Gene annotation
Transcriptome id Sobic.002G198200.3,Sobic.002G198200.2,Sobic.002G198200.1
Synonym TAF2
Functional annotation expressed protein
UniProt A0A1B6QCI6 , A0A1B6QCG3 , A0A1W0W567
Pfam PF01433
Panther DB PTHR15137
NCBI CDD -
KEGG Orthology K03128; transcription initiation factor TFIID subunit 2
Gene Ontology GO:0008270; zinc ion binding GO:0008237metallopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G73960 : TBP-associated factor 2
RAP-DB (Rice) LOC_Os09g24440.1 : expressed protein
MaizeGDB (Corn) Zm00025a013885 , Zm00025a046940
Brachypodium KQJ90190 , KQJ90189
Barley HORVU5Hr1G061200.28 , HORVU5Hr1G061200.27 , HORVU5Hr1G061200.26 , HORVU5Hr1G061200.25 , HORVU5Hr1G061200.24 , HORVU5Hr1G061200.23 , HORVU5Hr1G061200.21 , HORVU5Hr1G061200.20 , HORVU3Hr1G023590.1 , HORVU3Hr1G023590.2 , HORVU3Hr1G023590.3 , HORVU5Hr1G061200.22 , HORVU5Hr1G061200.4 , HORVU5Hr1G061200.5 , HORVU5Hr1G061200.6 , HORVU5Hr1G061200.7 , HORVU5Hr1G061200.1 , HORVU5Hr1G061200.2 , HORVU5Hr1G061200.3 , HORVU5Hr1G061200.8 , HORVU5Hr1G061200.14 , HORVU5Hr1G061200.12 , HORVU5Hr1G061200.13 , HORVU5Hr1G061200.10 , HORVU5Hr1G061180.1 , HORVU5Hr1G061200.9 , HORVU5Hr1G061200.16 , HORVU5Hr1G061200.17 , HORVU5Hr1G061200.15 , HORVU5Hr1G061200.11 , HORVU5Hr1G061200.18 , HORVU5Hr1G061200.19
Wheat TraesCS5A02G207000 , TraesCS5B02G205400 , TraesCS5D02G213200
Populus -


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cDNA sequences
Sobic.002G198200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G298900 agenet domain containing protein, putative, expressed -
2 Sobic.007G111400 - -
3 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
4 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
5 Sobic.004G178500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor 7, putative, expressed K14486: K14486, auxin response factor
6 Sobic.003G388100 expressed protein -
7 Sobic.006G065100 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
8 Sobic.002G345700 insulin-degrading enzyme, putative, expressed K01408: IDE, insulysin
9 Sobic.005G142800 exportin 1, putative, expressed K15436: TRPO3, transportin-3
10 Sobic.006G133900 NIN, putative, expressed -
11 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
12 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
13 Sobic.001G527800 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
14 Sobic.004G146600 lipase, putative, expressed -
15 Sobic.006G051800 calmodulin-binding transcription activator 4, putative, expressed -
16 Sobic.003G029500 zinc finger, C3HC4 type family protein, expressed -
17 Sobic.010G079500 PHD-finger domain containing protein, putative, expressed -
18 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
19 Sobic.004G181600 calmodulin binding protein, putative, expressed -
20 Sobic.006G270700 - -


