G201300 Sobic009G201300 Sobic006G219600--Sobic009G201300 Sobic002G124600 Sobic002G124600 Sobic006G219600--Sobic002G124600 Sobic006G050700 Sobic006G050700 Sobic006G219600--Sobic006G050700 Sobic006G219600--Sobic001G298900 Sobic006G133900 Sobic006G133900 Sobic006G219600--Sobic006G133900 Sobic001G133000 Sobic001G133000 Sobic006G219600--Sobic001G133000 Sobic005G106600 Sobic005G106600 Sobic006G219600--Sobic005G106600 Sobic005G084500 Sobic005G084500 Sobic006G219600--Sobic005G084500 Sobic010G150100 Sobic010G150100 Sobic002G043800--Sobic010G150100 Sobic003G107500 Sobic003G107500 Sobic002G043800--Sobic003G107500 Sobic002G043800--Sobic004G146600 Sobic008G167600 Sobic008G167600 Sobic002G043800--Sobic008G167600 Sobic004G151300 Sobic004G151300 Sobic002G043800--Sobic004G151300 Sobic003G150500 Sobic003G150500 Sobic002G043800--Sobic003G150500 Sobic004G312600 Sobic004G312600 Sobic002G043800--Sobic004G312600 Sobic003G271400 Sobic003G271400 Sobic002G043800--Sobic003G271400 Sobic002G295100 Sobic002G295100 Sobic002G043800--Sobic002G295100 Sobic004G143475--Sobic002G146300 Sobic004G143475--Sobic008G001200 Sobic004G143475--Sobic001G230000 Sobic004G143475--Sobic001G457800 Sobic004G143475--Sobic004G001500 Sobic004G143475--Sobic003G155100 Sobic004G143475--Sobic004G146600 Sobic004G143475--Sobic009G256400 Sobic003G205200 Sobic003G205200 Sobic004G143475--Sobic003G205200 Sobic002G257750 Sobic002G257750 Sobic010G132600--Sobic002G257750 Sobic010G132600--Sobic004G146600 Sobic010G132600--Sobic005G106600 Sobic005G132000 Sobic005G132000 Sobic010G132600--Sobic005G132000 Sobic010G132600--Sobic004G356700 Sobic003G057233 Sobic003G057233 Sobic010G132600--Sobic003G057233 Sobic003G398700 Sobic003G398700 Sobic010G132600--Sobic003G398700 Sobic003G029500 Sobic003G029500 Sobic010G132600--Sobic003G029500 Sobic004G231900 Sobic004G231900 Sobic010G132600--Sobic004G231900 Sobic003G155100--Sobic008G001200 Sobic003G155100--Sobic006G219600 Sobic003G155100--Sobic010G206900 Sobic003G155100--Sobic001G230000 Sobic001G375100 Sobic001G375100 Sobic003G155100--Sobic001G375100 Sobic001G194200 Sobic001G194200 Sobic003G155100--Sobic001G194200 Sobic003G155100--Sobic010G010700 Sobic003G155100--Sobic009G256400 Sobic004G291900 Sobic004G291900 Sobic003G155100--Sobic004G291900 Sobic003G043200--Sobic004G001500 Sobic003G043200--Sobic009G256400 Sobic003G043200--Sobic001G457800 Sobic003G043200--Sobic001G370900 Sobic003G043200--Sobic002G146300 Sobic003G170700 Sobic003G170700 Sobic003G043200--Sobic003G170700 Sobic003G043200--Sobic008G001200 Sobic007G172200 Sobic007G172200 Sobic003G043200--Sobic007G172200 Sobic003G043200--Sobic003G166750
Octagon: transcription factors


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