Gene co-expression network
sample Sobic002G198200 Sobic002G198200 Sobic001G298900 Sobic001G298900 Sobic002G198200--Sobic001G298900 Sobic007G111400 Sobic007G111400 Sobic002G198200--Sobic007G111400 Sobic003G155100 Sobic003G155100 Sobic002G198200--Sobic003G155100 Sobic006G219600 Sobic006G219600 Sobic002G198200--Sobic006G219600 Sobic004G178500 Sobic004G178500 Sobic002G198200--Sobic004G178500 Sobic003G388100 Sobic003G388100 Sobic002G198200--Sobic003G388100 Sobic006G065100 Sobic006G065100 Sobic002G198200--Sobic006G065100 Sobic002G345700 Sobic002G345700 Sobic002G198200--Sobic002G345700 Sobic005G142800 Sobic005G142800 Sobic002G198200--Sobic005G142800 Sobic001G230000 Sobic001G230000 Sobic001G298900--Sobic001G230000 Sobic001G298900--Sobic006G219600 Sobic001G298900--Sobic002G198200 Sobic001G298900--Sobic004G178500 Sobic001G298900--Sobic003G155100 Sobic008G044100 Sobic008G044100 Sobic001G298900--Sobic008G044100 Sobic001G298900--Sobic003G388100 Sobic001G298900--Sobic005G142800 Sobic004G146600 Sobic004G146600 Sobic001G298900--Sobic004G146600 Sobic007G111400--Sobic002G198200 Sobic006G270700 Sobic006G270700 Sobic007G111400--Sobic006G270700 Sobic007G111400--Sobic005G142800 Sobic007G111400--Sobic001G298900 Sobic007G111400--Sobic006G219600 Sobic007G111400--Sobic002G345700 Sobic007G111400--Sobic003G388100 Sobic007G111400--Sobic004G146600 Sobic005G075100 Sobic005G075100 Sobic007G111400--Sobic005G075100 Sobic008G001200 Sobic008G001200 Sobic003G155100--Sobic008G001200 Sobic003G155100--Sobic006G219600 Sobic010G206900 Sobic010G206900 Sobic003G155100--Sobic010G206900 Sobic003G155100--Sobic001G230000 Sobic001G375100 Sobic001G375100 Sobic003G155100--Sobic001G375100 Sobic001G194200 Sobic001G194200 Sobic003G155100--Sobic001G194200 Sobic010G010700 Sobic010G010700 Sobic003G155100--Sobic010G010700 Sobic009G256400 Sobic009G256400 Sobic003G155100--Sobic009G256400 Sobic004G291900 Sobic004G291900 Sobic003G155100--Sobic004G291900 Sobic006G219600--Sobic003G155100 Sobic009G201300 Sobic009G201300 Sobic006G219600--Sobic009G201300 Sobic002G124600 Sobic002G124600 Sobic006G219600--Sobic002G124600 Sobic006G050700 Sobic006G050700 Sobic006G219600--Sobic006G050700 Sobic006G219600--Sobic001G298900 Sobic006G133900 Sobic006G133900 Sobic006G219600--Sobic006G133900 Sobic001G133000 Sobic001G133000 Sobic006G219600--Sobic001G133000 Sobic005G106600 Sobic005G106600 Sobic006G219600--Sobic005G106600 Sobic005G084500 Sobic005G084500 Sobic006G219600--Sobic005G084500 Sobic004G178500--Sobic001G298900 Sobic004G178500--Sobic002G198200 Sobic004G181600 Sobic004G181600 Sobic004G178500--Sobic004G181600 Sobic004G178500--Sobic008G044100 Sobic004G178500--Sobic006G133900 Sobic006G065600 Sobic006G065600 Sobic004G178500--Sobic006G065600 Sobic004G178500--Sobic006G270700 Sobic001G365900 Sobic001G365900 Sobic004G178500--Sobic001G365900 Sobic004G178500--Sobic003G388100 Sobic003G388100--Sobic008G001200 Sobic001G454500 Sobic001G454500 Sobic003G388100--Sobic001G454500 Sobic003G388100--Sobic010G206900 Sobic003G388100--Sobic001G365900 Sobic010G123600 Sobic010G123600 Sobic003G388100--Sobic010G123600 Sobic003G388100--Sobic003G155100 Sobic009G256300 Sobic009G256300 Sobic003G388100--Sobic009G256300 Sobic003G389200 Sobic003G389200 Sobic003G388100--Sobic003G389200 Sobic003G388100--Sobic001G230000 Sobic009G093100 Sobic009G093100 Sobic006G065100--Sobic009G093100 Sobic001G077300 Sobic001G077300 Sobic006G065100--Sobic001G077300 Sobic004G127800 Sobic004G127800 Sobic006G065100--Sobic004G127800 Sobic003G073800 Sobic003G073800 Sobic006G065100--Sobic003G073800 Sobic001G378100 Sobic001G378100 Sobic006G065100--Sobic001G378100 Sobic006G090100 Sobic006G090100 Sobic006G065100--Sobic006G090100 Sobic002G081400 Sobic002G081400 Sobic006G065100--Sobic002G081400 Sobic005G179300 Sobic005G179300 Sobic006G065100--Sobic005G179300 Sobic001G333800 Sobic001G333800 Sobic006G065100--Sobic001G333800 Sobic008G172300 Sobic008G172300 Sobic002G345700--Sobic008G172300 Sobic002G345700--Sobic005G075100 Sobic002G345700--Sobic005G142800 Sobic001G396000 Sobic001G396000 Sobic002G345700--Sobic001G396000 Sobic002G345700--Sobic002G198200 Sobic004G026500 Sobic004G026500 Sobic002G345700--Sobic004G026500 Sobic001G124100 Sobic001G124100 Sobic002G345700--Sobic001G124100 Sobic002G345700--Sobic004G181600 Sobic002G345700--Sobic007G111400 Sobic006G119400 Sobic006G119400 Sobic005G142800--Sobic006G119400 Sobic005G142800--Sobic001G298900 Sobic005G142800--Sobic001G124100 Sobic004G134200 Sobic004G134200 Sobic005G142800--Sobic004G134200 Sobic005G142800--Sobic008G172300 Sobic005G142800--Sobic002G345700 Sobic002G418600 Sobic002G418600 Sobic005G142800--Sobic002G418600 Sobic010G079500 Sobic010G079500 Sobic005G142800--Sobic010G079500 Sobic005G142800--Sobic007G111400
Octagon: transcription factors


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